View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5467_low_4 (Length: 245)
Name: NF5467_low_4
Description: NF5467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5467_low_4 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 45151177 - 45151309
Alignment:
| Q |
22 |
tatcacattggtatttatactactaggctatataactgattttgttaaacatctaacatggcttaactagctcttaagtgttaatagataactaagaact |
121 |
Q |
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| T |
45151177 |
tatcacataggtgtgtatactactaggctatataactgattttgttaaacatctaacagggcttaactagctcttaagtgttaacagataactgagaact |
45151276 |
T |
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| Q |
122 |
aattcctattccttgtacataattttgactgat |
154 |
Q |
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| T |
45151277 |
aattcctattccttgtacataattttgactgat |
45151309 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 43254754 - 43254813
Alignment:
| Q |
184 |
tttattatgaattaagaatacnnnnnnnatatcattttacatttatcagctagttgatccgc |
245 |
Q |
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| T |
43254754 |
tttattatgaattaagaatacccttt--atatcattttacatttatcagctagttgaaccgc |
43254813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 20805640 - 20805699
Alignment:
| Q |
184 |
tttattatgaattaagaatacnnnnnnnatatcattttacatttatcagctagttgatccgc |
245 |
Q |
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| T |
20805640 |
tttattatgaattaagaatacccttt--atatcattttacatttatcagctagttgaaccgc |
20805699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 23867383 - 23867324
Alignment:
| Q |
184 |
tttattatgaattaagaatacnnnnnnnatatcattttacatttatcagctagttgatccgc |
245 |
Q |
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| T |
23867383 |
tttattatgaattaagaatacccttt--atatcattttacatttatcagctagttgaaccgc |
23867324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 9769232 - 9769199
Alignment:
| Q |
212 |
atatcattttacatttatcagctagttgatccgc |
245 |
Q |
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| T |
9769232 |
atatcattttacatttatcagctaattgatccgc |
9769199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 46247252 - 46247220
Alignment:
| Q |
213 |
tatcattttacatttatcagctagttgatccgc |
245 |
Q |
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| T |
46247252 |
tatcattttacatttatcagctagttgaaccgc |
46247220 |
T |
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