View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5467_low_1 (Length: 867)

Name: NF5467_low_1
Description: NF5467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5467_low_1
NF5467_low_1
[»] chr4 (7 HSPs)
chr4 (446-860)||(46890786-46891200)
chr4 (20-371)||(46890360-46890711)
chr4 (253-371)||(46873181-46873299)
chr4 (71-162)||(46873089-46873180)
chr4 (703-784)||(46873629-46873710)
chr4 (208-279)||(46899152-46899223)
chr4 (71-198)||(46898982-46899109)
[»] chr1 (2 HSPs)
chr1 (703-860)||(48232061-48232215)
chr1 (703-860)||(48237101-48237255)
[»] scaffold0055 (8 HSPs)
scaffold0055 (491-528)||(10677-10714)
scaffold0055 (491-528)||(18210-18247)
scaffold0055 (491-528)||(20439-20476)
scaffold0055 (491-528)||(23678-23715)
scaffold0055 (491-528)||(44760-44797)
scaffold0055 (491-528)||(57485-57522)
scaffold0055 (491-528)||(76176-76213)
scaffold0055 (491-524)||(29522-29555)
[»] scaffold0052 (7 HSPs)
scaffold0052 (491-528)||(8667-8704)
scaffold0052 (491-528)||(20682-20719)
scaffold0052 (491-528)||(40109-40146)
scaffold0052 (491-528)||(43079-43116)
scaffold0052 (491-528)||(55089-55126)
scaffold0052 (491-528)||(73821-73858)
scaffold0052 (491-524)||(66510-66543)
[»] scaffold0515 (1 HSPs)
scaffold0515 (482-526)||(10354-10398)
[»] scaffold0152 (3 HSPs)
scaffold0152 (482-526)||(17921-17965)
scaffold0152 (482-526)||(27974-28018)
scaffold0152 (482-526)||(36750-36794)
[»] chr3 (1 HSPs)
chr3 (208-279)||(19845978-19846049)


Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 446 - 860
Target Start/End: Original strand, 46890786 - 46891200
Alignment:
Q  446 tagatgttgttcagaatgtcattttctgtgatataatgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgcaactcggcttcaaattagag 545  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46890786 tagatgttgttcagaatgtcattttctgtgatataatgtgcaaatggaagaacgtgcgttgagttttgtggggaagtcgcaactcggcttcaaattagag 46890885  T
Q  546 tgtttgattaatggtttatgtgtgtcattttgttgtttgtattgtgcatgatgtttcatgtctggtttgacataaacttgctcctcctacttgttgtctc 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  46890886 tgtttgattaatggtttatgtgtgtcattttgttgtttgtattgtgcatgatgtttcatgtttggtttgacataaacttgctcctcctacttgttgtccc 46890985  T
Q  646 tttgccttgtcttgcataaatgtaccttcctaaggttctgaatgattccatcattgtttaatgatcacattatctccttgttatcacatttctgccataa 745  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46890986 tttgccttgtcttgcataaatgtaccttcctaaggttctgaatgattccatcattgtttaatgatcacattatctccttgttatcaaatttctgccataa 46891085  T
Q  746 atgggctgtggcatggcggactttgtgttagttgccatagtctataccatgactattatacccggcttgtttccaccatatgccgcagctccatgtttat 845  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46891086 atgggctgtggcatggcggactttgtgctagtggccatagtctataccatgactattatacccggcttgtttccaccatatgccgcagctccatgtttat 46891185  T
Q  846 aagccatattcttcg 860  Q
    |||||||||| ||||    
T  46891186 aagccatatttttcg 46891200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 371
Target Start/End: Original strand, 46890360 - 46890711
Alignment:
Q  20 aggtcggatgcagctgggaaatcatggtgaagatnnnnnnntcatacaaacgatgaaactgtgcaagaattattggaatggggaggaatgtccatatgga 119  Q
    |||||||||||||||||||||||||| | |||||       |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46890360 aggtcggatgcagctgggaaatcatgctaaagataaaaaaatcatacaaacaatgaaactgtgcaagaattattgcaatggggaggaatgtccatatgga 46890459  T
Q  120 gataactgtatattccttcatgaagatcctgcacagtttagggatgattccttgaaatcgagagagtgctccgcaataaccattgaaactaataatttgg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46890460 gataactgtatattccttcatgaagatcctgcacagtttagggatgattccttgaaattgagagagtgctccgcaataaccattgaaactaataatttgg 46890559  T
Q  220 aaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtgtcgcaattggaagcatacaggatattgttcctttggaatgaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46890560 aaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtgtcgcaattggaagcatacaggatattgttcctttggaatgaa 46890659  T
Q  320 ctgtctctttgctcatggtgaagaaggtaacaataactcattttgcttattg 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46890660 ctgtctctttgctcatggtgaagaaggtaacaataactcattttgcttattg 46890711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 46873181 - 46873299
Alignment:
Q  253 gcacttatcggaagactaagctgtgtcgcaattggaagcatacaggatattgttcctttggaatgaactgtctctttgctcatggtgaagaaggtaacaa 352  Q
    ||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||    
T  46873181 gcacttatcggaagactaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctcatggtgaagaaggtaacaa 46873280  T
Q  353 taactcattttgcttattg 371  Q
    |||||||||||| ||||||    
T  46873281 taactcattttgattattg 46873299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 46873089 - 46873180
Alignment:
Q  71 gatgaaactgtgcaagaattattggaatggggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttaggg 162  Q
    |||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  46873089 gatgaaactgtgcaagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggg 46873180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 703 - 784
Target Start/End: Original strand, 46873629 - 46873710
Alignment:
Q  703 ttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgttagttgccata 784  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |  || ||||||||| |||||||||| |||||| ||||    
T  46873629 ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggtggactttgtgctagttggcata 46873710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 46899152 - 46899223
Alignment:
Q  208 ctaataatttggaaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtgtc 279  Q
    |||| |||||||||||||  |||||| ||||||||| |||||||||  ||||| ||||||||||||||||||    
T  46899152 ctaacaatttggaaggcattagggctgtgaacaagccagcaaggagtgcttattggaagactaagctgtgtc 46899223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 46898982 - 46899109
Alignment:
Q  71 gatgaaactgtgcaagaattattggaatggggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttagggatgattcc 170  Q
    |||||| ||||| ||||| ||||  | ||| ||||||||||| ||||| ||||| ||||  || |||||||| ||||||||   ||||||||||| |||     
T  46898982 gatgaagctgtgtaagaagtattacattggtgaggaatgtccttatggtgataagtgtagctttcttcatgaggatcctgctaggtttagggatgcttct 46899081  T
Q  171 ttgaaatcgagagagtgctccgcaataa 198  Q
    | |||| | |||||||| || |||||||    
T  46899082 tggaaaacaagagagtgttctgcaataa 46899109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 703 - 860
Target Start/End: Complemental strand, 48232215 - 48232061
Alignment:
Q  703 ttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgttagttgccatagtctataccatgactatt 802  Q
    |||| |||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||||| |||  | |||||||  |||||||||||||    
T  48232215 ttaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtc--taccatgactatt 48232118  T
Q  803 atacccggcttgtttccaccatatgccgcagctccatgtttataagccatattcttcg 860  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||| ||| ||||    
T  48232117 atacccggcttg-ttccaccatatgcagaagctccatgtttataagccagatttttcg 48232061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 703 - 860
Target Start/End: Complemental strand, 48237255 - 48237101
Alignment:
Q  703 ttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgttagttgccatagtctataccatgactatt 802  Q
    |||| |||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||||| |||  | |||||||  |||||||||||||    
T  48237255 ttaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtc--taccatgactatt 48237158  T
Q  803 atacccggcttgtttccaccatatgccgcagctccatgtttataagccatattcttcg 860  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||| ||| ||||    
T  48237157 atacccggcttg-ttccaccatatgcagaagctccatgtttataagccagatttttcg 48237101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Original strand, 10677 - 10714
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  10677 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 10714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Original strand, 18210 - 18247
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  18210 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 18247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 20476 - 20439
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20476 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 20439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 23715 - 23678
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  23715 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 23678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 44797 - 44760
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  44797 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 44760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 57522 - 57485
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  57522 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 57485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 76213 - 76176
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  76213 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 76176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 524
Target Start/End: Original strand, 29522 - 29555
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcg 524  Q
    ||||||||||||||||| ||||||||||||||||    
T  29522 ggaagaacgtgcgttgagttttgtggggaagtcg 29555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 8704 - 8667
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  8704 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 8667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 20719 - 20682
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20719 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 20682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Original strand, 40109 - 40146
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  40109 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 40146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 43116 - 43079
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  43116 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 43079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 55126 - 55089
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  55126 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 55089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 73858 - 73821
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 528  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  73858 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 73821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 524
Target Start/End: Complemental strand, 66543 - 66510
Alignment:
Q  491 ggaagaacgtgcgttgatttttgtggggaagtcg 524  Q
    ||||||||||||||||| ||||||||||||||||    
T  66543 ggaagaacgtgcgttgagttttgtggggaagtcg 66510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 482 - 526
Target Start/End: Original strand, 10354 - 10398
Alignment:
Q  482 tgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgca 526  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  10354 tgtgaaaatggaagaacgtgggttgagttttgtggggaagtcgca 10398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 482 - 526
Target Start/End: Original strand, 17921 - 17965
Alignment:
Q  482 tgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgca 526  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  17921 tgtggaaatggaagaacgtgggttgagttttgtggggaagtcgca 17965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 482 - 526
Target Start/End: Original strand, 27974 - 28018
Alignment:
Q  482 tgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgca 526  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  27974 tgtgaaaatggaagaacgtgggttgagttttgtggggaagtcgca 28018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 482 - 526
Target Start/End: Original strand, 36750 - 36794
Alignment:
Q  482 tgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgca 526  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  36750 tgtgaaaatggaagaacgtgggttgagttttgtggggaagtcgca 36794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 19845978 - 19846049
Alignment:
Q  208 ctaataatttggaaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtgtc 279  Q
    |||||||||||||||| |  ||| || ||||||||| ||||||| |||||||  |||||| |||||||||||    
T  19845978 ctaataatttggaaggaaataggtctgtgaacaagccagcaaggggcacttactggaagattaagctgtgtc 19846049  T

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