View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5467_low_5 (Length: 218)
Name: NF5467_low_5
Description: NF5467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5467_low_5 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 4203108 - 4202961
Alignment:
| Q |
17 |
agattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaagggacgtggttatgattgtagtactcatttgaagagtact |
116 |
Q |
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| T |
4203108 |
agattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaagggacgtggttatgattgtagtactcatttgaagagtact |
4203009 |
T |
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| Q |
117 |
tggattccttcgacacgtcgtcgagaacgggaggtggagatgtttgcc |
164 |
Q |
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| T |
4203008 |
tggattccttcgacacgtcgtcgagaacgggaggtggagatgtttgcc |
4202961 |
T |
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Target: scaffold0363 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 17064 - 16960
Alignment:
| Q |
17 |
agattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaagggacgtggttatgattgtagtactcatttgaagagtact |
116 |
Q |
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| T |
17064 |
agattgtggaaatagagctaagaaagattgtagctataaaagatgtaggacttgttgtaaaggtcgtggatttgattgtagtactcacgtgaagagcacg |
16965 |
T |
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| Q |
117 |
tggat |
121 |
Q |
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| T |
16964 |
tggat |
16960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 14512749 - 14512853
Alignment:
| Q |
17 |
agattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaagggacgtggttatgattgtagtactcatttgaagagtact |
116 |
Q |
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| T |
14512749 |
agattgtggaaatagagctaagaaagattgtagctataaaagatgtaggacttgttgtaaaggtcgtggatttgattgtagtactcacgtgaagagcacg |
14512848 |
T |
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| Q |
117 |
tggat |
121 |
Q |
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||||| |
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| T |
14512849 |
tggat |
14512853 |
T |
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