View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5468_high_27 (Length: 253)

Name: NF5468_high_27
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5468_high_27
NF5468_high_27
[»] chr2 (20 HSPs)
chr2 (1-227)||(11913718-11913944)
chr2 (44-238)||(1928676-1928870)
chr2 (44-202)||(37861300-37861457)
chr2 (44-239)||(37917900-37918096)
chr2 (43-200)||(38975243-38975400)
chr2 (44-200)||(45166938-45167093)
chr2 (44-202)||(20283362-20283520)
chr2 (44-239)||(2979700-2979895)
chr2 (44-202)||(30728185-30728343)
chr2 (44-202)||(747021-747177)
chr2 (44-200)||(36554855-36555012)
chr2 (44-201)||(32037051-32037208)
chr2 (44-189)||(29198870-29199016)
chr2 (56-239)||(1857726-1857919)
chr2 (151-202)||(22336259-22336310)
chr2 (44-83)||(45168835-45168874)
chr2 (60-108)||(34108924-34108972)
chr2 (197-239)||(15615584-15615626)
chr2 (152-202)||(29198662-29198711)
chr2 (151-200)||(25740394-25740442)
[»] chr8 (18 HSPs)
chr8 (44-239)||(32776826-32777020)
chr8 (44-202)||(30592054-30592212)
chr8 (44-239)||(26849171-26849377)
chr8 (44-202)||(37806945-37807104)
chr8 (44-202)||(43204238-43204397)
chr8 (44-198)||(39154188-39154342)
chr8 (48-202)||(4860119-4860275)
chr8 (44-226)||(42576146-42576330)
chr8 (48-202)||(20162624-20162779)
chr8 (48-202)||(20194717-20194872)
chr8 (44-200)||(34322706-34322863)
chr8 (42-202)||(21257770-21257932)
chr8 (44-200)||(39679456-39679613)
chr8 (65-239)||(40672638-40672820)
chr8 (141-202)||(28713960-28714021)
chr8 (141-202)||(28721307-28721368)
chr8 (141-202)||(28728949-28729010)
chr8 (194-239)||(4860072-4860117)
[»] chr1 (15 HSPs)
chr1 (54-200)||(44700055-44700201)
chr1 (44-202)||(44773530-44773688)
chr1 (43-202)||(14752525-14752684)
chr1 (44-239)||(7879989-7880184)
chr1 (44-202)||(27275952-27276110)
chr1 (44-199)||(9196055-9196210)
chr1 (44-202)||(28728917-28729075)
chr1 (44-239)||(48187571-48187766)
chr1 (44-198)||(20360557-20360711)
chr1 (44-198)||(20550259-20550413)
chr1 (44-189)||(49535905-49536050)
chr1 (44-106)||(45310889-45310951)
chr1 (43-123)||(23832919-23833004)
chr1 (138-202)||(17171385-17171449)
chr1 (137-196)||(33334691-33334749)
[»] chr4 (28 HSPs)
chr4 (44-202)||(18103690-18103847)
chr4 (43-239)||(44234633-44234829)
chr4 (44-239)||(29350943-29351138)
chr4 (43-202)||(21357814-21357975)
chr4 (44-239)||(36968410-36968606)
chr4 (44-202)||(40630881-40631040)
chr4 (65-239)||(41548376-41548558)
chr4 (44-202)||(7315355-7315513)
chr4 (44-202)||(7882472-7882631)
chr4 (44-202)||(22460021-22460179)
chr4 (70-202)||(28510404-28510537)
chr4 (44-239)||(43140890-43141098)
chr4 (44-200)||(56208281-56208437)
chr4 (48-195)||(31989519-31989661)
chr4 (44-198)||(6807837-6807992)
chr4 (44-202)||(8087791-8087949)
chr4 (43-106)||(5835906-5835969)
chr4 (44-239)||(12689563-12689754)
chr4 (44-202)||(22453086-22453250)
chr4 (44-200)||(30301531-30301687)
chr4 (141-200)||(9390318-9390377)
chr4 (149-202)||(3006238-3006291)
chr4 (137-198)||(18665545-18665605)
chr4 (44-124)||(19509636-19509715)
chr4 (48-82)||(9390209-9390243)
chr4 (48-105)||(23918557-23918613)
chr4 (44-89)||(18665637-18665682)
chr4 (194-239)||(22453039-22453084)
[»] chr7 (17 HSPs)
chr7 (44-202)||(27087913-27088072)
chr7 (44-202)||(27190229-27190388)
chr7 (44-202)||(9195571-9195729)
chr7 (44-198)||(26924904-26925059)
chr7 (48-202)||(44279229-44279384)
chr7 (44-239)||(26642442-26642645)
chr7 (43-202)||(34381456-34381616)
chr7 (44-198)||(20948319-20948473)
chr7 (44-201)||(40667195-40667353)
chr7 (44-202)||(2133752-2133910)
chr7 (44-202)||(11564500-11564658)
chr7 (48-200)||(48565912-48566064)
chr7 (72-202)||(27749729-27749859)
chr7 (44-202)||(37567811-37567969)
chr7 (44-200)||(38189643-38189798)
chr7 (44-200)||(33153964-33154115)
chr7 (166-202)||(20537043-20537079)
[»] chr3 (21 HSPs)
chr3 (44-239)||(41720045-41720241)
chr3 (44-226)||(18096079-18096264)
chr3 (44-239)||(39233036-39233238)
chr3 (44-196)||(41283823-41283976)
chr3 (44-198)||(52787716-52787872)
chr3 (44-198)||(52793935-52794091)
chr3 (44-202)||(5331642-5331800)
chr3 (43-202)||(7047755-7047914)
chr3 (44-202)||(19007683-19007842)
chr3 (44-202)||(13282318-13282476)
chr3 (44-202)||(31167588-31167746)
chr3 (148-239)||(29453462-29453553)
chr3 (44-200)||(4606651-4606807)
chr3 (44-202)||(13276041-13276199)
chr3 (44-202)||(8406035-8406193)
chr3 (137-239)||(49846522-49846623)
chr3 (137-202)||(16865395-16865459)
chr3 (137-239)||(55346706-55346816)
chr3 (44-202)||(26413003-26413161)
chr3 (75-202)||(30760778-30760905)
chr3 (44-100)||(53251670-53251731)
[»] scaffold0087 (1 HSPs)
scaffold0087 (44-202)||(8529-8687)
[»] chr5 (11 HSPs)
chr5 (44-202)||(24077433-24077591)
chr5 (43-202)||(6618345-6618505)
chr5 (43-200)||(6920550-6920709)
chr5 (44-202)||(37505143-37505301)
chr5 (65-202)||(23101715-23101852)
chr5 (44-124)||(42379241-42379321)
chr5 (75-198)||(19521029-19521154)
chr5 (45-107)||(29692063-29692125)
chr5 (137-202)||(8807197-8807262)
chr5 (44-105)||(10378117-10378178)
chr5 (148-202)||(42379351-42379405)
[»] scaffold0063 (1 HSPs)
scaffold0063 (44-173)||(1793-1923)
[»] chr6 (12 HSPs)
chr6 (44-197)||(26631298-26631452)
chr6 (44-197)||(26737273-26737427)
chr6 (44-239)||(28329895-28330087)
chr6 (44-239)||(28507531-28507723)
chr6 (44-202)||(23306330-23306488)
chr6 (44-239)||(16802187-16802380)
chr6 (44-202)||(4582075-4582241)
chr6 (45-124)||(29730513-29730591)
chr6 (44-116)||(30800411-30800483)
chr6 (43-124)||(25359635-25359715)
chr6 (42-95)||(927295-927348)
chr6 (44-77)||(14629026-14629059)
[»] scaffold0084 (1 HSPs)
scaffold0084 (44-200)||(4040-4191)
[»] scaffold0048 (3 HSPs)
scaffold0048 (44-202)||(46958-47116)
scaffold0048 (53-123)||(73652-73722)
scaffold0048 (139-200)||(73572-73634)
[»] scaffold1147 (1 HSPs)
scaffold1147 (44-202)||(454-613)
[»] scaffold0223 (1 HSPs)
scaffold0223 (44-202)||(24797-24955)
[»] scaffold0294 (1 HSPs)
scaffold0294 (137-202)||(13319-13384)
[»] scaffold0136 (1 HSPs)
scaffold0136 (44-202)||(10929-11087)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11913718 - 11913944
Alignment:
Q  1 aaaaacaaaaatgaggagaaagaccataatgaaagtgtcatattttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggaga 100  Q
    |||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  11913718 aaaaacaaaaatgatgagaaaaaccataatgaaagtgtcataatttgtttgtgagttggattttggaggggaggggaggggaatgaaaggtttatggaga 11913817  T
Q  101 ggtaaacccttttttgggagttttnnnnnnntaggtaaaggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    ||||||  ||||||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || |||||||||||    
T  11913818 ggtaaattcttttttgggagttttaaaaaaataggtaaaggttttgtggggttttgaagggttttatttgtccaattttaaagtttccttaaattggggg 11913917  T
Q  201 gtcaaacatgcaaattgacaattttgt 227  Q
    || |||||| |||||| ||||||||||    
T  11913918 gttaaacatacaaattaacaattttgt 11913944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 238
Target Start/End: Original strand, 1928676 - 1928870
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggtt 143  Q
    |||||||| | |||| |||| |||||||||||| ||| || |||||||||||||| |||||||| ||| ||||||||||||       |||  |||||||    
T  1928676 tttgtttgcgggttgagtttcggaggggaggggtgggaaaggaaaggcttatggaaaggtaaactcttgtttgggagttttaaaaaaatagagaaaggtt 1928775  T
Q  144 ttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataa 238  Q
    ||| ||| |||||||||| |||||||||||| |||||||||||||| ||||| |||||| |||||| |||||||||||||||||| |||||||||    
T  1928776 ttgagggattttgaagggcttcatttgtccaattttaaagttcccccaaattagggggttaaacatacaaattgacaattttgtcctcataataa 1928870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 37861300 - 37861457
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggtt 143  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||       |||| |||||||    
T  37861300 tttgtttgcgagttgggatttggaggggaggggaggggaaggaaagacttatggagaggtaaacccttgtttgagagtttttaaaaaatagggaaaggtt 37861399  T
Q  144 ttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||| ||| |||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  37861400 ttgggggtttttgaagggcttcatttgtccaattttaaagttcccc-aaattggggggt 37861457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 37918096 - 37917900
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||| |||||||||||  ||| |||||||        | || ||||||    
T  37918096 tttgtttgcgagttggattttggaggggaggggaagggaaggaaaggcttatggagtggtaaacccttgcttgcgagttttaaaaaaacaagggaaaggt 37917997  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    |||| |||||||||||||| |||||||||| | |||||||||||||| |||||||||||| ||||||  ||||||||||||||| | || |||||||    
T  37917996 tttggggggttttgaagggcttcatttgtctaattttaaagttcccccaaattggggggttaaacataaaaattgacaattttgccctcttaataat 37917900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 38975243 - 38975400
Alignment:
Q  43 ttttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaagg 141  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||| |||| |||||||         ||| |||||    
T  38975243 ttttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtggt-aacccttgtttgcgagttttaaaaaaacaagggaaagg 38975341  T
Q  142 ttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    ||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  38975342 ttttggggggttttgaagggcttcatttgtccaattttagagttcccctaaattggggg 38975400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 45166938 - 45167093
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||| |||||||         | | ||||||    
T  45166938 tttgtttgcgagttgggttttggaggggagaggaagggaatgaaaggcttatggagtggtaaacccttatttgcgagttttaaaaaaacaaaggaaaggt 45167037  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  45167038 tttg-ggggttttgaagggtttcatttgtccaattttaaagttcccc-aaattggggg 45167093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 20283362 - 20283520
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||| ||||||||||| |||| |||||||         ||| ||||||    
T  20283362 tttgtttgtgagttgggttttgaaggggaggggaagggaaggaaaggctta-ggagtggtaaacccttgtttgtgagttttaaaaaaacaagggaaaggt 20283460  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||| ||||| |||||||||||| |||||||||||||| ||||||||||||    
T  20283461 tttggggggttttaaagggcttcatttgtccaattttaaagttcccccaaattggggggt 20283520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 2979700 - 2979895
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||||||||||| ||||||| | ||||| ||||| |||||||||    |||||||| |||| |||||||        | || ||||||    
T  2979700 tttgtttgcgagttgggttttggaagggagggaaagggaaggaaagacttatggagtca-aaacccttgtttgcgagttttaaaaaaacaagggaaaggt 2979798  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||  |||||| ||||| |||||| |||||||||||||||| | || |||||||    
T  2979799 tttggggggttttgaagggcttcatttgtccaattttaaagttccctcaaattgaggggttaaacatacaaattgacaattttgccctcttaataat 2979895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 30728343 - 30728185
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||| ||| ||||||| |||| |||||||         ||| ||||||    
T  30728343 tttgtttgcgagttggattttggaggggaggggaagggaaggaaaggcttatggagtggt-aacccttgtttgcgagttttaaaaaaacaagggaaaggt 30728245  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||| | |||||||||||| |||||||||||||| ||||| ||||||    
T  30728244 tttggggggttttgaagagcttcatttgtccaattttaaagttcccccaaatttgggggt 30728185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 747021 - 747177
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||  ||||||||||||||||| ||||| ||||||||||||||| |||||||| || |||| | |||||        | || ||| ||    
T  747021 tttgtttgcgagttg--ttttggaggggaggggaagggaaggaaaggcttatggagtggtaaacctttgtttgcgggttttaaaaaaacaaggaaaatgt 747118  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  747119 tttg-ggggttttgaagggtttcatttgtccaattttaaagtttccctaaattggggggt 747177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 36554855 - 36555012
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta--ggtaaagg 141  Q
    |||||||| ||||||  ||||||||||||||| | || || ||||||||||||||| ||||||||||| |||| |||||||       ||   | ||||     
T  36554855 tttgtttgcgagttgaattttggaggggagggaaaggaaaggaaaggcttatggagtggtaaacccttgtttgtgagttttaaaaaaataagaggaaagt 36554954  T
Q  142 ttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    ||||| |||||||||||||| |||||||||||| |||||||||| ||| ||||||||||    
T  36554955 ttttggggggttttgaagggcttcatttgtccaattttaaagtttccc-aaattggggg 36555012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 32037051 - 32037208
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| |||||||||||||||||||||||||||| || |||||| || | ||| | ||||||||| |||| |||||||         ||| ||||||    
T  32037051 tttgtttgggagttgggttttggaggggaggggagggaaaggaaaggtttgt-gagtgctaaacccttgtttgtgagttttaaaaaaacaagggaaaggt 32037149  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattgggggg 201  Q
    |||| |||||||||||||| || ||||||||| ||||| |||||||| || ||||||||    
T  32037150 tttggggggttttgaaggggttaatttgtccaattttagagttcccccaatttgggggg 32037208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 29199016 - 29198870
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| ||||||| ||||||||||||||||| ||||| |||| |||||||||| |  || ||||| |||| |||||||         ||| ||||||    
T  29199016 tttgtttgcgagttggattttggaggggaggggaagggaaggaaatgcttatggagtgtaaaccccttgtttgcgagttttaaaaaaacaagggaaaggt 29198917  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccc 189  Q
    ||||  ||||||||||||| |||||||||||| |||||| |||||||    
T  29198916 tttggagggttttgaagggcttcatttgtccaattttaatgttcccc 29198870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 239
Target Start/End: Complemental strand, 1857919 - 1857726
Alignment:
Q  56 ttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntag-gtaaaggttttgtggggttt 154  Q
    ||||||||||||||| |   |||||||| |||||||||||| || ||||||| ||| |||| |||||||       ||  | |||| ||||| |||||||    
T  1857919 ttgggttttggagggaaaaagaggggaaggaaaggcttatgaagtggtaaactcttatttgcgagttttaaaaaaataaaggaaagtttttggggggttt 1857820  T
Q  155 tgaagggtttcatttgtccagttttaaagttcccctaaa---------ttggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    ||||| | |||||||||||| |||||||||||||| |||         ||||||||| |||||| |||||||||||||||| | ||||||||||    
T  1857819 tgaagagcttcatttgtccaattttaaagttcccccaaattcggggttttggggggttaaacatacaaattgacaattttgccctcataataat 1857726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 22336310 - 22336259
Alignment:
Q  151 gttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  22336310 gttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 22336259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 45168874 - 45168835
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaa 83  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  45168874 tttgtttgcgagttgggttttggaggggaggggaggggaa 45168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 34108924 - 34108972
Alignment:
Q  60 gttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacc 108  Q
    |||| ||||||||||  |||||||||||||| |||||||||||||||||    
T  34108924 gtttaggaggggaggaaaggggaatgaaaggtttatggagaggtaaacc 34108972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 15615626 - 15615584
Alignment:
Q  197 gggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    |||||| |||||| |||||||||||||||| ||||||||||||    
T  15615626 gggggttaaacatacaaattgacaattttgccttcataataat 15615584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 29198662 - 29198711
Alignment:
Q  152 ttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||| ||||    
T  29198662 ttttgaagggttttatttgtccaattttaaagttcccc-aaattggagggt 29198711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 25740394 - 25740442
Alignment:
Q  151 gttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    ||||| ||||| |||||||||||| |||||||||||||| ||||||||||    
T  25740394 gttttaaagggcttcatttgtccaattttaaagttcccc-aaattggggg 25740442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 32777020 - 32776826
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |||||||         ||  ||||||    
T  32777020 tttgtttgcgagttgggttttggaggggaggggaggggaaggaaaggcttatggagtggtaaacccttctttgcgagttttaaaaaaacaagagaaaggt 32776921  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||| |||||||||||| |||||| |||||||||||||||| | ||||||||||    
T  32776920 tttg-ggggttttgaagggcttcatttgttcaattttaaagttcccccaaattggggggt-aaacatacaaattgacaattttgccctcataataat 32776826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 30592212 - 30592054
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggtt 143  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||        | | |||||||    
T  30592212 tttgtttgcgagttggtttttggaggggaggggaggggaaggaaaggcttatggagaggttaacccttgtttgggagttttaaaaaaacaaggaaaggtt 30592113  T
Q  144 ttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    | | ||||||||||| || || |||||| || |||||||||||||| ||||||||||||    
T  30592112 tcggggggttttgaacggcttaatttgtacaattttaaagttcccccaaattggggggt 30592054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 26849171 - 26849377
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| |||  |||||||        | || ||||||    
T  26849171 tttgtttgcgagttgggttttggaggggaagggaggggaaggaaaggcttatggagtggtaaacccttgtttccgagttttaaaaaaagaagggaaaggt 26849270  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattgg----------ggggtcaaacatgcaaattgacaattttgtcttca 232  Q
    |||| |||||||||||||| |||||||||||| |||||||||| ||| |||||||          ||||| |||||| |||||||||||||||| | |||    
T  26849271 tttggggggttttgaagggcttcatttgtccaattttaaagtttccccaaattggagggttttggggggttaaacatacaaattgacaattttgccctca 26849370  T
Q  233 taataat 239  Q
    |||||||    
T  26849371 taataat 26849377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 37807104 - 37806945
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||| || |||| |||||||         ||| ||||||    
T  37807104 tttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatagagtggtaaacctttgtttgtgagttttaaaaaaacaagggaaaggt 37807005  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||| | ||||||||||||    
T  37807004 tttggggggttttgaagggcttcatttgtccaattttaaagttcctccaaattggggggt 37806945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 43204238 - 43204397
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||| || || ||||||||||||||| |||||| |||| |||| |||||||         ||| ||||||    
T  43204238 tttgtttgcgagttgggttttggaggggaggggaaggaaaggaaaggcttatggagtggtaaatccttgtttgcgagttttaaaaaaacaagggaaaggt 43204337  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| ||||||||||||||||||||||||||| |||||||||||| | |||||| |||||    
T  43204338 tttggggggttttgaagggtttcatttgtccaattttaaagttcctccaaattgaggggt 43204397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 39154188 - 39154342
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggtt 143  Q
    |||||||| |||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||| || ||||||||||||        | | |||||||    
T  39154188 tttgtttgggagttgggttttggagaggaggggaggggaagaaaatgcttatggagaggtaaaccattgtttgggagttttaaaaaaacatggaaaggtt 39154287  T
Q  144 ttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggg 198  Q
    ||| |||||||| ||||  |||||||||||| |||||||||||||| ||||||||    
T  39154288 ttggggggttttaaaggacttcatttgtccaattttaaagttcccccaaattggg 39154342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 4860275 - 4860119
Alignment:
Q  48 tttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaaccctt-ttttgggagtttt-nnnnnnntaggtaaaggtttt 145  Q
    ||||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||||||||| | ||| |||||||         ||| |||||||||    
T  4860275 tttgtgagttgggttttggaggggaggagaagggaaggaaaggcttatggagtggtaaacccttgtgttgcgagttttaaaaaaacaaggaaaaggtttt 4860176  T
Q  146 gtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    | |||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||    
T  4860175 ggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattcgggggt 4860119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 226
Target Start/End: Original strand, 42576146 - 42576330
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggagggg-aatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaagg 141  Q
    |||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||  |||||||||||||||| |||| ||        | || |||      
T  42576146 tttgtttgcgagttgggttttggagggagggggagggggaatgaaaggtttatggaatggtaaacccttttttgcgagtcttaaaaaaacaaggaaaaaa 42576245  T
Q  142 ttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttg 226  Q
    ||||| |||||| | |||||||||||||||| | |||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  42576246 ttttggggggttctaaagggtttcatttgtctaattttaaagttccccaaaattggggggttaaacatacaaattgacaattttg 42576330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 20162779 - 20162624
Alignment:
Q  48 tttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntag-gtaaaggttttg 146  Q
    |||| ||||||||||||| |||| | |||||||||| ||||||||||||||| ||||||||||| |||| |||||||        |  | ||||||||||    
T  20162779 tttgcgagttgggttttgaagggaaagggaggggaaggaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaaacaaaggaaaggttttg 20162680  T
Q  147 tggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
     ||| |||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  20162679 ggggattttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 20162624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 20194717 - 20194872
Alignment:
Q  48 tttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntag-gtaaaggttttg 146  Q
    |||| ||||||||||||| |||| | |||||||||| ||||||||||||||| ||||||||||| |||| |||||||        |  | ||||||||||    
T  20194717 tttgcgagttgggttttgaagggaaagggaggggaaggaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaaacaaaggaaaggttttg 20194816  T
Q  147 tggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
     ||| |||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  20194817 ggggattttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 20194872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 34322706 - 34322863
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||| | ||| |||||||||||||||  |||||||||| |||| |||||||         ||| ||||||    
T  34322706 tttgtttgcgagttgggttttggaggggaggggaagagaaggaaaggcttatggag-tgtaaacccttgtttgtgagttttaaaagaacaagggaaaggt 34322804  T
Q  143 ttt-gtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    ||| | |||||||||||||| |||||||||||| |||||||||||||||| ||||||||    
T  34322805 tttgggggggttttgaagggcttcatttgtccaattttaaagttcccctatattggggg 34322863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 21257770 - 21257932
Alignment:
Q  42 attttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt--nnnnnnntaggtaaa 139  Q
    |||||||||| |||||||||||||||||||| ||||||||||  |||||||||||||| ||||||||||| |||| |||||||          |   | |    
T  21257770 attttgtttgcgagttgggttttggaggggaagggaggggaagaaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaaaacaaatgata 21257869  T
Q  140 ggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    | ||||| | ||||||||||||||||||||||||| |||||||||||||| || |||||||||    
T  21257870 gattttgggaggttttgaagggtttcatttgtccaattttaaagttcccccaacttggggggt 21257932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 39679456 - 39679613
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||||||||| |||| ||| || ||||| ||| ||||||||||| ||||||| ||| |||| |||||||       || || ||||||    
T  39679456 tttgtttgcgagttgggttttgaaggg-aggagaagggaaggaatggcttatggagtggtaaactcttgtttgcgagttttaaaaaaataagggaaaggt 39679554  T
Q  143 tttgtgggg-ttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    |||| |||| |||||||||| |||||||||||| ||||||||||| || ||||||||||    
T  39679555 tttgggggggttttgaagggcttcatttgtccaattttaaagttctcccaaattggggg 39679613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 239
Target Start/End: Original strand, 40672638 - 40672820
Alignment:
Q  65 ggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggttttgtggggttttgaagggtt 163  Q
    ||||||||||| ||||||| ||||||||| ||||| || |||| ||| |||| |||||||        | || ||||||||||  ||||||||||| |||    
T  40672638 ggaggggagggaaggggaaggaaaggcttgtggagtggaaaactcttgtttgagagttttaaaaaaacaagggaaaggttttggagggttttgaagcgtt 40672737  T
Q  164 tcatttgtccagttttaaagttcccctaaa-------ttggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    ||||||||||| ||||||||||| || |||       ||  ||||| |||||| |||||||||||||||| | ||||||||||    
T  40672738 tcatttgtccaattttaaagttctccaaaatcaaaggttttggggttaaacatacaaattgacaattttgccctcataataat 40672820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 28713960 - 28714021
Alignment:
Q  141 gttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||||| |||||||||||||  |||||||||||| |||||||||||||| |||||| |||||    
T  28713960 gttttggggggttttgaaggacttcatttgtccaattttaaagttcccccaaattgaggggt 28714021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 28721307 - 28721368
Alignment:
Q  141 gttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||||| |||||||||||||  |||||||||||| |||||||||||||| |||||| |||||    
T  28721307 gttttggggggttttgaaggacttcatttgtccaattttaaagttcccccaaattgaggggt 28721368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 28728949 - 28729010
Alignment:
Q  141 gttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||||| |||||||||||||  |||||||||||| |||||||||||||| |||||| |||||    
T  28728949 gttttggggggttttgaaggacttcatttgtccaattttaaagttcccccaaattgaggggt 28729010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 4860117 - 4860072
Alignment:
Q  194 ttggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    ||||||||| |||||| |||||||||||||||||| || |||||||    
T  4860117 ttggggggttaaacatacaaattgacaattttgtcctcttaataat 4860072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 44700201 - 44700055
Alignment:
Q  54 agttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggttttgtggggtt 153  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||       |||| |||||||||| ||||||    
T  44700201 agttgggttttggaggggaggggaagggaaggaaaggcttatggagaggtaaactcttgtttgggagttttaaaaaaatagggaaaggttttggggggtt 44700102  T
Q  154 ttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    |||||||| |||||||||||| |||||||||||||| ||||||||||    
T  44700101 ttgaagggcttcatttgtccaattttaaagttcccccaaattggggg 44700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 44773530 - 44773688
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggtt 143  Q
    |||||||| ||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||        | | |||||||    
T  44773530 tttgtttgcgagttgggttttggaagggaggggaggggaaggaaatgcttatggagaggtaaacccttgtttgggagttttaaaaaaacacggaaaggtt 44773629  T
Q  144 ttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||| |||||||||||||| |||||| ||||| |||||||||||||| ||||||||||||    
T  44773630 ttggggggttttgaagggcttcattcgtccaattttaaagttcccccaaattggggggt 44773688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 14752525 - 14752684
Alignment:
Q  43 ttttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaagg 141  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||| || | |||||||        | || ||| |    
T  14752525 ttttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtg-taaacccttgttcgtgagttttaaaaaaacaagggaaaag 14752623  T
Q  142 ttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  14752624 ttttggggggttttgaagggtttcatttgtccaattttaaagttcccccaaattggggggt 14752684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 7880184 - 7879989
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||| ||||| |||| |||||||        | || ||||||    
T  7880184 tttgtttgcgagttggattttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcgagttttgataaaacaagggaaaggt 7880086  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    |||| |||||||| || || ||||||||| || |||||||||||||| ||||||| | || |||||| |||||||||||||||| | || |||||||    
T  7880085 tttggggggttttaaatggattcatttgttcaattttaaagttcccccaaattggagagttaaacatacaaattgacaattttgccctcttaataat 7879989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 27276110 - 27275952
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||| ||||||| |||| |||||||         ||| |||| |    
T  27276110 tttgtttgtgagttggattttggaggggaggggaagggaaggaaaggcttatggagtggt-aacccttgtttgcgagttttgataaaacaagggaaagat 27276012  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||| ||||||||||||    
T  27276011 tttggggggttttgaagggcttcatttgttcaattttaaagttcccccaaattggggggt 27275952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 9196055 - 9196210
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| |||||||||||||||||||||||||  |||| |||| ||||||||||    |||||||| |||| |||||||        | || ||||||    
T  9196055 tttgtttgcgagttgggttttggaggggaggggaatggaaggaaatgcttatggagtca-aaacccttgtttgcgagttttaaaaaaacaagggaaaggt 9196153  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattgggg 199  Q
    |||  |||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  9196154 ttttgggggttttgaagggcttcatttgtccaattttaaagttcccctaaattgggg 9196210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 28729075 - 28728917
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||| ||||||||||||||||| | ||||| |||||||||||| || | ||||||||| |||| |||||||        | || ||||||    
T  28729075 tttgtttgcgagttaggttttggaggggagggtaagggaaggaaaggcttatgaagtg-taaacccttgtttgcgagttttaaaaaaacaagggaaaggt 28728977  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||  ||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||    
T  28728976 tttggagggttttgaagggcttcatttgtccaattttaaggttcccccaaattggggggt 28728917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 48187571 - 48187766
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| |||||| |||||||||||||||||||||||| |||||||||||| ||  |||||||||| |||| |||||||         ||| ||| ||    
T  48187571 tttgtttgcgagttgtgttttggaggggaggggaggggaaggaaaggcttatgaag-tgtaaacccttatttgcgagttttaaaaaaccaagggaaatgt 48187669  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaatt-ggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    |||| ||||||||||| || ||||||||| || ||||||  |||||| ||||| ||||||| |||||| |||||| ||||||||| | || |||||||    
T  48187670 tttg-ggggttttgaatggcttcatttgttcaattttaagattcccccaaattgggggggttaaacatacaaattaacaattttgccctcttaataat 48187766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 20360557 - 20360711
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||| ||||| |||||||||||  |||| ||||||||||| ||| ||||| ||||| |||| |||||||        | || ||| ||    
T  20360557 tttgtttgcgagttggattttgtaggggaggggaacggaaggaaaggcttattgagtggtaa-cccttgtttgcgagtttttaaaaaagaagggaaaagt 20360655  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggg 198  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  20360656 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggg 20360711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 20550413 - 20550259
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||| ||||| |||||||||||  |||| ||||||||||| ||| ||||| ||||| |||| |||||||        | || ||| ||    
T  20550413 tttgtttgcgagttggattttgtaggggaggggaacggaaggaaaggcttattgagtggtaa-cccttgtttgcgagtttttaaaaaagaagggaaaagt 20550315  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggg 198  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  20550314 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggg 20550259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 49536050 - 49535905
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||||||||||| |||||||||| |  ||||||||| ||||||| ||||||| |||||| | || |||| |||||||        | || ||||||    
T  49536050 tttgtttgtgagttggattttggagggcaatggaggggaaggaaaggcatatggagtggtaaatc-ttgtttgcgagttttaacaaaacaagggaaaggt 49535952  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccc 189  Q
    |||| |||||||||||||  |||||||||||| ||||||||||||||    
T  49535951 tttggggggttttgaaggacttcatttgtccaattttaaagttcccc 49535905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 45310889 - 45310951
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaa 106  Q
    |||||||| ||||||| |||||||||||| ||||  |||||||||||||||||||| ||||||    
T  45310889 tttgtttgcgagttggattttggaggggatgggaatggaatgaaaggcttatggagtggtaaa 45310951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 23833004 - 23832919
Alignment:
Q  43 ttttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggctt-----atggagaggtaaacccttttttgggagttt 123  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||| |||     ||||||| ||||||| || |||||||||||    
T  23833004 ttttgtttgcgagttgggttttggaggggaggggatgggaaggaaagactttaaaaatggagatgtaaacctttgtttgggagttt 23832919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 17171449 - 17171385
Alignment:
Q  138 aaggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||||||| |||||||||||||| |||||||||||| |||||||||| ||| ||| | ||||||    
T  17171449 aaggttttgcggggttttgaagggcttcatttgtccaattttaaagtttccccaaagtagggggt 17171385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 33334691 - 33334749
Alignment:
Q  137 aaaggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattg 196  Q
    |||||||||| ||||||||||| || |||||||||||| |||||||||| ||| ||||||    
T  33334691 aaaggttttg-ggggttttgaaaggcttcatttgtccaattttaaagtttccccaaattg 33334749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 18103690 - 18103847
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggtt 143  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||       |||| |||||||    
T  18103690 tttgtttgcgagttgggatttggaggggaggggaggggaaggaaagacttatggagaggtaaacccttgtttgagagtttttaaaaaatagggaaaggtt 18103789  T
Q  144 ttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||| ||| |||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  18103790 ttgggggtttttgaagggcttcatttgtccaattttaaagttcccc-aaattggggggt 18103847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 44234829 - 44234633
Alignment:
Q  43 ttttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaagg 141  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||| || |||| |||||||        | || |||||    
T  44234829 ttttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtggtaaacctttgtttgcgagttttaaaaaaacaagggaaagg 44234730  T
Q  142 ttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    ||| | |||||||||||||| |||||||||||| |||||||||||||| ||||| |||||| |||||| |||||||||||||||| | || |||||||    
T  44234729 tttaggggggttttgaagggcttcatttgtccaattttaaagttcccccaaatt-gggggttaaacatacaaattgacaattttgccctcttaataat 44234633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 29350943 - 29351138
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||| |||| |||||||        | || ||||||    
T  29350943 tttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtg-taaacccttgtttgtgagttttaaaaaaacaagggaaaggt 29351041  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    |||| |||||||||||||  |||||||||||| ||| |||||||||| ||||| |||||| |||||| |||||||||||||||| | || |||||||    
T  29351042 tttggggggttttgaaggacttcatttgtccaatttgaaagttcccccaaattagggggttaaacatacaaattgacaattttgccctcttaataat 29351138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 21357975 - 21357814
Alignment:
Q  43 ttttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt--nnnnnnntaggtaaag 140  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||          ||| ||||    
T  21357975 ttttgtttgcgagttgggttttggaggggagcggaggggaaggaaaggcttatggagaggtaaacccttgtttgggagttttaaaaaaaacaagggaaag 21357876  T
Q  141 gttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||||| ||||||| |||||| ||  |||||||| |||||||||||||| ||||||||||||    
T  21357875 gttttggggggtttagaagggcttattttgtccaattttaaagttcccccaaattggggggt 21357814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 36968410 - 36968606
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||  |||||||| || |||| |||||||        | || ||||||    
T  36968410 tttgtttgggagttgggttttggaggggaggggaagggaaggaaaggcttattgaatggtaaaccattgtttgcgagttttaaaaaaacatgggaaaggt 36968509  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    |||  |||| ||||||||| ||| |||||||| |||||||||| ||| |||||||||||| |||||| |||||||||||||||||| || |||||||    
T  36968510 ttttgggggctttgaagggcttcgtttgtccaattttaaagtttccccaaattggggggttaaacatacaaattgacaattttgtcctcttaataat 36968606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 40630881 - 40631040
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnt--aggtaaagg 141  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||| ||||  ||||||          ||| |||||    
T  40630881 tttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtg-taaacccttgtttgtaagttttaaaaaaaacaagggaaagg 40630979  T
Q  142 ttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  40630980 ttttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 40631040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 239
Target Start/End: Original strand, 41548376 - 41548558
Alignment:
Q  65 ggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggttttgtggggttttgaagggttt 164  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||||||        ||| ||| |||||| |||||||||||||  ||    
T  41548376 ggaggggaggggaggggagggaaaggcttgtggagaggtaaacccttgtttgggagttttaaaaaaacagggaaaagttttggggggttttgaaggactt 41548475  T
Q  165 catttgtccagttttaaagttcccctaaattg--------gggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    |||||||||| |||| ||||||||| ||||||        |||||| |||||| |||||||||||||||||| ||||||||||    
T  41548476 catttgtccaatttttaagttcccccaaattgggggttttgggggttaaacatacaaattgacaattttgtcctcataataat 41548558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 7315513 - 7315355
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||| | ||| |||| ||||||||||| |||| |||||||        | || ||||||    
T  7315513 tttgtttgcgagttgggttttggaggggaggggaagggaaggaaacgttta-ggagtggtaaacccttgtttgtgagttttaaaaaaacaagggaaaggt 7315415  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  7315414 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 7315355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 7882631 - 7882472
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||| ||| |||| |||||||         | | ||||||    
T  7882631 tttgtttgcgagttggattttggaggggaggggaagggaaggaaaggcttatggagtggtaaactcttgtttgtgagttttaaaaaaacaaaggaaaggt 7882532  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||  ||||||||||||    
T  7882531 tttggggggttttgaagggcttcatttgtccaattttaaagttccctcaaattggggggt 7882472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 22460179 - 22460021
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||| ||||||||||||||||| ||||| ||||| ||||||||| ||||| ||||| |||| |||||||        | || ||||||    
T  22460179 tttgtttgagagttggattttggaggggaggggaagggaaggaaagacttatggagtggtaa-cccttgtttgcgagttttaaaaaaacaagggaaaggt 22460081  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  22460080 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 22460021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 202
Target Start/End: Original strand, 28510404 - 28510537
Alignment:
Q  70 ggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggttttgtggggttttgaagggtttcatt 168  Q
    |||||||||||||| ||||||||||||||| ||||||||||| |||| |||||||        | || ||| |||||| |||||||||||||| ||||||    
T  28510404 ggaggggaggggaaggaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaatcaagggaaatgttttggggggttttgaagggcttcatt 28510503  T
Q  169 tgtccagttttaaagttcccctaaattggggggt 202  Q
    |||||| |||||||||||||| ||||||||||||    
T  28510504 tgtccaattttaaagttcccccaaattggggggt 28510537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 43141098 - 43140890
Alignment:
Q  44 tttgtttgtgagttgggttttggag-----gggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaa 138  Q
    |||||||||||||||||||||||||     |||| |||| ||||| ||||| |||||| ||||||||| |||| ||||||||||||       |||| ||    
T  43141098 tttgtttgtgagttgggttttggagtggtggggaagggaagggaaggaaagacttatgaagaggtaaatccttatttgggagttttaaaaaaatagggaa 43140999  T
Q  139 aggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaa---------ttggggggtcaaacatgcaaattgacaattttgtct 229  Q
    | |||||| ||||||||||| || |||||||||||| ||||||||||| || |||         ||||||| | |||||| |||||||||||||||||||    
T  43140998 aagttttg-ggggttttgaaaggcttcatttgtccaattttaaagttctcccaaattgagggttttgggggattaaacatacaaattgacaattttgtct 43140900  T
Q  230 tcataataat 239  Q
    ||||||||||    
T  43140899 tcataataat 43140890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 56208437 - 56208281
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||| ||||| |||||| |||| |||||||||||| |||||||| ||||| ||||| |||| |||||||        | || ||||||    
T  56208437 tttgtttgcgagttggattttgaaggggaagggaagggaatgaaaggtttatggagtggtaa-cccttgtttgcgagttttaaaaatacaagggaaaggt 56208339  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    |||| |||||||||||||| |||||||||||| |||||||||||| | ||||||||||    
T  56208338 tttggggggttttgaagggcttcatttgtccaattttaaagttcctccaaattggggg 56208281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 195
Target Start/End: Original strand, 31989519 - 31989661
Alignment:
Q  48 tttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggttttgt 147  Q
    |||||||||||| |||||||||||| |||| ||||||||||| ||||||||| ||||| ||||| |||| |||||||        |   ||| ||||||     
T  31989519 tttgtgagttggattttggaggggaagggaagggaatgaaagacttatggagtggtaa-cccttgtttgcgagttttaaaa----aaacaaatgttttgg 31989613  T
Q  148 ggggttttgaagggtttcatttgtccagttttaaagttcccctaaatt 195  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||    
T  31989614 ggggttttgaagggtttcatttgtccaattttaaagttcccccaaatt 31989661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 6807837 - 6807992
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||  ||||||||||||||||| ||||| ||||| ||||||||| ||||||| ||| |||| || ||||        | || ||||||    
T  6807837 tttgtttgcgagttgaattttggaggggaggggaagggaaggaaagacttatggagtggtaaactcttgtttgcgaattttaaaaaaacaagggaaaggt 6807936  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggg 198  Q
    ||| ||| ||||||||| | |||||||||||| |||||||||||||| ||||||||    
T  6807937 tttatggtgttttgaagtgcttcatttgtccaattttaaagttcccccaaattggg 6807992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 8087949 - 8087791
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntag-gtaaaggt 142  Q
    |||||||| ||||||  ||||||||||||||||| || || ||||||||||||||| ||||| ||||| ||||  ||||||        |  | ||||||    
T  8087949 tttgtttgggagttgaattttggaggggaggggaaggaaaggaaaggcttatggagtggtaa-cccttgtttgtaagttttaaaaaaacaaaggaaaggt 8087851  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| || ||||||||| |||||||||||||| ||||||||||||    
T  8087850 tttggggggttttgaagggcttaatttgtccaattttaaagttcccccaaattggggggt 8087791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 5835906 - 5835969
Alignment:
Q  43 ttttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaa 106  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  5835906 ttttgcttgcgagttgggttttggaggggaggggtggggaatgaaaggtttatggagaggtaaa 5835969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 12689754 - 12689563
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| |||||||||||||||||||| |||| || ||||      |||| ||| ||||||||||| |||| |||||||        | || |||| |    
T  12689754 tttgtttgcgagttgggttttggaggggaagggaaggaaatgt-----ttattgagtggtaaacccttgtttgcgagttttaaaaaaacaagggaaagat 12689660  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    ||||  |||||||||| || |||||||||||| |||||||||||||| |||||| ||||| |||||| ||||||||| |||||| | || |||||||    
T  12689659 tttggagggttttgaaaggcttcatttgtccaattttaaagttcccccaaattgaggggttaaacatacaaattgacgattttgccctcttaataat 12689563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 22453250 - 22453086
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatg-----aaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggta 137  Q
    ||||||||||||||||||||||||||| |||| | ||||| |     ||||| |||||||| |||||| |||| |||| |||||||        | ||      
T  22453250 tttgtttgtgagttgggttttggagggaagggaaagggaagggaagaaaaggtttatggagtggtaaatccttgtttgcgagttttaaaaaaacaagggg 22453151  T
Q  138 aaggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||    
T  22453150 aaggttttggggggttttgaagggtttcatttgtctagttttaaagtttccccaaattggagggt 22453086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 30301687 - 30301531
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| |||||||||||||||||||||||||||| || ||||||||| | ||| | ||||||||| |||| |||||||         | | ||||||    
T  30301687 tttgtttgggagttgggttttggaggggaggggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttaaaaaaacaaaggaaaggt 30301589  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    |||| |||||||||| ||| || ||||||||| ||||| |||||||| || |||||||    
T  30301588 tttggggggttttgatggggttaatttgtccaattttagagttcccccaatttggggg 30301531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 9390318 - 9390377
Alignment:
Q  141 gttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    |||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  9390318 gttttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggg 9390377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 3006291 - 3006238
Alignment:
Q  149 gggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  3006291 gggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 3006238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 18665605 - 18665545
Alignment:
Q  137 aaaggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggg 198  Q
    |||||||||| |||||||| ||||| |||||||||||| |||||||||||||| ||||||||    
T  18665605 aaaggttttg-ggggtttttaagggcttcatttgtccaattttaaagttcccccaaattggg 18665545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 19509636 - 19509715
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt 124  Q
    |||||||| ||||||| |||||| |||||||||| || || |||||||||||||||  |||||||||| |||| |||||||    
T  19509636 tttgtttgcgagttggattttggtggggaggggaaggaaaggaaaggcttatggag-tgtaaacccttgtttgcgagtttt 19509715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 9390209 - 9390243
Alignment:
Q  48 tttgtgagttgggttttggaggggaggggagggga 82  Q
    |||||||||||||||||||||||||||||||||||    
T  9390209 tttgtgagttgggttttggaggggaggggagggga 9390243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 23918557 - 23918613
Alignment:
Q  48 tttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaa 105  Q
    ||||||||||||||||||||||| | | | ||||||| ||||||||||||||||||||    
T  23918557 tttgtgagttgggttttggagggaaagcg-ggggaatcaaaggcttatggagaggtaa 23918613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 18665682 - 18665637
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaag 89  Q
    |||||||| ||||||||||||||||||||  ||||||||| |||||    
T  18665682 tttgtttgcgagttgggttttggaggggaatggaggggaaggaaag 18665637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 22453084 - 22453039
Alignment:
Q  194 ttggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    ||||||||| |||||| |||||||||||||||||| || |||||||    
T  22453084 ttggggggttaaacatacaaattgacaattttgtcctcttaataat 22453039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 27088072 - 27087913
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| |||||||||||||||||||||| || ||||| |||| |||||||||| ||||||||||| |||| |||||||       || || ||||||    
T  27088072 tttgtttgcgagttgggttttggaggggaggagaagggaaggaaaagcttatggagtggtaaacccttgtttgcgagttttaaaaaaataagggaaaggt 27087973  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  27087972 tttggggggttttgaagggcttcatttgtccaattttaaagttccccaaaattggggggt 27087913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 27190229 - 27190388
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| |||||||||||||||||||||| || ||||| |||| |||||||||| ||||||||||| |||| |||||||       || || ||||||    
T  27190229 tttgtttgcgagttgggttttggaggggaggagaagggaaggaaaagcttatggagtggtaaacccttgtttgcgagttttaaaaaaataagggaaaggt 27190328  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  27190329 tttggggggttttgaagggcttcatttgtccaattttaaagttccccaaaattggggggt 27190388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 9195729 - 9195571
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||  |||||||||| |||| |||||||         ||| ||||||    
T  9195729 tttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggag-tgtaaacccttgtttgtgagttttaaaaaaacaagggaaaggt 9195631  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||    
T  9195630 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattagggggt 9195571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 26925059 - 26924904
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    ||||||||  |||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||| ||||  ||||||         ||| ||||||    
T  26925059 tttgtttgcaagttggattttggaggggaggggaagggaatgaaaggcttatgaagtggtaaacccttgtttgccagttttaaaaaaacaagggaaaggt 26924960  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggg 198  Q
    |||| |||||||||||||| |||||||||| | |||||||||||||| ||||||||    
T  26924959 tttggggggttttgaagggcttcatttgtcaaattttaaagttcccccaaattggg 26924904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 44279229 - 44279384
Alignment:
Q  48 tttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntag-gtaaaggttttg 146  Q
    |||| ||||||||||||| |||| | |||||||||| ||||||||||||||| ||||||||||| |||| |||||||        |  | ||||||||||    
T  44279229 tttgcgagttgggttttgaagggaaagggaggggaaggaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaaacaaaggaaaggttttg 44279328  T
Q  147 tggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
     ||| |||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  44279329 ggggattttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 44279384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 26642442 - 26642645
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggtt 143  Q
    |||||||| |||||| ||||| ||| |||| ||| | ||| |||||| ||||||||||||||| |||| |||| |||||||       |||| ||| ||     
T  26642442 tttgtttgcgagttgagttttagagtggagtggaagagaaagaaaggtttatggagaggtaaatccttgtttgagagttttaaaaaaatagggaaaagtg 26642541  T
Q  144 ttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattg---------gggggtcaaacatgcaaattgacaattttgtcttcata 234  Q
    ||| |||||||||||||| |||||||||||| |||||||||||||| ||||||         |||||| |||||| |||||||||||||||||| |||||    
T  26642542 ttg-ggggttttgaagggcttcatttgtccaattttaaagttcccccaaattgagaggttttgggggttaaacatacaaattgacaattttgtcctcata 26642640  T
Q  235 ataat 239  Q
    |||||    
T  26642641 ataat 26642645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 34381616 - 34381456
Alignment:
Q  43 ttttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaagg 141  Q
    ||||||||| ||||||| ||||||||| ||||||| ||||| |||||| |||||||| |||||| | || |||| |||||||        | || |||||    
T  34381616 ttttgtttgcgagttggattttggaggagaggggaagggaaggaaaggtttatggagtggtaaatctttgtttgcgagttttaaaaaaacaagggaaagg 34381517  T
Q  142 ttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||| ||||    
T  34381516 ttttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggagggt 34381456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 20948319 - 20948473
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| |||||| ||||||||||||| |||| ||||| ||||||||||||||| |||||| |||| |||| |||||||         ||| ||||||    
T  20948319 tttgtttgcgagttgagttttggaggggaagggaagggaaggaaaggcttatggagtggtaaatccttgtttgcgagttttaaaaaaacaagggaaaggt 20948418  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggg 198  Q
    |||| |||||||||||||| |||||||||||| ||||||| |||||| ||||||||    
T  20948419 tttg-ggggttttgaagggcttcatttgtccaattttaaaattcccccaaattggg 20948473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 40667353 - 40667195
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||| |||||||||||| |||| | ||| ||||| ||||||||| ||||||||||| |||| |||||||        | || ||||||    
T  40667353 tttgtttgcgagttggattttggaggggaagggaagagaaggaaagacttatggagtggtaaacccttgtttgcgagttttaacaaaacaagggaaaggt 40667254  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattgggggg 201  Q
    |||| | |||||||||||| |||||||||| | |||||||||||||| |||||||||||    
T  40667253 tttgggaggttttgaagggcttcatttgtcaaattttaaagttcccccaaattgggggg 40667195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 2133910 - 2133752
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||  ||||| ||||||||||| ||||| ||||||||||||||| ||||| ||||| ||||  ||||||        | || ||||||    
T  2133910 tttgtttgggagttgaattttgaaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcaagttttaaaaaaacaagggaaaggt 2133812  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||    
T  2133811 tttggggggttttgaagggtttaatttgtccaattttaaagttcccccaaattggagggt 2133752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 11564658 - 11564500
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||||||||||| |||||||||  |||| |||||||| |||||| ||||||| ||| ||||  ||||||        | || |||| |    
T  11564658 tttgtttgcgagttgggttttggaagggaggggaacggaaggaaaggct-atggagtggtaaactcttgtttgcaagttttaaaaaaacaagggaaagat 11564560  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  11564559 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 11564500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 48565912 - 48566064
Alignment:
Q  48 tttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnt-aggtaaaggttttg 146  Q
    |||||||||||| ||||||||||||||||| || ||  ||||||||||||||  |||||||||| |||| |||||||       | ||| ||| ||||||    
T  48565912 tttgtgagttggattttggaggggaggggaaggtaagaaaaggcttatggag-tgtaaacccttgtttgtgagttttaaaaaaataagggaaaagttttg 48566010  T
Q  147 tggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
     |||||||||||||| |||||||||||| |||||||||| | | ||||||||||    
T  48566011 gggggttttgaagggcttcatttgtccaattttaaagtttctccaaattggggg 48566064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 27749859 - 27749729
Alignment:
Q  72 aggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggttttgtggggttttgaagggtttcatttg 170  Q
    |||||| ||||| ||||||||||||||| | ||||||||| |||| |||||||        | || ||| |||||| ||||||||||||||||||||||     
T  27749859 aggggaagggaaggaaaggcttatggagtg-taaacccttgtttgcgagttttaaaaaaacaagggaaaagttttggggggttttgaagggtttcattta 27749761  T
Q  171 tccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||||||||||||||||    
T  27749760 tccaattttaaagttcccctaaattggggggt 27749729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 37567811 - 37567969
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| |||||||||||||||||||||||||||| || |||||| || || || | ||||||||| |||| |||||||        | || ||||||    
T  37567811 tttgtttgggagttgggttttggaggggaggggagggaaaggaaaggtttgtg-agtgctaaacccttgtttgtgagttttaaaaaaacaagggaaaggt 37567909  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| || ||||||||| ||||| |||||||| || |||||||||    
T  37567910 tttggggggttttgaaggggttaatttgtccaattttagagttcccccaatttggggggt 37567969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 38189643 - 38189798
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| | ||||| |||||||||||||||||||  || |||| |||||||||||||||||||||| ||||  ||||||         | | ||||||    
T  38189643 tttgtttgcgtgttggattttggaggggaggggaggataaggaaatgcttatggagaggtaaacccttgtttgcaagttttaaacaaacaaaggaaaggt 38189742  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    |||| |||| ||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  38189743 tttg-gggggtttgaagggcttcatttgtccaattttaaagttcccc-aaattggggg 38189798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 33153964 - 33154115
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggt-aaaggt 142  Q
    ||||||||||||||||||||||||||| | ||||     | ||||||||||||||| |||||||| || |||| || ||||        | |  |||| |    
T  33153964 tttgtttgtgagttgggttttggagggaaaggga-----aagaaaggcttatggagtggtaaaccattgtttgtgaattttaaaaaaacaagagaaagat 33154058  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    |||| ||| ||||||||||||||||||||| | |||||||||||||| ||||||||||    
T  33154059 tttgggggattttgaagggtttcatttgtctaattttaaagttcccc-aaattggggg 33154115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 20537043 - 20537079
Alignment:
Q  166 atttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  20537043 atttgtccaattttaaagttcccccaaattggggggt 20537079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 41720241 - 41720045
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||  ||||||||||||||||||||||| | ||||| ||||||||||| ||| ||||||| ||| |||| |||||||        | || |||| |    
T  41720241 tttgttttcgagttgggttttggaggggagggtaagggaaggaaaggcttatagagtggtaaactcttgtttgtgagttttaaaaaaacaagggaaagat 41720142  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    |||| |||||||||||||| |||||||||| | |||||||||||||| |||||||||||| |||||| |||||||||||||||| | || |||||||    
T  41720141 tttggggggttttgaagggcttcatttgtctaattttaaagttcccccaaattggggggttaaacatacaaattgacaattttgccctcttaataat 41720045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 226
Target Start/End: Original strand, 18096079 - 18096264
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta---ggtaaag 140  Q
    |||||||| |||||||||||||||||||  |||||||||| |||||| ||||||||||||||||| || |||| ||||||         |   || ||||    
T  18096079 tttgtttgcgagttgggttttggagggggagggaggggaaggaaaggtttatggagaggtaaacctttgtttgcgagtttaaaaaaaaaacaagggaaag 18096178  T
Q  141 gttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttg 226  Q
    | |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||| |||| |||||| ||||||||||||||||    
T  18096179 gatttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggagggttaaacatacaaattgacaattttg 18096264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 39233238 - 39233036
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggtt 143  Q
    |||||||| ||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||| |||| |||||||        ||| |||||||    
T  39233238 tttgtttgcgagttggattttggaggggaggggaaggggaggaaaggcttatggagaggtaaacccttgtttgagagttttaaaaaaccagggaaaggtt 39233139  T
Q  144 ttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggg--------gggtcaaacatgcaaattgacaattttgtcttcataa 235  Q
    ||| |||||||||||||| |||||||||| | |||||||||||||| ||||| ||        |||| |||||| ||||||||||||||| || ||||||    
T  39233138 ttg-ggggttttgaagggcttcatttgtcaaattttaaagttcccccaaattagggtttttgagggttaaacatacaaattgacaattttatcctcataa 39233040  T
Q  236 taat 239  Q
    ||||    
T  39233039 taat 39233036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 41283823 - 41283976
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnt-aggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||  ||||||||||| | || |||||||       | ||| ||||||    
T  41283823 tttgtttgcgagttgggttttggaggggaggggaggggaaggaaagacttatggaatggtaaacccttgtctgcgagttttaaaaaaataagggaaaggt 41283922  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattg 196  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||    
T  41283923 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattg 41283976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 52787872 - 52787716
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt--nnnnnnntaggtaaagg 141  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||| |||||||          ||| ||| |    
T  52787872 tttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtggtaaacccttgtttgtgagttttaaaaaaaccaagggaaatg 52787773  T
Q  142 ttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggg 198  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  52787772 ttttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggg 52787716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 52794091 - 52793935
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt--nnnnnnntaggtaaagg 141  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||| |||||||          ||| ||| |    
T  52794091 tttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtggtaaacccttgtttgtgagttttaaaaaaaccaagggaaatg 52793992  T
Q  142 ttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggg 198  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  52793991 ttttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggg 52793935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 5331642 - 5331800
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||  ||||||||||| |||| |||||||        | || ||||||    
T  5331642 tttgtttgcgagttaggttttggaggggaggggaagggaaggaaaggcttatggat-ggtaaacccttgtttgcgagttttaaaaaaacaagggaaaggt 5331740  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  5331741 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 5331800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 7047755 - 7047914
Alignment:
Q  43 ttttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaagg 141  Q
    ||||||||| ||||||||||||||||||||||| | ||||| |||||||| |||||| ||||||||||| |||| |||||||        | || || ||    
T  7047755 ttttgtttgcgagttgggttttggaggggagggaaagggaaggaaaggct-atggagtggtaaacccttgtttgcgagttttaaaaaaacaagggaaggg 7047853  T
Q  142 ttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||    
T  7047854 ttttggggggttttgaagggtttcatttgcccaattttaaagttcccccaaattggggggt 7047914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 19007842 - 19007683
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggag-ttttnnnnnnntaggtaaaggt 142  Q
    |||||||| ||||||||||||||||  ||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||         ||| ||||||    
T  19007842 tttgtttgcgagttgggttttggagatgagggtaggggaaggaaaggcttatggagaggtaaacccttgtttgggagctttaaaaaaacaagggaaaggt 19007743  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||    |||||||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  19007742 ttcagcgggttttgaagggtttcatttgtccaattttaaagttccccgaaattgaggggt 19007683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 13282476 - 13282318
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||| |||| |||||||||||| || || ||||||||||||||| | ||||||||| |||| |||||||        | || ||||||    
T  13282476 tttgtttgcgagttggattttagaggggaggggaaggaaaggaaaggcttatggagtg-taaacccttatttgcgagttttaaaaaaacaagggaaaggt 13282378  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  13282377 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 13282318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 31167746 - 31167588
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    ||||||||  |||||| ||||||||||||||||| ||||| ||||||||||||||| ||||| ||||| |||| |||||||        | || ||| ||    
T  31167746 tttgtttgcaagttggattttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcgagttttaaaaaaacaagggaaatgt 31167648  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  31167647 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 31167588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 29453553 - 29453462
Alignment:
Q  148 ggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    |||||||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||| |||||||||||||||| | || |||||||    
T  29453553 ggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttaaacatacaaattgacaattttgccctcttaataat 29453462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 4606807 - 4606651
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||  ||||||||||||||||| ||||| ||||||||||||||| ||||| ||||| ||||  ||||||        | || ||||||    
T  4606807 tttgtttgcgagttgaattttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcaagttttaaaaatacaagggaaaggt 4606709  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    |||| |||||||||||||| || ||||||||| |||||||||||||| ||||||||||    
T  4606708 tttggggggttttgaagggcttaatttgtccaattttaaagttcccccaaattggggg 4606651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 13276041 - 13276199
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||  ||||||||||||||||| ||||| |||| |||||||||| ||||| ||||| ||||  ||||||        | || ||||||    
T  13276041 tttgtttgggagttgaattttggaggggaggggaagggaaggaaaagcttatggagtggtaa-cccttgtttgcaagttttaaaaaaacaagggaaaggt 13276139  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||    
T  13276140 tttggggggttttgaagggtttaatttgtccaattttaaagttcccccaaattggagggt 13276199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 8406035 - 8406193
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnt-aggtaaaggt 142  Q
    |||||||| |||||||||||||||||||| ||||||| || ||||||||| | ||| | ||||||||| |||| |||||||       | ||| ||||||    
T  8406035 tttgtttgggagttgggttttggaggggaagggagggaaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttaaaaaaataagggaaaggt 8406133  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| || |||| |||| ||||| |||||||| || |||||||||    
T  8406134 tttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggt 8406193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 49846522 - 49846623
Alignment:
Q  137 aaaggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataat 236  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||||||||||   |||||||||||| || |||  ||||||||||||||||| || ||||    
T  49846522 aaaggttttggggggttttgaagg-tttcatttgtccaattttaaagttccttcaaattggggggttaatcatataaattgacaattttgtcctcttaat 49846620  T
Q  237 aat 239  Q
    |||    
T  49846621 aat 49846623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 16865395 - 16865459
Alignment:
Q  137 aaaggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||||||||| |||||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  16865395 aaaggttttggggggttttgaagggtt-catttgtccaattttaaagttcccccaaattggggggt 16865459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 55346706 - 55346816
Alignment:
Q  137 aaaggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattgg--------ggggtcaaacatgcaaattgacaattttgtc 228  Q
    |||||||||| ||||| |||||||| |||||||||||| |||||||||||||| |||||||        ||||| |||||| |||||||||||||||| |    
T  55346706 aaaggttttggggggtcttgaagggcttcatttgtccaattttaaagttcccccaaattgggaggttttggggttaaacatacaaattgacaattttgcc 55346805  T
Q  229 ttcataataat 239  Q
     ||||||||||    
T  55346806 ctcataataat 55346816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 26413003 - 26413161
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggt-aaaggt 142  Q
    |||| ||| |||||| |||||||| |||||| |||||||| |||| | |||||||||||||||| ||| |||| |||||||        | || ||||||    
T  26413003 tttggttgcgagttgagttttggatgggaggagaggggaaggaaatgattatggagaggtaaactcttgtttgtgagttttaaaaaaacaagtgaaaggt 26413102  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| ||| |||||||||| ||||| |||||| ||||||| |||||| |||||| |||||    
T  26413103 tttg-gggattttgaagggcttcatctgtccaattttaaaattccccaaaattgaggggt 26413161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 30760905 - 30760778
Alignment:
Q  75 ggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggttttgtggggttttgaagggtttcatttgtcc 173  Q
    ||||||||| ||||||||||||||| | ||||||||| |||| |||||||        | || ||| |||||| |||||||||||||| || ||||||||    
T  30760905 ggaggggaaggaaaggcttatggagtg-taaacccttgtttgcgagttttaaaaaaacaagggaaatgttttggggggttttgaagggcttaatttgtcc 30760807  T
Q  174 agttttaaagttcccctaaattggggggt 202  Q
    | ||||||||||| || ||||||||||||    
T  30760806 aattttaaagttctcccaaattggggggt 30760778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 53251670 - 53251731
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggag-----gggaggggaatgaaaggcttatggaga 100  Q
    |||||||| |||||||||||||||| ||||     |||||||||| ||||||||||||||||    
T  53251670 tttgtttgagagttgggttttggagaggagaggaggggaggggaaggaaaggcttatggaga 53251731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 8529 - 8687
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||||||| |||| ||||||||||| |||| |||||||         ||| ||||||    
T  8529 tttgtttgtgagtcgggttttggaggggaggggaagggaaggaaaggctta-ggagtggtaaacccttgtttgtgagttttcaaaaaacaagggaaaggt 8627  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||| ||||| ||||||||||||    
T  8628 tttggggggttttgaagggcttcatttgtccaattttaaagatcccccaaattggggggt 8687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 24077591 - 24077433
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||| ||||| |||| |||||||        | || ||||||    
T  24077591 tttgtttgcgagttggattttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcgagttttacaaaaacaagggaaaggt 24077493  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  24077492 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 24077433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 6618345 - 6618505
Alignment:
Q  43 ttttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaagg 141  Q
    ||||||||| ||||||| ||||||||||||||| | ||||| |||||| |||||||| ||||||||||| |||| |||||||         ||| |||||    
T  6618345 ttttgtttgcgagttggattttggaggggagggaaagggaaggaaaggtttatggagtggtaaacccttgtttgcgagttttaaaaaaacaagggaaagg 6618444  T
Q  142 ttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||| ||||    
T  6618445 ttttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggagggt 6618505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 6920550 - 6920709
Alignment:
Q  43 ttttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta--ggtaaag 140  Q
    ||||||||| ||||||| ||||| ||||||| |||  |||| ||||||||||||||| |||||| |||| |||| |||||||        |  || ||||    
T  6920550 ttttgtttgcgagttggattttgaaggggagaggaatggaaggaaaggcttatggagtggtaaatccttgtttgtgagttttaaaaaaacaaagggaaag 6920649  T
Q  141 gttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    |||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  6920650 gttttgaggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggg 6920709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 37505301 - 37505143
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnt-aggtaaaggt 142  Q
    |||||||| |||||||||||||||||||| |||||||||| ||||||||| | ||| | ||||||||| |||| |||||||       | ||| ||||||    
T  37505301 tttgtttgggagttgggttttggaggggaagggaggggaaggaaaggcttgt-gagtgctaaacccttgtttgtgagttttaaaaaaataagggaaaggt 37505203  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| || |||| |||| ||||| |||||||| || |||||||||    
T  37505202 tttggggggttttgaaggggttaatttatccaattttagagttcccccaatttggggggt 37505143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 202
Target Start/End: Complemental strand, 23101852 - 23101715
Alignment:
Q  65 ggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggttttgtggggttttgaagggtt 163  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||| || |||| |||||||       || || ||||||||||  ||||||||||||  |    
T  23101852 ggaggggaggggaagggaaggaaaggcttatggagtggtaaacc-ttgtttgcgagttttaaaaaaataagggaaaggttttggcgggttttgaaggact 23101754  T
Q  164 tcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  23101753 tcatttgtccaattttaaaattcccctaaattggggggt 23101715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 42379241 - 42379321
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt 124  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||| |||||| |||| |||| |||||||    
T  42379241 tttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggtttatggagtggtaaatccttgtttgtgagtttt 42379321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 198
Target Start/End: Complemental strand, 19521154 - 19521029
Alignment:
Q  75 ggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnt--aggtaaaggttttgtggggttttgaagggtttcatttgtc 172  Q
    |||||||||||| ||| |||||||| ||||||||||| |||| |||||||          ||| |||| ||||| |||||||||||||| ||||||||||    
T  19521154 ggaggggaatgagaggtttatggagtggtaaacccttgtttgtgagttttaaaaaaaataagggaaagattttggggggttttgaagggattcatttgtc 19521055  T
Q  173 cagttttaaagttcccctaaattggg 198  Q
    || ||||||| |||||||||||||||    
T  19521054 caattttaaaattcccctaaattggg 19521029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 29692125 - 29692063
Alignment:
Q  45 ttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaac 107  Q
    ||||||| ||||||||||||||| |||| |||| ||||| |||||||||||||||||||||||    
T  29692125 ttgtttgcgagttgggttttggaagggaagggaagggaaggaaaggcttatggagaggtaaac 29692063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 8807197 - 8807262
Alignment:
Q  137 aaaggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||||||||| | |||||||||||| |||||||||| | |||||||||||||| ||||||||||||    
T  8807197 aaaggttttgggcggttttgaagggcttcatttgtcaaattttaaagttcccccaaattggggggt 8807262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 10378178 - 10378117
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaa 105  Q
    |||||||| ||||||| |||||||||||| |||| ||||| ||||||||||||||| |||||    
T  10378178 tttgtttgcgagttggattttggaggggaagggaagggaaggaaaggcttatggagtggtaa 10378117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 42379351 - 42379405
Alignment:
Q  148 ggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||||||||||| | |||||||||||| |||||||||||||| ||||| ||||||    
T  42379351 ggggttttgaagagcttcatttgtccaattttaaagttcccccaaattagggggt 42379405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 1793 - 1923
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||  |||||||||| |||| |||||||         ||| ||| ||    
T  1793 tttgtttgtgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtcgtaaacccttgtttgtgagttttaaaaaaacaagggaaaagt 1892  T
Q  143 tttgtggggttttgaagggtttcatttgtcc 173  Q
    |||| ||||||||||||||||||||||||||    
T  1893 tttggggggttttgaagggtttcatttgtcc 1923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 26631452 - 26631298
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||| |||||||         | | ||||||    
T  26631452 tttgtttgcgagttgggttttggaggggagggggagggaaggaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaaacaaaggaaaggt 26631353  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattgg 197  Q
    |||| ||||||||||| || ||||||| |||| |||||||||||||| |||||||    
T  26631352 tttggggggttttgaacggcttcatttatccaattttaaagttcccccaaattgg 26631298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 26737427 - 26737273
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||| |||||||         | | ||||||    
T  26737427 tttgtttgcgagttgggttttggaggggagggggagggaaggaaaggcttatggagtggtaaacccttgtttgcgagttttaaaaaaacaaaggaaaggt 26737328  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattgg 197  Q
    |||| ||||||||||| || ||||||| |||| |||||||||||||| |||||||    
T  26737327 tttggggggttttgaacggcttcatttatccaattttaaagttcccccaaattgg 26737273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 28329895 - 28330087
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||| |||| |||||||        | || | |||     
T  28329895 tttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcgagttttaaaaaaacaaggcataggg 28329993  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
       | |||| ||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||| |||||||| ||||||| | || |||||||    
T  28329994 ---gggggggtttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttaaacatacaaattgaaaattttgccctcttaataat 28330087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 28507531 - 28507723
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||| |||| |||||||        | || | |||     
T  28507531 tttgtttgcgagttgggttttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcgagttttaaaaaaacaaggcataggg 28507629  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
       | |||| ||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||| |||||||| ||||||| | || |||||||    
T  28507630 ---gggggggtttgaagggcttcatttgtccaattttaaagttcccccaaattggggggttaaacatacaaattgaaaattttgccctcttaataat 28507723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 23306488 - 23306330
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||  ||||||||||||||||| ||||| ||||||||||||||| ||||| ||||| ||||  ||||||        | || ||||||    
T  23306488 tttgtttgcgagttgaattttggaggggaggggaagggaaggaaaggcttatggagtggtaa-cccttgtttgcaagttttaaaaaaacaagggaaaggt 23306390  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| || ||||||||| |||||||||||||| ||||||||||||    
T  23306389 tttggggggttttgaagggcttaatttgtccaattttaaagttcccccaaattggggggt 23306330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 16802187 - 16802380
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| ||||||| ||||||||||||||| | |  || ||| ||||||||||| | ||||||||| |||| |||||||        | || ||||||    
T  16802187 tttgtttgcgagttggattttggaggggagggaacga-aaggaacggcttatggagtg-taaacccttgtttgtgagttttaaaaaaacaagggaaaggt 16802284  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggtcaaacatgcaaattgacaattttgtcttcataataat 239  Q
    |||| |||||||||||||| ||||||||| || ||||||||||||||  |||| |||||| |||||| |||||||||||||||| | || |||||||    
T  16802285 tttggggggttttgaagggcttcatttgttcaattttaaagttcccc-caatttgggggttaaacatacaaattgacaattttgccctcttaataat 16802380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 4582075 - 4582241
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatgg-------agaggtaaacccttttttgggagttttnnnnnnnta-gg 135  Q
    |||||||| ||||||| ||||||||||||||||| ||||| |||||||| ||||       || |||||| |||| |||| |||||||        | ||    
T  4582075 tttgtttgcgagttggattttggaggggaggggaagggaaggaaaggctcatggctcatggagtggtaaatccttgtttgcgagttttaaaaaaacaagg 4582174  T
Q  136 taaaggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
     |||||||||| |||||||||||||| || ||||||||| |||||||||||||| ||||||||||||    
T  4582175 gaaaggttttggggggttttgaagggctttatttgtccaattttaaagttcccccaaattggggggt 4582241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 29730513 - 29730591
Alignment:
Q  45 ttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt 124  Q
    ||||||||||||||||||| ||||||||||||||||||| |||| | ||||||||  |||||||||| |||| |||||||    
T  29730513 ttgtttgtgagttgggtttcggaggggaggggaggggaaggaaatgtttatggag-tgtaaacccttgtttgcgagtttt 29730591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 30800411 - 30800483
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttg 116  Q
    |||||||| |||||||||||||||||||||||||||| ||  ||||||||||| || ||||||| ||| ||||    
T  30800411 tttgtttgcgagttgggttttggaggggaggggagggaaagaaaaggcttatgcagtggtaaactcttgtttg 30800483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 25359635 - 25359715
Alignment:
Q  43 ttttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt 124  Q
    ||||||||| ||||||| ||||||||||||||||| || || |||||||||||| ||  |||||||||| |||| |||||||    
T  25359635 ttttgtttgcgagttggattttggaggggaggggaaggaaaggaaaggcttatgaag-tgtaaacccttgtttgtgagtttt 25359715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 927295 - 927348
Alignment:
Q  42 attttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttat 95  Q
    |||||||||| |||||||||||| ||||  | |||||||||| |||||||||||    
T  927295 attttgtttgcgagttgggttttagaggaaaagggaggggaaggaaaggcttat 927348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 14629059 - 14629026
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggagggga 77  Q
    |||||||| |||||||||||||||||||||||||    
T  14629059 tttgtttgcgagttgggttttggaggggagggga 14629026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 4040 - 4191
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggtt 143  Q
    |||||||| |||||||||||||||||||    |||||||| |||||||||||||| ||||||||| || ||||||||||||       || | |||||||    
T  4040 tttgtttgcgagttgggttttggagggg----gaggggaaagaaaggcttatggaaaggtaaacctttgtttgggagttttaaaaaaataaggaaaggtt 4135  T
Q  144 ttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    ||| |||||||||||||| ||| ||| ||||  ||||||||| ||||||||| ||||    
T  4136 ttggggggttttgaagggcttcttttatcca-atttaaagtttccctaaatttgggg 4191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 47116 - 46958
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnnta-ggtaaaggt 142  Q
    |||||||| |||||||||||| |||||||||| | ||||| |||||||||||||||    |||||||| |||| |||||||        | || |||||     
T  47116 tttgtttgcgagttgggtttttgaggggagggaaagggaaggaaaggcttatggagtca-aaacccttgtttgcgagttttaaaaaaacaagggaaaggc 47018  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  47017 tttggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 46958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 73722 - 73652
Alignment:
Q  53 gagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttt 123  Q
    ||||||||||| | |||||| |||||||||| ||||||||||||||| ||||||||||| |||| ||||||    
T  73722 gagttgggtttcgaaggggaagggaggggaaggaaaggcttatggagtggtaaacccttgtttgcgagttt 73652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 73634 - 73572
Alignment:
Q  139 aggttttgtgggg-ttttgaagggtttcatttgtccagttttaaagttcccctaaattggggg 200  Q
    |||||||| |||| |||||||||| |||||||| ||| |||||||||||||| ||||| ||||    
T  73634 aggttttgggggggttttgaagggcttcatttgaccaattttaaagttcccccaaatttgggg 73572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1147 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1147
Description:

Target: scaffold1147; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 613 - 454
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagtttt-nnnnnnntaggtaaaggt 142  Q
    ||||||| |||||||| |||||||| ||| |||||||||| ||||||||||||||| ||||||| ||| |||| |||||||         | | ||| ||    
T  613 tttgtttatgagttggattttggagaggaagggaggggaaggaaaggcttatggagtggtaaactcttgtttgcgagttttaaaaaaacaaaggaaaagt 514  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||| |||||||||||||| ||||||| | || |||||||||||||| |||||| |||||    
T  513 tttggggggttttgaagggcttcatttcttcaattttaaagttcccccaaattgaggggt 454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 24955 - 24797
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntaggtaaaggtt 143  Q
    |||||||| ||||| |||||||||||||| |||||| ||| ||||| ||||||||| |||||| |||| |||| ||||||          || ||   ||    
T  24955 tttgtttgcgagttcggttttggaggggaagggaggagaaggaaagacttatggagtggtaaatccttatttgcgagtttaaaaaaaaacggaaatattt 24856  T
Q  144 ttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    | | |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  24855 tgggggggttttgaagggcttcatttgtccaattttaaagttcccccaaattggggggt 24797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 13319 - 13384
Alignment:
Q  137 aaaggttttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    |||||||||| |||||| ||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  13319 aaaggttttggggggttctgaagggcttcatttgtccaattttaaagttccccaaaattggggggt 13384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 10929 - 11087
Alignment:
Q  44 tttgtttgtgagttgggttttggaggggaggggaggggaatgaaaggcttatggagaggtaaacccttttttgggagttttnnnnnnntag-gtaaaggt 142  Q
    |||||||| ||||||| |||||||||| ||||||  |||| ||| ||||||||||| ||||| ||||| |||| |||||||        |  | ||| ||    
T  10929 tttgtttgcgagttggattttggagggtaggggaatggaaggaatggcttatggagtggtaa-cccttgtttgcgagttttaaaaaaacaaaggaaaagt 11027  T
Q  143 tttgtggggttttgaagggtttcatttgtccagttttaaagttcccctaaattggggggt 202  Q
    ||||  ||||||||||||  |||||||||||| ||||||||||| || ||||||||||||    
T  11028 tttggagggttttgaaggacttcatttgtccaattttaaagttctcccaaattggggggt 11087  T

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