View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5468-Insertion-7 (Length: 185)
Name: NF5468-Insertion-7
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468-Insertion-7 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 7e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 7e-97
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 1458641 - 1458459
Alignment:
| Q |
3 |
caacaaactgtaactgtaacttcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcatt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1458641 |
caacaaactgtaactgtaacttcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcatt |
1458542 |
T |
|
| Q |
103 |
tgtaatctgtttagagaaccctaccatccactcgcggggggatcatttaaagccagagcaagaagactcggtatggactagcc |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1458541 |
tgtaatctgtttagagaaccctaccatccactcgcgaggggatcatttaaagccagagcaagaagactcggtatggactagcc |
1458459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 7e-97
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 2428348 - 2428166
Alignment:
| Q |
3 |
caacaaactgtaactgtaacttcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcatt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2428348 |
caacaaactgtaactgtaacttcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcatt |
2428249 |
T |
|
| Q |
103 |
tgtaatctgtttagagaaccctaccatccactcgcggggggatcatttaaagccagagcaagaagactcggtatggactagcc |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2428248 |
tgtaatctgtttagagaaccctaccatccactcgcgaggggatcatttaaagccagagcaagaagactcggtatggactagcc |
2428166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University