View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468_high_28 (Length: 252)
Name: NF5468_high_28
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 23938742 - 23938494
Alignment:
| Q |
1 |
acaactgtcatgaattatggatttgacttttactgttgaatcttgaattattgacttgactttgatggttgagtcttgttgtcgaattattagagaacta |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23938742 |
acaactgtcatgaattatggatttgacttttaccgttgaatcttgaattattgacttgactttgatggttgagtcttgttgtcgaattattagagaacta |
23938643 |
T |
|
| Q |
101 |
ttaaattattcttgccctaattctttagtgactgaatcattgattctnnnnnnnntcataattcacgagtgagtttaagatcaatattaagcatggatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23938642 |
ttaaattattcttgccctaattctttagtgactgaatcattgattctaaaaaaaatcataattcacaagtgagtttaagatcaatattaagcatggatga |
23938543 |
T |
|
| Q |
201 |
acaaaaattcataattagaatttcaagggtttggatttattcctatgctac |
251 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
23938542 |
acaaaaattcataattag--tttcaagagtttggatttattcctatgctac |
23938494 |
T |
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