View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5468_high_16 (Length: 302)
Name: NF5468_high_16
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 16471618 - 16471326
Alignment:
| Q |
1 |
tacaacgggatagaaaacttatggttgattgaga---------aaaactgaatgttgaacactttataagggagatgactcatatacctagtgtggtgtc |
91 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16471618 |
tacaacgggatagaaaacttctggttgattgagggggagatagaaaactgaatgttgaacactttataagggacatgactcatatacctagtgtggtgtc |
16471519 |
T |
|
| Q |
92 |
aacctctcgttcagctaactgtctttatcattttggcaacttaggattgttttatgattggtttgttccgttgtgaaatttgagatctttacatgtgttg |
191 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16471518 |
aacctctcattcagctaactgtctttatcattttggcaacttagaattgttttatgattggtttgttccgttgtgaaatttgagatctttacatgtgttg |
16471419 |
T |
|
| Q |
192 |
tattttgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtatatgttg |
284 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16471418 |
tattatgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtattaaacaagatcaatggagtatatgttg |
16471326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 81 - 284
Target Start/End: Complemental strand, 16464504 - 16464304
Alignment:
| Q |
81 |
agtgtggtgtcaacctctcgttcagctaactgtctttatcattttggcaacttaggattgttttatgattggtttgttccgttgtgaaatttgagatctt |
180 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16464504 |
agtgtggtgtcaacctctcattcagctaactgtct--atcattttggcaacttagaattgttt-atgattggtttattccgttgtgaaatttgagatctt |
16464408 |
T |
|
| Q |
181 |
tacatgtgttgtattttgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtatat |
280 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16464407 |
tacatgtgctgtatttttcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtatat |
16464308 |
T |
|
| Q |
281 |
gttg |
284 |
Q |
| |
|
|||| |
|
|
| T |
16464307 |
gttg |
16464304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 16493879 - 16493798
Alignment:
| Q |
203 |
atgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtatatgttg |
284 |
Q |
| |
|
||||||| | |||| |||||| ||| ||| ||||||||||| ||| |||| || ||||||||||||||| |||||||||||| |
|
|
| T |
16493879 |
atgtttgagaacaggacagaactggaattagttgaggaaatcgctatggacgttctaaacaagatcaatcgagtatatgttg |
16493798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 44950366 - 44950244
Alignment:
| Q |
162 |
ttgtgaaatttgagatctttacatgtgttgtattttgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaa |
261 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
44950366 |
ttgtaaaatttgagatctttacatgtgctgtatttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatggatgtgctaaa |
44950267 |
T |
|
| Q |
262 |
caagatcaatggagtatatgttg |
284 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
44950266 |
caagatcaatcaagtatatgttg |
44950244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University