View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5467-Insertion-2 (Length: 140)

Name: NF5467-Insertion-2
Description: NF5467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5467-Insertion-2
NF5467-Insertion-2
[»] chr3 (16 HSPs)
chr3 (8-140)||(22356711-22356849)
chr3 (12-137)||(22634194-22634313)
chr3 (12-140)||(22366657-22366779)
chr3 (12-79)||(22352598-22352665)
chr3 (12-80)||(22441532-22441600)
chr3 (12-72)||(22629238-22629298)
chr3 (12-80)||(22430000-22430068)
chr3 (22-72)||(22457305-22457355)
chr3 (22-72)||(22480286-22480336)
chr3 (12-72)||(22466743-22466803)
chr3 (14-56)||(22435442-22435484)
chr3 (104-139)||(22352544-22352579)
chr3 (104-139)||(22441476-22441511)
chr3 (32-73)||(22054324-22054365)
chr3 (106-139)||(22435365-22435398)
chr3 (104-139)||(22466691-22466726)


Alignment Details
Target: chr3 (Bit Score: 104; Significance: 3e-52; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 22356849 - 22356711
Alignment:
Q  8 ttaagagtaaatatatgagtgctatatcttcctcaatcaatgagatgcaaaaattggagaaactaaatattaga------ggaatcggaatgggatatgg 101  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |      ||||||||||||||||||||    
T  22356849 ttaagagtaaatatatgagtggtatatcttcctcaatcaatgagatgcaaaaattggagaaactaagtattaaaggagtcggaatcggaatgggatatgg 22356750  T
Q  102 cgcattcattgatcttgatttgaattcacccccacctat 140  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22356749 cgcattcattgatcttgatttgaattcacccccacctat 22356711  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 22634313 - 22634194
Alignment:
Q  12 gagtaaatatatgagtgctatatcttcctcaatcaatgagatgcaaaaattggagaaactaaatattagaggaatcggaatgggatatggcgcattcatt 111  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||       |||||  | ||||||||    
T  22634313 gagtaaatatatgagtgctatatcttcctcaatcaacaagatgcaacaattggagaaactaaatattagaggaatc------agatataacacattcatt 22634220  T
Q  112 gatcttgatttgaattcacccccacc 137  Q
    ||| | ||||||||||||||||||||    
T  22634219 gatatggatttgaattcacccccacc 22634194  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 22366779 - 22366657
Alignment:
Q  12 gagtaaatatatgagtgctatatcttcctcaatcaatgagatgcaaaaattggagaaactaaatattagaggaatcggaatgggatatggcgcattcatt 111  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||| ||| ||      | |||||   ||||||||    
T  22366779 gagtaaatatatgagtgctatatcttcttcaatcaataagatgcaacaactggagaaactaaatattagtggagtc------gaatatgagacattcatt 22366686  T
Q  112 gatcttgatttgaattcacccccacctat 140  Q
    ||||| |||||||||||||||||||||||    
T  22366685 gatctggatttgaattcacccccacctat 22366657  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 22352665 - 22352598
Alignment:
Q  12 gagtaaatatatgagtgctatatcttcctcaatcaatgagatgcaaaaattggagaaactaaatatta 79  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  22352665 gagtaaatatatgagtgctctatcttcctcaatcaatcagatgcaaaaattggagaaactatatatta 22352598  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 22441600 - 22441532
Alignment:
Q  12 gagtaaatatatgagtgctatatcttcctcaatcaatgagatgcaaaaattggagaaactaaatattag 80  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||||    
T  22441600 gagtaaatatatgagtgctatatctttctcaatcaacgagatgcaacaattggagaaactaattattag 22441532  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 22629298 - 22629238
Alignment:
Q  12 gagtaaatatatgagtgctatatcttcctcaatcaatgagatgcaaaaattggagaaacta 72  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  22629298 gagtaaatatatgagtgctatatcttcctcaatcaataagatgcaacaattggagaaacta 22629238  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 22430068 - 22430000
Alignment:
Q  12 gagtaaatatatgagtgctatatcttcctcaatcaatgagatgcaaaaattggagaaactaaatattag 80  Q
    ||||||||||||||||||| ||| ||||||||||||| |||||||  ||||||||||||||||||||||    
T  22430068 gagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaattggagaaactaaatattag 22430000  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 22457355 - 22457305
Alignment:
Q  22 atgagtgctatatcttcctcaatcaatgagatgcaaaaattggagaaacta 72  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22457355 atgagtgctatatcttcctcaatcaatgagatgcaaaaagtggagaaacta 22457305  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 22480336 - 22480286
Alignment:
Q  22 atgagtgctatatcttcctcaatcaatgagatgcaaaaattggagaaacta 72  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22480336 atgagtgctatatcttcctcaatcaatgagatgcaaaaagtggagaaacta 22480286  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 22466803 - 22466743
Alignment:
Q  12 gagtaaatatatgagtgctatatcttcctcaatcaatgagatgcaaaaattggagaaacta 72  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| || |||||||||||    
T  22466803 gagtaaatatatgagtgctatatcttcctcaatcaatcaaatgcaacaaatggagaaacta 22466743  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 22435484 - 22435442
Alignment:
Q  14 gtaaatatatgagtgctatatcttcctcaatcaatgagatgca 56  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  22435484 gtaaatatatgagtgctatatcttcctcaatcaataagatgca 22435442  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 22352579 - 22352544
Alignment:
Q  104 cattcattgatcttgatttgaattcacccccaccta 139  Q
    ||||||||||||| ||||||||||||||||||||||    
T  22352579 cattcattgatctggatttgaattcacccccaccta 22352544  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 22441511 - 22441476
Alignment:
Q  104 cattcattgatcttgatttgaattcacccccaccta 139  Q
    ||||||||||||| ||||||||||||||||||||||    
T  22441511 cattcattgatctggatttgaattcacccccaccta 22441476  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 22054324 - 22054365
Alignment:
Q  32 tatcttcctcaatcaatgagatgcaaaaattggagaaactaa 73  Q
    |||||||||||||||| || |||||||| |||||||||||||    
T  22054324 tatcttcctcaatcaacgaaatgcaaaacttggagaaactaa 22054365  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 22435398 - 22435365
Alignment:
Q  106 ttcattgatcttgatttgaattcacccccaccta 139  Q
    ||||||||||| ||||||||||||||||||||||    
T  22435398 ttcattgatctggatttgaattcacccccaccta 22435365  T

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Target: chr3; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 22466726 - 22466691
Alignment:
Q  104 cattcattgatcttgatttgaattcacccccaccta 139  Q
    ||||||||| ||| ||||||||||||||||||||||    
T  22466726 cattcattggtctggatttgaattcacccccaccta 22466691  T

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