View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468-Insertion-1 (Length: 852)
Name: NF5468-Insertion-1
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 102 - 440
Target Start/End: Original strand, 7916897 - 7917234
Alignment:
| Q |
102 |
tcatgcatgctttctgcatttttcttatttaggtgaaaaacaagcnnnnnnnncttatttaggtgaaaaacaagcttctagtacaaaacaaaatcctaac |
201 |
Q |
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| T |
7916897 |
tcatgcatgctttctgcatttttcttatttaggtgaaaaacaagcttttttt-cttatttaggtgaaaaacaagcttctagtacaaaacaaaatcctaac |
7916995 |
T |
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| Q |
202 |
gtgaaaaacaagtttctagtacaaagaaaaatactaacattattaattaaaaaatcaaaagtcagatatggttaaatgccaatcaatctttaaaaactag |
301 |
Q |
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| T |
7916996 |
gtgaaaaacaagtttctagtacaaagaaaaatactataattattaattaaaaaatcaaaagtcatatatggttaaatgccaatcaatctttaaaaactag |
7917095 |
T |
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| Q |
302 |
tagtaaaaaggaacgagtagttaaccttaaaagcaagagtccaggtttgagtcaacctgtgtgctgtgatagagtcttgggtcagcaaaggtgcaaggtt |
401 |
Q |
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| T |
7917096 |
tagtaaaaaggaacgagtagttaaccttaaaagcaagagtccaggtttgagtcaacctgtgtgctttgatagagtcttggttcagcaaaggtgcaaggtt |
7917195 |
T |
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| Q |
402 |
aaaaattgaggatattcaaattatgtataaactacgaaa |
440 |
Q |
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| T |
7917196 |
aaaaattgaggatattcaaattatgtataaactacgaaa |
7917234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 776 - 845
Target Start/End: Complemental strand, 7935102 - 7935032
Alignment:
| Q |
776 |
ctctcattccctccaagggttcccaatattgagaccaacagcccaaattgaattgacttgg-taatgaaga |
845 |
Q |
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| T |
7935102 |
ctctcattccctcaaagtgcttccaatattgagaccaacaagccatattgaattgacttggttaatgaaga |
7935032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 7916396 - 7916434
Alignment:
| Q |
16 |
gtatgccacttggcaacattcaaaactttgttgcaaagag |
55 |
Q |
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| T |
7916396 |
gtatgccacttg-caacattcaaaactttgttgcaaagag |
7916434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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