View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5467-Insertion-1 (Length: 313)

Name: NF5467-Insertion-1
Description: NF5467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5467-Insertion-1
NF5467-Insertion-1
[»] chr1 (1 HSPs)
chr1 (4-313)||(30418769-30419078)


Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 4 - 313
Target Start/End: Complemental strand, 30419078 - 30418769
Alignment:
Q  4 aacaaaaacaacaagagaatgaagattcctccaacggaatcagagtccaaggaatgcaattctcctacaacgacatccaacaacaacaaccaccgctctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30419078 aacaaaaacaacaagagaatgaagattcctccaacggaatcagagtccaaggaatgcaattctcctacaacgacatccaacaacaacaaccaccgctctt 30418979  T
Q  104 cgtcgatttcaacctccaagtttctcccggatccagatgcctcctcgtcggtgctaacggatccggtaaaacgaccttgctgaagattctggcggggaag 203  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30418978 cgtcgatttcaacctccaagtttctccaggatccagatgcctcctcgtcggtgctaacggatccggtaaaacgactttgctgaagattctggcggggaag 30418879  T
Q  204 catatggttggaggaaaagacgttgtccgtgtcttgaattgttctgcttttcatgatactcagcttgtttgtagtggtgatcttgcttatttgggtggat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30418878 catatggttggaggaaaagacgttgtccgtgtcttgaattgttctgcttttcatgatactcagcttgtttgtagtggtgatcttgcttatttgggtggat 30418779  T
Q  304 cttggagcaa 313  Q
    ||||||||||    
T  30418778 cttggagcaa 30418769  T

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