View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5468-Insertion-2 (Length: 579)

Name: NF5468-Insertion-2
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5468-Insertion-2
NF5468-Insertion-2
[»] chr1 (7 HSPs)
chr1 (239-579)||(32196745-32197079)
chr1 (8-157)||(32196515-32196664)
chr1 (443-556)||(11341298-11341412)
chr1 (443-556)||(11499317-11499431)
chr1 (239-272)||(29362619-29362652)
chr1 (239-271)||(19920873-19920905)
chr1 (239-271)||(29489287-29489319)
[»] chr3 (4 HSPs)
chr3 (239-286)||(1031340-1031387)
chr3 (239-271)||(28263656-28263688)
chr3 (239-271)||(34021391-34021423)
chr3 (239-271)||(54379417-54379449)
[»] chr8 (2 HSPs)
chr8 (239-272)||(7129644-7129677)
chr8 (239-272)||(32185593-32185626)
[»] chr7 (4 HSPs)
chr7 (240-273)||(37149401-37149434)
chr7 (239-271)||(10161858-10161890)
chr7 (239-271)||(26041421-26041453)
chr7 (239-271)||(27164765-27164797)
[»] chr2 (2 HSPs)
chr2 (239-272)||(36909770-36909803)
chr2 (239-271)||(44484584-44484616)
[»] scaffold0514 (1 HSPs)
scaffold0514 (239-271)||(1424-1456)
[»] chr6 (1 HSPs)
chr6 (240-272)||(17835724-17835756)
[»] chr5 (1 HSPs)
chr5 (239-271)||(30574305-30574337)
[»] chr4 (3 HSPs)
chr4 (239-271)||(8026692-8026724)
chr4 (239-271)||(19315017-19315049)
chr4 (239-271)||(41495124-41495156)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 239 - 579
Target Start/End: Original strand, 32196745 - 32197079
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtcatagaagctgtaccaataactttgtattgtatcatagtgatattttagagtttattagacctaataaa 338  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196745 gaccaataagaagaaagaaaaaaaaatttgtcatagaagttgtaccaataactttgtattgtatcatagtgatattttagagtttattagacctaataaa 32196844  T
Q  339 ctatctatagtgacatagtggttcnnnnnnngtccatgcaccatattaaattaaatacaaatagtataagccgcaaaacctacaactatatatatttttt 438  Q
    ||||    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196845 ctat----agtgacatagtggttctttttttgtccatgcaccatattaaattaaatacaaatagtataagccgcaaaacctacaactatatatatttttt 32196940  T
Q  439 cttcatgtgagtgctacaactcactttgttttttccaacctctgacggaacaacaattggaaattaagtcaaacaatcaacaagagcttggtaaataaaa 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32196941 cttcatgtgagtgctacaactcactttgttttttccaacctctgacggaacaacaattggaaattaagtcaaacaatcaacaagagcttgctaaataaaa 32197040  T
Q  539 aggctaggaatcagaaaaaagataaacacaacatcagattc 579  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  32197041 aggctaggaatcag--aaaagataaacacaacatcagattc 32197079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 32196515 - 32196664
Alignment:
Q  8 tgaactgcatttcatgatggtgggacgaaaagattatctgtttactagcatagaaagagcttttcatagtaattctgatgtactaagctggattttgttg 107  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32196515 tgaactgcatttcatgatgatggggcaaaaagattatctgtttactagcatagaaagagcttttcatagtaatgctgatgtactaagctggattttgttg 32196614  T
Q  108 gtctttttgttagttcagcagtaaagttagcctatttgtacaaccctttt 157  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32196615 gtctttttgttagttcagcattaaagttagcctatttgtacaaccctttt 32196664  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 443 - 556
Target Start/End: Complemental strand, 11341412 - 11341298
Alignment:
Q  443 atgtgagtgctacaactcactttgttttt-tccaacctctgacggaacaacaattggaaattaagtcaaacaatcaacaagagcttggtaaataaaaagg 541  Q
    |||||||||||||| ||||||| |||||| |||||| | ||||   |||| ||||| ||||||||||||||||||||||| |||| | ||||||| ||||    
T  11341412 atgtgagtgctacagctcacttcgtttttctccaacttatgaccacacaagaattgtaaattaagtcaaacaatcaacaacagctagctaaataacaagg 11341313  T
Q  542 ctaggaatcagaaaa 556  Q
    ||| |||||||||||    
T  11341312 ctatgaatcagaaaa 11341298  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 443 - 556
Target Start/End: Complemental strand, 11499431 - 11499317
Alignment:
Q  443 atgtgagtgctacaactcactttgttttt-tccaacctctgacggaacaacaattggaaattaagtcaaacaatcaacaagagcttggtaaataaaaagg 541  Q
    |||||||||||||| ||||||| |||||| |||||| | ||||   |||| ||||| ||||||||||||||||||||||| |||| | ||||||| ||||    
T  11499431 atgtgagtgctacagctcacttcgtttttctccaacttatgaccacacaagaattgtaaattaagtcaaacaatcaacaacagctagctaaataacaagg 11499332  T
Q  542 ctaggaatcagaaaa 556  Q
    ||| |||||||||||    
T  11499331 ctatgaatcagaaaa 11499317  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 29362652 - 29362619
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtcat 272  Q
    |||||||||||||| |||||||||||||||||||    
T  29362652 gaccaataagaagagagaaaaacaaagttgtcat 29362619  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 19920873 - 19920905
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    |||||||||||||| ||||||||||||||||||    
T  19920873 gaccaataagaagagagaaaaacaaagttgtca 19920905  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 29489319 - 29489287
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    ||||||||||||||||||||||||| |||||||    
T  29489319 gaccaataagaagaaagaaaaacaaggttgtca 29489287  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 1031387 - 1031340
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtcatagaagctgtaccaa 286  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  1031387 gaccaataagaagaaagaaaaataaagttgtcataaaagttgtaccaa 1031340  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 28263656 - 28263688
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    |||||||||||||||||||||| ||||||||||    
T  28263656 gaccaataagaagaaagaaaaataaagttgtca 28263688  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 34021423 - 34021391
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    |||||||||||||| ||||||||||||||||||    
T  34021423 gaccaataagaagagagaaaaacaaagttgtca 34021391  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 54379417 - 54379449
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    |||||||||||||| ||||||||||||||||||    
T  54379417 gaccaataagaagagagaaaaacaaagttgtca 54379449  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 7129644 - 7129677
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtcat 272  Q
    |||||||||||||| |||||||||||||||||||    
T  7129644 gaccaataagaagagagaaaaacaaagttgtcat 7129677  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 32185626 - 32185593
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtcat 272  Q
    |||||||||||||| |||||||||||||||||||    
T  32185626 gaccaataagaagagagaaaaacaaagttgtcat 32185593  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 37149434 - 37149401
Alignment:
Q  240 accaataagaagaaagaaaaacaaagttgtcata 273  Q
    |||||||||||||||||||||||| |||||||||    
T  37149434 accaataagaagaaagaaaaacaaggttgtcata 37149401  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 10161890 - 10161858
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    ||||||||| |||||||||||||||||||||||    
T  10161890 gaccaataaaaagaaagaaaaacaaagttgtca 10161858  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 26041421 - 26041453
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    |||||||||||||| ||||||||||||||||||    
T  26041421 gaccaataagaagagagaaaaacaaagttgtca 26041453  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 27164797 - 27164765
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    |||||||||||||| ||||||||||||||||||    
T  27164797 gaccaataagaagagagaaaaacaaagttgtca 27164765  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 36909803 - 36909770
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtcat 272  Q
    |||||||||||||| |||||||||||||||||||    
T  36909803 gaccaataagaagagagaaaaacaaagttgtcat 36909770  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 44484616 - 44484584
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    |||||||||||||| ||||||||||||||||||    
T  44484616 gaccaataagaagagagaaaaacaaagttgtca 44484584  T

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Target: scaffold0514 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 1456 - 1424
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    |||||||||||||| ||||||||||||||||||    
T  1456 gaccaataagaagagagaaaaacaaagttgtca 1424  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 17835724 - 17835756
Alignment:
Q  240 accaataagaagaaagaaaaacaaagttgtcat 272  Q
    ||||||||||||| |||||||||||||||||||    
T  17835724 accaataagaagagagaaaaacaaagttgtcat 17835756  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 30574337 - 30574305
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    |||||||||||||| ||||||||||||||||||    
T  30574337 gaccaataagaagagagaaaaacaaagttgtca 30574305  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 8026724 - 8026692
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    |||||||||||||| ||||||||||||||||||    
T  8026724 gaccaataagaagagagaaaaacaaagttgtca 8026692  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 19315017 - 19315049
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    |||||||||||||||||||||| ||||||||||    
T  19315017 gaccaataagaagaaagaaaaagaaagttgtca 19315049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 41495124 - 41495156
Alignment:
Q  239 gaccaataagaagaaagaaaaacaaagttgtca 271  Q
    |||||||||||||| ||||||||||||||||||    
T  41495124 gaccaataagaagagagaaaaacaaagttgtca 41495156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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