View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5467_low_3 (Length: 273)
Name: NF5467_low_3
Description: NF5467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5467_low_3 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 32249419 - 32249685
Alignment:
| Q |
1 |
cagtccttaatacttctttggtgaatgaaccccatctgttggtcagaaatgatagtaggcatgattggagcaagtctgacagcaataacttttgaaatga |
100 |
Q |
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| T |
32249419 |
cagtccttaatacttctttggtgaatgaaccccatctgttggtcagaaatgatagtaggcatgattggagcaagtctgacagcaataacttttgaaatga |
32249518 |
T |
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| Q |
101 |
ttttgaatttaaaattagccattgcaataggtttgtattggtctatagatgaagcatttggaattttcggaagaagagcaataatgttagagttgaatcc |
200 |
Q |
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| T |
32249519 |
ttttgaatttaaaattagccattgcaataggtctgtattggtctatagatgaagcatttggaatttttggaagaagagcaataatgttagagttgaatcc |
32249618 |
T |
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| Q |
201 |
tggcaaaatccaactggtggtgaagaattctagaacaactttaactacatcttctttgatgatgtcc |
267 |
Q |
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| T |
32249619 |
tggcaaaatccaactggtggtgaagaattctagaacagctttaactacatcttctttgatgatgtcc |
32249685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 30900703 - 30900507
Alignment:
| Q |
16 |
ctttggtgaatgaaccccatctgttggtcagaaatgatagtaggcatgattggagcaagtctgacagcaataacttttgaaatgattttgaatttaaaat |
115 |
Q |
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| T |
30900703 |
ctttgatgaatgaatcctatatgttcttcagagataattgtaggcatgattggagcaagtttatctgcaataacatttgatataatcttgaatttgaaat |
30900604 |
T |
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| Q |
116 |
tagccattgcaataggtttgtattggtctatagatgaagcatttggaattttcggaagaagagcaataatgttagagttgaatcctggcaaaatcca |
212 |
Q |
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| T |
30900603 |
ttaccattataataggtctgaaatgatctatagaagaagcatttagagttttaggaagaagagaaataatgtttgaattgaagcctggaaatatcca |
30900507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 21854222 - 21854409
Alignment:
| Q |
43 |
tcagaaatgatagtaggcatgattggagcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattgcaataggtttgtattggt |
142 |
Q |
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||||||||||| | ||||||||||||||||||||| | |||| || ||||| ||||| ||||| ||||| || ||||||| ||||||| |||| |||| |
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| T |
21854222 |
tcagaaatgatggaaggcatgattggagcaagtctatcttcaatgacctttgagatgatcttgaaattaaagttggccattgaaataggtctgtactggt |
21854321 |
T |
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| Q |
143 |
ctatagatgaagcatttggaattttcggaagaagagcaataatgttagagttgaatcctggcaaaatccaactggtggtgaagaattc |
230 |
Q |
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| T |
21854322 |
caattgatgaggcatttggcacttttggaagaagtgcaataatattggagttatatcctagcaaaatccaactagaggtgaagaattc |
21854409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 127793 - 127714
Alignment:
| Q |
70 |
gcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattgcaataggtttgtattggtctataga |
149 |
Q |
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| T |
127793 |
gcaagtctgtctgctagaacttttgaaataactttgaatttaaaattagccattgcaattggcctatattggtctataga |
127714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 21920618 - 21920515
Alignment:
| Q |
22 |
tgaatgaaccccatctgttggtcagaaatgatagtaggcatgattggagcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagcca |
121 |
Q |
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||||||||||||||||||| | ||| |||| | ||||||||| ||||||| |||||| |||||| ||||| || ||||| ||||| ||||| |||| |
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| T |
21920618 |
tgaatgaaccccatctgttcctgggaagtgatgtttggcatgatttgagcaagcctgacaacaataatctttgagattattttaaattttaaatttgcca |
21920519 |
T |
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| Q |
122 |
ttgc |
125 |
Q |
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|||| |
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| T |
21920518 |
ttgc |
21920515 |
T |
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