View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468-Insertion-4 (Length: 453)
Name: NF5468-Insertion-4
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Original strand, 2862002 - 2862444
Alignment:
| Q |
8 |
gtgagaattacatgggatgattttaaagttggatttgttagagctgcaattccacaaattcctttatccattttgaattcagtcattgcggtttgtaaac |
107 |
Q |
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| T |
2862002 |
gtgagaattacatgggatgattttaaagttggatttgttagagctgcaattccacaaattcctttatcgattttgaattcagtaattgcggtttgtaaac |
2862101 |
T |
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| Q |
108 |
tgtccggagatttatttccggacagagaagcttctgctatgaaggtttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgcc |
207 |
Q |
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| T |
2862102 |
tgtccggagatttatttcccgacagagaagcttctgctatgaaggtttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgcc |
2862201 |
T |
|
| Q |
208 |
ttgttgccatggagctggtggattggctggtcagtataggtttggaggtaggagtggtgcttctgttgtttttcttggggttggtaaattgttgattgct |
307 |
Q |
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| T |
2862202 |
ttgttgccatggagctggtggattggctggtcagtataggtttggaggtaggagtggtgcttctgttgtttttcttggggttggtaaattgttgattgct |
2862301 |
T |
|
| Q |
308 |
ttggtttttgggaactcttttggaagaattttgggtcagtttcctattggcatattaggggtgttgcttttgtttgctgggattgagttggctatggctt |
407 |
Q |
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| T |
2862302 |
ttggtttttgggaactcttttggaagaattttgggtcagtttcctattggcatattaggggtgttgcttttgtttgctgggattgaattggctatggctt |
2862401 |
T |
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| Q |
408 |
ctaaagatatgaatagtaaacaagagtcttttattatgtttgt |
450 |
Q |
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| T |
2862402 |
ctaaagatatgaatagtaaacaagagtcttttattatgtttgt |
2862444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 264
Target Start/End: Original strand, 1875682 - 1875793
Alignment:
| Q |
153 |
tttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatggagctggtggattggctggtcagtataggtttgg |
252 |
Q |
| |
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||||||||| ||||| |||||||||| |||||||||||||||||||| ||||| | ||||||||| ||||||||| | || || ||||||| ||||| |
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| T |
1875682 |
tttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttgg |
1875781 |
T |
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| Q |
253 |
aggtaggagtgg |
264 |
Q |
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| T |
1875782 |
tggaaggagtgg |
1875793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 264
Target Start/End: Original strand, 1808078 - 1808189
Alignment:
| Q |
153 |
tttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatggagctggtggattggctggtcagtataggtttgg |
252 |
Q |
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||||||||| |||||| | |||||||| ||||||| ||||||||||||| |||| ||| ||||| ||||| ||| | || || ||||||| ||||| |
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| T |
1808078 |
tttcagtgacagttggactaatgaatttagttggttcttggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttgg |
1808177 |
T |
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| Q |
253 |
aggtaggagtgg |
264 |
Q |
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||| |||||||| |
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| T |
1808178 |
aggaaggagtgg |
1808189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 422
Target Start/End: Complemental strand, 49993100 - 49993022
Alignment:
| Q |
344 |
cagtttcctattggcatattaggggtgttgcttttgtttgctgggattgagttggctatggcttctaaagatatgaata |
422 |
Q |
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||||||||| | || || |||||||||||| | ||||||||||||||||| || |||||||||| || |||||||||| |
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| T |
49993100 |
cagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaata |
49993022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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