View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5468_high_15 (Length: 303)
Name: NF5468_high_15
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 52109010 - 52109297
Alignment:
| Q |
1 |
ttgaatagtaaaaccctaaaattgtttgaaattgtttgggaatttggaagtggatttggatttaattggtgagaaattagcttagaaacattaacattgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52109010 |
ttgaatagtaaaaccctaaaattgtttgaaatt---tggggatttggaagtggatttggatttaattggtgagaaattagcttggaaacattaacattgc |
52109106 |
T |
|
| Q |
101 |
gtgatgaaagtatattgaggaattttcttcttgtgaacattgatttgacagtggaagtgaagcactgagtgcagaaatatggagtgtggtgaaaatgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52109107 |
gtgatgaaagtatattgaggaattttcttcttgtgaacattgatttgacagtggaagtgaagcactgagtgcagaaatatggagtgtgatgaaaatgaag |
52109206 |
T |
|
| Q |
201 |
aaggtggcttcaagtgtgaagaaaacagtgttcctaaagaaattttgaggtttcaaaagagtaatgaattaagcataagtcaccacaggtt |
291 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
52109207 |
aaggtgacttcaagtgtgaagaaaacagtgttcctaaagaaattttgaggtttcaaaagagtaatgaattaagcataattcaccaccggtt |
52109297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 44526207 - 44526294
Alignment:
| Q |
96 |
attgcgtgatgaaagtatattgaggaattttcttcttgtgaacattgatttgacagtggaagtgaagcactgagtgcagaaatatgga |
183 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||| |||||||| |||||| |
|
|
| T |
44526207 |
attgcgtgatgagaatatagtgaggaattttcttcttgtgagcattgatttgatagaggaagtgaagcactgggtgcagaattatgga |
44526294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 44520342 - 44520388
Alignment:
| Q |
45 |
tggaagtggatttggatttaattggtgagaaattagcttagaaacat |
91 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
44520342 |
tggaagtgcatttggatataattggtgtgaaattagcttagaaacat |
44520388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University