View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5466_low_7 (Length: 366)
Name: NF5466_low_7
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5466_low_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 52108658 - 52109023
Alignment:
| Q |
1 |
ataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacactacaacccaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52108658 |
ataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacactacaacccaaa |
52108757 |
T |
|
| Q |
101 |
atcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52108758 |
atcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaat |
52108857 |
T |
|
| Q |
201 |
cctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtgtctctttgcggccttgaatcacaccccatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52108858 |
cctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcacaccccatgt |
52108957 |
T |
|
| Q |
301 |
aacagtaggcatctcgcattcgggaaatttggaatcttgggttccatagagattgaatagtaaaac |
366 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52108958 |
aacagtaggcatctcgtattccggaaatttggaatcttgggttccatagagattgaatagtaaaac |
52109023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 44519931 - 44520295
Alignment:
| Q |
1 |
ataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacactacaacccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||| ||||||||||||||| |
|
|
| T |
44519931 |
ataattcttaataaattcaccaagtttagacctagaaatcc-aattttttataaataccctaaaatacgaatcatgttttttctcacactacaacccaaa |
44520029 |
T |
|
| Q |
101 |
atcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaat |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44520030 |
attaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaat |
44520129 |
T |
|
| Q |
201 |
cctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtgtctctttgcggccttgaatcacaccccatgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
44520130 |
cctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgaccctcgaaacgagtttctctttgcgaccttgaatcacaccccatgt |
44520229 |
T |
|
| Q |
301 |
aacagtaggcatctcgcattcgggaaatttggaatcttgggttccatagagattgaatagtaaaac |
366 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
44520230 |
aacagtaggcatctcgtattcaggaaatttggaatcttgggttccatagagattgaagaataaaac |
44520295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University