View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468-Insertion-3 (Length: 570)
Name: NF5468-Insertion-3
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 6e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 82 - 278
Target Start/End: Original strand, 40495947 - 40496154
Alignment:
| Q |
82 |
tggtaatgacgtgttgcattgaatatcatgccactagattacttaaacaaacnnnnnnnnnngttaatagtgtttggatgacannnnnnnaagtaatgta |
181 |
Q |
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| T |
40495947 |
tggtaatgacgtgttgcattgaatatcatgcccctagattacttaaacaaataaaaaaaaaaactaatagtgtttggatgacatttttttaagtaatgta |
40496046 |
T |
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| Q |
182 |
atattaaaggataattcaaaattttctatgtaaattttattgtttggat-----------gaatttttaaaacaaagatattttatcaagtattcttttg |
270 |
Q |
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| T |
40496047 |
atattaaaggataattcaaaattttctatgtaaattttattgtttggatgaattttttgagaatttttaaaacaaagatattttatcaagtattcttttg |
40496146 |
T |
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| Q |
271 |
aattatac |
278 |
Q |
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|||||||| |
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| T |
40496147 |
aattatac |
40496154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 357 - 508
Target Start/End: Original strand, 40496233 - 40496384
Alignment:
| Q |
357 |
gatccctatacgttttcaaaaattataaattgtcctataaatattcaaaagggtctgattcctataaac-tttcaaaaattgcaaatcgatccttannnn |
455 |
Q |
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| T |
40496233 |
gatccctataagttttcaaaaattataaattgtcctataaatattcaaaa-ggtctgattcctataaacttttaaaaaattgcaaatcgatccttatttt |
40496331 |
T |
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| Q |
456 |
nnnagaattacaattttatcccaaaattttaaaattatgcataatagtcccta |
508 |
Q |
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| T |
40496332 |
tttagaattacaattttattccaaaattttaaaattatgcatattagtcccta |
40496384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 30914314 - 30914254
Alignment:
| Q |
172 |
aagtaatgtaatattaaaggataattcaaaattttctatgtaaattttattgtttggatga |
232 |
Q |
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| T |
30914314 |
aagtaatataattttataggataattcaatatcttcaatgttaattatattgtttggatga |
30914254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 30553485 - 30553542
Alignment:
| Q |
174 |
gtaatgtaatattaaaggataattcaaaattttctatgtaaattttattgtttggatg |
231 |
Q |
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| T |
30553485 |
gtaatgtgattttagaggataattcaaccttttcaatgtaaattttattggttggatg |
30553542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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