View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5466_low_8 (Length: 337)
Name: NF5466_low_8
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5466_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 33096787 - 33096465
Alignment:
| Q |
20 |
agatacacaaaggcatgttataattaaaatgcagccagtaatatttccattcccttaacactactaataaagatctcgatgtcaatatttctaccaaata |
119 |
Q |
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| T |
33096787 |
agatacacaaaggcatgttataattaaaatgcagccagtaatatttccattcccttaacactactaataaagatctcgatgtcaatatttctaccaaata |
33096688 |
T |
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| Q |
120 |
gcattgctagtgatgaaagtattctaaaattactag---aatcatataaaaagtttagcaaccatagtacttcatataaaagcatatttacttgtaaaga |
216 |
Q |
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| T |
33096687 |
gcattgctagtgatgaaagtattctaaaatgactagaataatcatataaaaagtttagcaaccatagtacttcatataaaagcatatttacttgtaaaga |
33096588 |
T |
|
| Q |
217 |
atggtgatgaaaaccattctctgacctgttaacttctgcagcaagaaattgagtatatttggatataaaa---------tgaacaaatttcaacttttca |
307 |
Q |
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| T |
33096587 |
atggtgatgaaaacaattctctgacctgttaacttctgcagcaagaaattgagtatatttggatataaaatggtacttttgaacaaatttcaacttttca |
33096488 |
T |
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| Q |
308 |
tctgatatgttccacaggttctg |
330 |
Q |
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| T |
33096487 |
tctgatatgttccacaagttctg |
33096465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 40743220 - 40743164
Alignment:
| Q |
48 |
atgcagccagtaatatttccattcccttaacactactaataaagatctcgatgtcaa |
104 |
Q |
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| T |
40743220 |
atgcagccagtaatatttccattcccttgacacaactaataaagatctccatgtcaa |
40743164 |
T |
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