View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5468_high_9 (Length: 357)

Name: NF5468_high_9
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5468_high_9
NF5468_high_9
[»] chr3 (22 HSPs)
chr3 (16-305)||(23939158-23939463)
chr3 (294-357)||(23938957-23939017)
chr3 (177-286)||(52500837-52500946)
chr3 (162-286)||(35461484-35461608)
chr3 (179-285)||(51665947-51666053)
chr3 (174-286)||(42392822-42392934)
chr3 (179-286)||(4601424-4601531)
chr3 (179-285)||(43775223-43775329)
chr3 (179-285)||(54158266-54158372)
chr3 (184-269)||(475307-475392)
chr3 (174-285)||(40756744-40756856)
chr3 (181-289)||(50729520-50729628)
chr3 (181-289)||(50783221-50783329)
chr3 (179-285)||(7824476-7824582)
chr3 (179-269)||(9349698-9349788)
chr3 (179-285)||(29689504-29689610)
chr3 (181-270)||(36229018-36229107)
chr3 (181-287)||(8137657-8137761)
chr3 (187-285)||(28844504-28844602)
chr3 (177-210)||(33334683-33334716)
chr3 (180-253)||(38257326-38257399)
chr3 (213-253)||(46800088-46800128)
[»] chr4 (18 HSPs)
chr4 (181-285)||(12767087-12767191)
chr4 (174-269)||(37134064-37134159)
chr4 (181-274)||(1125898-1125991)
chr4 (179-270)||(51287616-51287708)
chr4 (179-285)||(1173951-1174057)
chr4 (174-252)||(33770601-33770679)
chr4 (179-285)||(43139928-43140034)
chr4 (181-270)||(2075521-2075609)
chr4 (179-270)||(31014997-31015088)
chr4 (179-286)||(34739279-34739386)
chr4 (179-285)||(53457824-53457930)
chr4 (181-286)||(19849527-19849632)
chr4 (179-286)||(26424880-26424986)
chr4 (179-285)||(238480-238586)
chr4 (179-225)||(28798410-28798456)
chr4 (183-224)||(29581069-29581110)
chr4 (179-252)||(37395657-37395730)
chr4 (179-252)||(52172012-52172085)
[»] chr8 (16 HSPs)
chr8 (187-285)||(18386708-18386806)
chr8 (179-269)||(18752357-18752447)
chr8 (183-285)||(39435282-39435384)
chr8 (179-285)||(70545-70651)
chr8 (179-279)||(39303315-39303416)
chr8 (179-269)||(41849253-41849343)
chr8 (174-227)||(42364719-42364772)
chr8 (181-288)||(41753004-41753111)
chr8 (179-285)||(6602540-6602646)
chr8 (179-285)||(6677993-6678099)
chr8 (179-285)||(7813322-7813428)
chr8 (177-267)||(40932727-40932817)
chr8 (179-285)||(45264662-45264767)
chr8 (179-224)||(5385399-5385444)
chr8 (183-231)||(9775068-9775116)
chr8 (181-285)||(31695293-31695397)
[»] chr6 (7 HSPs)
chr6 (183-285)||(12252023-12252125)
chr6 (174-286)||(4464126-4464238)
chr6 (174-286)||(28322931-28323043)
chr6 (182-285)||(2959149-2959252)
chr6 (174-285)||(33621494-33621605)
chr6 (179-285)||(33704216-33704322)
chr6 (174-286)||(21000691-21000803)
[»] chr2 (15 HSPs)
chr2 (173-286)||(9815814-9815925)
chr2 (174-285)||(15782590-15782700)
chr2 (174-286)||(19048753-19048865)
chr2 (174-286)||(39831461-39831572)
chr2 (179-285)||(45125187-45125293)
chr2 (177-285)||(34234530-34234636)
chr2 (179-267)||(44181909-44181997)
chr2 (179-285)||(10639628-10639734)
chr2 (179-285)||(33083576-33083682)
chr2 (181-285)||(11459715-11459819)
chr2 (177-285)||(19816220-19816328)
chr2 (179-285)||(34460369-34460475)
chr2 (248-285)||(3177564-3177601)
chr2 (187-279)||(16654369-16654461)
chr2 (181-273)||(43778492-43778584)
[»] chr7 (21 HSPs)
chr7 (174-285)||(10220489-10220600)
chr7 (179-285)||(25112269-25112375)
chr7 (179-285)||(32606352-32606458)
chr7 (179-285)||(46427360-46427466)
chr7 (179-286)||(11355822-11355929)
chr7 (179-270)||(29484777-29484868)
chr7 (179-285)||(31770554-31770660)
chr7 (174-225)||(5772836-5772887)
chr7 (174-285)||(47557781-47557892)
chr7 (179-285)||(38033729-38033835)
chr7 (179-285)||(48444174-48444280)
chr7 (179-279)||(27229499-27229600)
chr7 (181-273)||(5462974-5463066)
chr7 (174-285)||(25546292-25546403)
chr7 (179-285)||(4106738-4106844)
chr7 (179-285)||(23358185-23358291)
chr7 (181-279)||(35577900-35577998)
chr7 (179-272)||(4107322-4107415)
chr7 (181-273)||(28110955-28111047)
chr7 (174-238)||(31288241-31288305)
chr7 (189-277)||(48146761-48146849)
[»] chr1 (13 HSPs)
chr1 (174-285)||(49783707-49783818)
chr1 (174-286)||(29994400-29994512)
chr1 (179-285)||(41808202-41808308)
chr1 (174-273)||(7275693-7275792)
chr1 (179-286)||(32007073-32007180)
chr1 (183-270)||(39284305-39284392)
chr1 (179-285)||(45813033-45813139)
chr1 (179-286)||(5055810-5055917)
chr1 (181-219)||(26264560-26264598)
chr1 (170-267)||(3716381-3716477)
chr1 (179-288)||(28455871-28455980)
chr1 (179-211)||(13109844-13109876)
chr1 (179-211)||(13183198-13183230)
[»] scaffold0038 (1 HSPs)
scaffold0038 (174-286)||(114251-114363)
[»] chr5 (6 HSPs)
chr5 (181-285)||(9576985-9577089)
chr5 (183-253)||(17984768-17984838)
chr5 (179-285)||(35317719-35317825)
chr5 (174-279)||(28591367-28591472)
chr5 (179-285)||(1191562-1191668)
chr5 (179-211)||(23262618-23262650)
[»] scaffold0352 (1 HSPs)
scaffold0352 (179-286)||(8965-9072)
[»] scaffold1348 (1 HSPs)
scaffold1348 (179-285)||(884-990)
[»] scaffold0119 (2 HSPs)
scaffold0119 (179-285)||(13973-14079)
scaffold0119 (179-285)||(19653-19759)
[»] scaffold0053 (1 HSPs)
scaffold0053 (179-270)||(22178-22269)
[»] scaffold0032 (1 HSPs)
scaffold0032 (179-286)||(56480-56587)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 23939463 - 23939158
Alignment:
Q  16 cttctgtcatcatcacatcactcacactatactttccatctttggctatttgtgagac--ttgcacgattatctcataccaatcaaggtaatctcaccct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||||||||||||||||||||||||||||||||||||||||    
T  23939463 cttctgtcatcatcacatcactcacactatactttccatctttggctatatatgagacatttgcacgattatctcataccaatcaaggtaatctcaccct 23939364  T
Q  114 tttctatacttcatattcattgtttctatctgtcc-------------nnnnnnnnctctcagataaaatgacaaactactgaaattaaactcacacaca 200  Q
    ||| |||||||||||||||||||||||||||||||                      ||||||||||||||| |||||| |||||||||||||||||| |    
T  23939363 tttttatacttcatattcattgtttctatctgtcctatttttttttttttttttttgtctcagataaaatgataaactattgaaattaaactcacacaaa 23939264  T
Q  201 actgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaacttatagactatcc-ttttttcta 299  Q
    | ||| ||||| |||||| |||||| ||||||||||| |||  |||||||||   ||||||||| ||||||||||||||||||||| ||| |||||||||    
T  23939263 attgtgaggttacgggtttaaacccgaatcatgacattcgacgttacaattttgatatttgtcaattgagttagaacttatagactgtcctttttttcta 23939164  T
Q  300 tcatat 305  Q
    ||||||    
T  23939163 tcatat 23939158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 23939017 - 23938957
Alignment:
Q  294 tttctatcatatggtatatagttatattgccatctttcaattatgatatattttgttttgattg 357  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  23939017 tttctatcatatggtatatagt---attgccatctttcaattatgatatattttgttttgattg 23938957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 52500946 - 52500837
Alignment:
Q  177 ctactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaa 276  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||| |||||  |||||||| ||||  |||||||||||   ||||| |||||||| ||| |    
T  52500946 ctactgaaaataaactcacacacaactgtgaggtttcaggttcgaacccggatcatgacgtccggccttacaatttcgacatttgccagttgagctagga 52500847  T
Q  277 cttatagact 286  Q
    ||| ||||||    
T  52500846 cttctagact 52500837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 35461484 - 35461608
Alignment:
Q  162 agataaaatgacaaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttg 261  Q
    |||| |||||| || |||| |||| ||||||||||||||||||| ||||| ||||||| |||||  ||||  || ||||| ||| ||||||| | |||||    
T  35461484 agatgaaatgataatctacagaaaataaactcacacacaactgtgaggttccgggttcgaacccggatcacaacgtccgaccttgcaatttcggcatttg 35461583  T
Q  262 tcagttgagttagaacttatagact 286  Q
     |||||||| |||||||| ||||||    
T  35461584 ccagttgagctagaacttctagact 35461608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 51665947 - 51666053
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||||||||  ||||||| ||||||  ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  51665947 actgaaaataaactcacacacaactgtaaggtcccgggttcgaacccaggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 51666046  T
Q  279 tatagac 285  Q
    | |||||    
T  51666047 tctagac 51666053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 42392822 - 42392934
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| ||||||||||||||||||||||| ||| ||||  ||||||| | |||  |||||||| ||||| ||| ||||||| | ||||| |||||||| ||    
T  42392822 aaaccactgaaattaaactcacacacaattgtgaggtcccgggttcgagcccggatcatgacgtccgaccttgcaatttcggcatttgccagttgagcta 42392921  T
Q  274 gaacttatagact 286  Q
    | |||| ||||||    
T  42392922 ggacttctagact 42392934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 4601531 - 4601424
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||| ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  4601531 actgaaaataaactcacacacaactgtgaggttccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 4601432  T
Q  279 tatagact 286  Q
    | ||||||    
T  4601431 tctagact 4601424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 43775329 - 43775223
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    |||||||||||||||| | |||||||| || || ||| ||| ||| ||| |||  || ||||| ||||||||||| | ||||| ||||||||||||||||    
T  43775329 actgaaattaaactcaaatacaactgtgagattccggattcgaacgcaagtcacaacgtccgaccttacaatttcggcatttgccagttgagttagaact 43775230  T
Q  279 tatagac 285  Q
    | |||||    
T  43775229 tttagac 43775223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 54158372 - 54158266
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||  |||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  54158372 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 54158273  T
Q  279 tatagac 285  Q
    | |||||    
T  54158272 tctagac 54158266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 269
Target Start/End: Original strand, 475307 - 475392
Alignment:
Q  184 aattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttga 269  Q
    |||||||||||||||||||||| ||||| || |||| |||||  |||||||| ||||| ||| ||||||||| ||||  |||||||    
T  475307 aattaaactcacacacaactgtgaggttccgagttcgaacccggatcatgacgtccgaccttgcaatttcagcatttcccagttga 475392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 40756744 - 40756856
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatga-catccgatcttacaatttcagtatttgtcagttgagtt 272  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||| || ||  ||||||| | || || ||| ||||||  | |||| |||||||||||    
T  40756744 aaactactgaaattaaactcacacgcaactgtgaggtctcgggttcgaatccggatcatgatcgtctgaccttgcaattttggcatttttcagttgagtt 40756843  T
Q  273 agaacttatagac 285  Q
    || |||| |||||    
T  40756844 aggacttctagac 40756856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 50729628 - 50729520
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaactta 280  Q
    |||||||||||||||| | |||||  |||| ||  |||| || ||| |||| ||| || || ||||||||||| | |||||||||||||| ||||||||     
T  50729628 tgaaattaaactcacataaaactgcgaggtctcatgttcgaatccagatcacgacgtctgaccttacaatttcggcatttgtcagttgagctagaacttc 50729529  T
Q  281 tagactatc 289  Q
    |||||||||    
T  50729528 tagactatc 50729520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 50783221 - 50783329
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaactta 280  Q
    |||||||||||||||| | |||||  |||| ||  |||| || ||| |||| ||| || || ||||||||||| | |||||||||||||| ||||||||     
T  50783221 tgaaattaaactcacataaaactgcgaggtctcatgttcgaatccagatcacgacgtctgaccttacaatttcggcatttgtcagttgagctagaacttc 50783320  T
Q  281 tagactatc 289  Q
    |||||||||    
T  50783321 tagactatc 50783329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 7824476 - 7824582
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  7824476 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 7824575  T
Q  279 tatagac 285  Q
    | |||||    
T  7824576 tctagac 7824582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 9349698 - 9349788
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttga 269  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||  |||| ||| ||||| ||| ||||||| | ||||| |||||||    
T  9349698 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacgacgtccgaccttgcaatttcggcatttgccagttga 9349788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 29689504 - 29689610
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  29689504 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 29689603  T
Q  279 tatagac 285  Q
    | |||||    
T  29689604 tctagac 29689610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 36229018 - 36229107
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgag 270  Q
    ||||| ||||||||||||||||||| ||||  ||||||| |||||  |||||||| ||||  ||| ||||||| | ||||| ||||||||    
T  36229018 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgccagttgag 36229107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 8137657 - 8137761
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaactta 280  Q
    ||||||||||||||||  ||||||| ||||||| | ||||||| |   ||||||| ||||| ||| ||||||  | |||||| ||||||| |||||| ||    
T  8137657 tgaaattaaactcaca--caactgtgaggtttcagattcaaactcgggtcatgacgtccgaccttgcaatttttgcatttgttagttgagctagaacgta 8137754  T
Q  281 tagacta 287  Q
    |||||||    
T  8137755 tagacta 8137761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 285
Target Start/End: Complemental strand, 28844602 - 28844504
Alignment:
Q  187 taaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaacttatagac 285  Q
    ||||||||||||||||||| ||||| | ||||| |||||   |||  || ||||  ||| ||||||| | |||||||||||||| |||||||| |||||    
T  28844602 taaactcacacacaactgtgaggttccaggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgtcagttgagctagaacttctagac 28844504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 33334716 - 33334683
Alignment:
Q  177 ctactgaaattaaactcacacacaactgtaaggt 210  Q
    ||||||||||||||||||||||||||||| ||||    
T  33334716 ctactgaaattaaactcacacacaactgtgaggt 33334683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 38257326 - 38257399
Alignment:
Q  180 ctgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttc 253  Q
    |||||||||||||||||||||| ||| |||||  |||||| ||||||  ||| ||| ||||| ||| |||||||    
T  38257326 ctgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtcacgacgtccgaccttgcaatttc 38257399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 46800088 - 46800128
Alignment:
Q  213 cgggttcaaacccaaatcatgacatccgatcttacaatttc 253  Q
    ||||||||||||| | |||||||||||||||| ||||||||    
T  46800088 cgggttcaaaccccagtcatgacatccgatctaacaatttc 46800128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 181 - 285
Target Start/End: Complemental strand, 12767191 - 12767087
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaactta 280  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||| |||||||| ||||||||||||||||| | ||||  |||||||| ||| ||||     
T  12767191 tgaaattaaactcacacacaactgtgaggtttcggattcgaacccagatcatgacgtccgatcttacaatttcggcatttaccagttgagctaggacttc 12767092  T
Q  281 tagac 285  Q
    |||||    
T  12767091 tagac 12767087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 37134159 - 37134064
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttga 269  Q
    |||| ||||||||||||||||||||||||||| | ||||||||||| |||||  |||||||||||||| |||  |||||||| ||||| |||||||    
T  37134159 aaaccactgaaattaaactcacacacaactgtgaagtttcgggttcgaacccggatcatgacatccgaccttgtaatttcagcatttgccagttga 37134064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 1125991 - 1125898
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttag 274  Q
    |||||||||||||| |||||||||| || | | |||||||||  ||||||| |||||||||||||||||||||   ||||  ||||||||||||    
T  1125991 tgaaattaaactcatacacaactgtgagatcttgggttcaaattcaaatcacgacatccgatcttacaatttcgacatttcacagttgagttag 1125898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 51287708 - 51287616
Alignment:
Q  179 actgaaattaaa-ctcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgag 270  Q
    |||||||||||| ||||||||||||||| |||||||||||| ||||||| |||| ||| || || ||||||||||  | ||||||||| ||||    
T  51287708 actgaaattaaaactcacacacaactgtgaggtttcgggtttaaacccagatcacgacgtctgaccttacaattttggcatttgtcagctgag 51287616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 1174057 - 1173951
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| ||||||  ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  1174057 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 1173958  T
Q  279 tatagac 285  Q
    | |||||    
T  1173957 tctagac 1173951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 33770679 - 33770601
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaattt 252  Q
    |||| ||||||||||||||||||||||||| | | ||  ||||||| ||||||||||||||| | ||| ||||||||||    
T  33770679 aaaccactgaaattaaactcacacacaactatgaagtcccgggttcgaacccaaatcatgacgttcgaccttacaattt 33770601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 43139928 - 43140034
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| |||||||    
T  43139928 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctagaact 43140027  T
Q  279 tatagac 285  Q
    | |||||    
T  43140028 tctagac 43140034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 2075609 - 2075521
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgag 270  Q
    |||||||||||||||||| |||||| ||||  ||||||| ||||||||||||||| ||||  ||| |||||| | |||||| ||||||||    
T  2075609 tgaaattaaactcacacataactgtgaggtcccgggttcgaacccaaatcatgacgtccgcccttgcaatttga-tatttggcagttgag 2075521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 31015088 - 31014997
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgag 270  Q
    ||||||||||||||||||||||||||| |||||  |  ||| ||||| ||||||||  ||||| |||||||||||  |||||  ||||||||    
T  31015088 actgaaattaaactcacacacaactgtgaggttctgaattcgaacccgaatcatgatgtccgaccttacaatttccatatttagcagttgag 31014997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 34739386 - 34739279
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  34739386 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 34739287  T
Q  279 tatagact 286  Q
    | ||||||    
T  34739286 tctagact 34739279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 53457930 - 53457824
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||| ||| |||||   ||||||| ||||| ||| ||||||| | ||||| |||||||| ||| |||    
T  53457930 actgaaaataaactcacacacaactgtgaggtcccggattcgaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggact 53457831  T
Q  279 tatagac 285  Q
    | |||||    
T  53457830 tctagac 53457824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 19849527 - 19849632
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaactta 280  Q
    ||||| ||||||||||||||||||| ||||  ||||||| |||||  |||| ||| ||||  ||| ||||||| | ||||| |||||||| ||| ||||     
T  19849527 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttc 19849626  T
Q  281 tagact 286  Q
    ||||||    
T  19849627 tagact 19849632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 26424880 - 26424986
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  26424880 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccg-ccttgcaatttcggcatttgccagttgagctaggact 26424978  T
Q  279 tatagact 286  Q
    | ||||||    
T  26424979 tctagact 26424986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 238480 - 238586
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| ||||||  ||||| | |||   ||| ||||||| | ||||| |||||||| ||| |||    
T  238480 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtcatggcgtccagccttgcaatttcggcatttgacagttgagctaggact 238579  T
Q  279 tatagac 285  Q
    | |||||    
T  238580 tctagac 238586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 28798410 - 28798456
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaaccc 225  Q
    ||||||| ||||||||||||||||||||||||  ||||||| |||||    
T  28798410 actgaaaataaactcacacacaactgtaaggtcccgggttcgaaccc 28798456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 29581069 - 29581110
Alignment:
Q  183 aaattaaactcacacacaactgtaaggtttcgggttcaaacc 224  Q
    ||||||||||||||||||||||| |||| |||||||| ||||    
T  29581069 aaattaaactcacacacaactgtgaggtctcgggttcgaacc 29581110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 37395730 - 37395657
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaattt 252  Q
    |||||||||| |||||||||||||||| ||||||| | ||  ||| | ||||||||| ||||| ||| ||||||    
T  37395730 actgaaattatactcacacacaactgtgaggtttcagatttgaactcgaatcatgacgtccgaccttgcaattt 37395657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 52172012 - 52172085
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaattt 252  Q
    ||||||||||||||||||||||| ||| |||||   ||||||||||| ||||| ||| || |  ||||||||||    
T  52172012 actgaaattaaactcacacacaattgtgaggttctaggttcaaacccgaatcacgacgtctggccttacaattt 52172085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 285
Target Start/End: Complemental strand, 18386806 - 18386708
Alignment:
Q  187 taaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaacttatagac 285  Q
    ||||||||||||||||||| ||||  ||||||| ||||| | ||||||||||||| ||| ||||||||| |||||||||||||| |||||||| |||||    
T  18386806 taaactcacacacaactgtgaggtcccgggttcgaacccgagtcatgacatccgaccttgcaatttcagcatttgtcagttgagctagaacttctagac 18386708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 18752447 - 18752357
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttga 269  Q
    ||||||||||||| ||||||||||||||||||| ||||||| |||||  |||| ||| ||||| ||||||||||| |||||||||||||||    
T  18752447 actgaaattaaacccacacacaactgtaaggttccgggttcgaaccccgatcacgacgtccgaccttacaatttcggtatttgtcagttga 18752357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 39435384 - 39435282
Alignment:
Q  183 aaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaacttata 282  Q
    ||||||||||||||||||||||| |||| |||||||| |||||| |||||||| ||||| ||| ||||||    ||||| |||||||| |||||||| ||    
T  39435384 aaattaaactcacacacaactgtgaggtctcgggttcgaacccagatcatgacgtccgaccttgcaattttgacatttgccagttgagctagaacttcta 39435285  T
Q  283 gac 285  Q
    |||    
T  39435284 gac 39435282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 70545 - 70651
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  |||||||||||||   ||||||| ||||| ||| ||||||| | ||||| |||||||| ||| |||    
T  70545 actgaaaataaactcacacacaactgtgaggtcccgggttcaaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggact 70644  T
Q  279 tatagac 285  Q
    | |||||    
T  70645 tctagac 70651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 39303416 - 39303315
Alignment:
Q  179 actgaaattaaa-ctcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaac 277  Q
    |||||||||||| ||||||||||||||| |||| |||||||||||||||  ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| ||    
T  39303416 actgaaattaaaactcacacacaactgtgaggtctcgggttcaaacccatgtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggac 39303317  T
Q  278 tt 279  Q
    ||    
T  39303316 tt 39303315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 41849253 - 41849343
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttga 269  Q
    |||||||||||||||||||||||| || ||||| ||| ||| |||||| |||| ||| ||||| ||| ||||||| | ||||| |||||||    
T  41849253 actgaaattaaactcacacacaacagtgaggttccggattcgaacccagatcacgacgtccgaccttgcaatttcggcatttgccagttga 41849343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 42364719 - 42364772
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaa 227  Q
    |||||||||||||||||||||||||||||||| |  |||||| |||||||||||    
T  42364719 aaactactgaaattaaactcacacacaactgtgaaatttcggattcaaacccaa 42364772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 288
Target Start/End: Original strand, 41753004 - 41753111
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaactta 280  Q
    |||||||||||| |||||||||||| || ||| |||||| ||  |  |||| |||||||| |||| |||||||   |||||||||||||| ||| ||||     
T  41753004 tgaaattaaacttacacacaactgtgagattttgggttcgaattcggatcacgacatccggtcttgcaatttcgacatttgtcagttgagctaggacttc 41753103  T
Q  281 tagactat 288  Q
    ||||||||    
T  41753104 tagactat 41753111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 6602540 - 6602646
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  6602540 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 6602639  T
Q  279 tatagac 285  Q
    | |||||    
T  6602640 tctagac 6602646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 6677993 - 6678099
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  6677993 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 6678092  T
Q  279 tatagac 285  Q
    | |||||    
T  6678093 tctagac 6678099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 7813428 - 7813322
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| ||||| | |||  |||||||  ||| ||||||||| ||||| | |||||| ||| |||    
T  7813428 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgagtcacaacatccggccttgcaatttcagcatttgccggttgagctaggact 7813329  T
Q  279 tatagac 285  Q
    | |||||    
T  7813328 tctagac 7813322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 40932817 - 40932727
Alignment:
Q  177 ctactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagtt 267  Q
    ||||| |||||||| |||||||||||||| || |||||| ||| || ||  |||| ||| ||| |||||||||||||   |||||||||||    
T  40932817 ctactaaaattaaagtcacacacaactgtgagatttcggattcgaatccggatcacgacgtccaatcttacaatttcgacatttgtcagtt 40932727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 45264662 - 45264767
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    |||||||||||||||||||| |||||| ||||  ||||||| ||||| | ||| ||| | ||| | | ||||||| | ||||| |||||||||||| |||    
T  45264662 actgaaattaaactcacacaaaactgtgaggtcccgggttcgaacccgagtcacgacgttcga-cctgcaatttcggcatttgccagttgagttaggact 45264760  T
Q  279 tatagac 285  Q
    | |||||    
T  45264761 tctagac 45264767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 5385444 - 5385399
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacc 224  Q
    ||||||||||||||||||||||||||| ||||  ||||||| ||||    
T  5385444 actgaaattaaactcacacacaactgtgaggtcccgggttcgaacc 5385399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 9775068 - 9775116
Alignment:
Q  183 aaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatca 231  Q
    |||||||||||||||| |||||| ||||| ||||||| |||||| ||||    
T  9775068 aaattaaactcacacataactgtgaggttccgggttcgaacccagatca 9775116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 31695293 - 31695397
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaactta 280  Q
    ||||||||||||||||||||| ||| ||||  | ||||| || || ||||||||||||| | ||| ||||||    || || |||||||| ||||||||     
T  31695293 tgaaattaaactcacacacaattgtgaggtcccaggttcgaatccgaatcatgacatccaaccttgcaattttgacatgtgccagttgagctagaacttc 31695392  T
Q  281 tagac 285  Q
    |||||    
T  31695393 tagac 31695397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 12252125 - 12252023
Alignment:
Q  183 aaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaacttata 282  Q
    ||||||||||||||||||||| | |||| ||||||||||||||   ||| |||||||| |||| |||| || |||||||||||||||| ||| |||| ||    
T  12252125 aaattaaactcacacacaactatgaggtctcgggttcaaaccctggtcacgacatccggtcttgcaatctcggtatttgtcagttgagctaggacttcta 12252026  T
Q  283 gac 285  Q
    |||    
T  12252025 gac 12252023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 4464238 - 4464126
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| ||||||||||||||||||||||||||| ||||  | ||||| |||||  |||||||| ||||  ||| ||||||| | |||||||||||||  ||    
T  4464238 aaaccactgaaattaaactcacacacaactgtgaggtcccaggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgtcagttgaacta 4464139  T
Q  274 gaacttatagact 286  Q
    |||||| ||||||    
T  4464138 gaacttctagact 4464126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 28323043 - 28322931
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| ||||||| ||||||||||||||| ||| ||||  ||||||| |||||  |||||||| ||||  ||||||||||| | ||||| |||||||| ||    
T  28323043 aaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgccagttgagcta 28322944  T
Q  274 gaacttatagact 286  Q
    | |||| ||||||    
T  28322943 ggacttctagact 28322931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 2959252 - 2959149
Alignment:
Q  182 gaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaacttat 281  Q
    |||||||||||||||||||||||| |||| |||||||| |||| || ||| || |||||  ||| ||||||| | |||||  ||||||||||| |||| |    
T  2959252 gaaattaaactcacacacaactgtgaggtctcgggttcgaacctaagtcacgatatccggccttgcaatttcggcatttgctagttgagttaggacttct 2959153  T
Q  282 agac 285  Q
    ||||    
T  2959152 agac 2959149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 285
Target Start/End: Complemental strand, 33621605 - 33621494
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| ||||||||||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||    
T  33621605 aaaccactgaaattaaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagcta 33621506  T
Q  274 gaacttatagac 285  Q
    | |||| |||||    
T  33621505 ggacttctagac 33621494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 33704322 - 33704216
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  33704322 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 33704223  T
Q  279 tatagac 285  Q
    | |||||    
T  33704222 tctagac 33704216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 21000803 - 21000691
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| ||||||||||||| ||||||||| ||| ||||  ||||||| ||||||  ||||||| | ||  ||| ||||||| | ||||| |||||||| ||    
T  21000803 aaaccactgaaattaaacccacacacaattgtgaggtcccgggttcgaacccaggtcatgacgtacggccttgcaatttcggcatttgccagttgagcta 21000704  T
Q  274 gaacttatagact 286  Q
    | |||| ||||||    
T  21000703 ggacttctagact 21000691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 173 - 286
Target Start/End: Original strand, 9815814 - 9815925
Alignment:
Q  173 caaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtt 272  Q
    ||||| ||||||||||||||||||  ||||||| || || | |||||||||| |||| |||||||| || ||||||||||   ||||||||||||||| |    
T  9815814 caaaccactgaaattaaactcaca--caactgtgagattccaggttcaaacctaaattatgacatctgaccttacaattttgatatttgtcagttgagct 9815911  T
Q  273 agaacttatagact 286  Q
    ||||||| ||||||    
T  9815912 agaacttctagact 9815925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 285
Target Start/End: Complemental strand, 15782700 - 15782590
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| ||||||||||||||| |||||| ||||||||| |||||||| |||||   ||||||| ||||| ||||||||||| | |||||||| ||||| ||    
T  15782700 aaaccactgaaattaaactcccacaca-ctgtaaggtctcgggttcgaacccgggtcatgacgtccgaccttacaatttcggcatttgtcaattgagcta 15782602  T
Q  274 gaacttatagac 285  Q
    | |||| |||||    
T  15782601 ggacttttagac 15782590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 19048865 - 19048753
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| ||||||| ||||||||||||||| ||| ||||  ||||||| |||||  |||||||| ||||  ||||||||||| | ||||| |||||||| ||    
T  19048865 aaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgccagttgagcta 19048766  T
Q  274 gaacttatagact 286  Q
    | |||| ||||||    
T  19048765 ggacttctagact 19048753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 39831461 - 39831572
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| ||||||||||||||||||||||| ||| ||||  ||| ||| |||||  |||||||| ||||  ||| ||||||| ||||||| |||||||| ||    
T  39831461 aaaccactgaaattaaactcacacacaattgtgaggtcccgg-ttcgaacccggatcatgacgtccggccttgcaatttcggtatttgccagttgagcta 39831559  T
Q  274 gaacttatagact 286  Q
    | |||||||||||    
T  39831560 ggacttatagact 39831572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 45125187 - 45125293
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||| || |||| ||||||| |||  || ||||  ||||||||||| | ||||| |||||||| ||| |||    
T  45125187 actgaaaataaactcacacacaactgtgaggttccgagttcgaacccaagtcacaacgtccggccttacaatttcggcatttgccagttgagctaggact 45125286  T
Q  279 tatagac 285  Q
    | |||||    
T  45125287 tctagac 45125293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 34234636 - 34234530
Alignment:
Q  177 ctactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaa 276  Q
    ||||||||||||||||||||||  ||| | |||| |||||||||||| || ||||  |||||||| ||| ||||||| | ||||| |||||||| ||| |    
T  34234636 ctactgaaattaaactcacaca--actatgaggtctcgggttcaaactcagatcacaacatccgaccttgcaatttcggcatttgccagttgagctagga 34234539  T
Q  277 cttatagac 285  Q
    ||| |||||    
T  34234538 cttctagac 34234530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 44181909 - 44181997
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagtt 267  Q
    ||||||| ||||||||||||||||||| || |  ||| ||| || ||||||||  |||| ||| ||||||||||||| |||||||||||    
T  44181909 actgaaaataaactcacacacaactgtgagatcccggattcgaatccaaatcacaacattcgaccttacaatttcagcatttgtcagtt 44181997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 10639628 - 10639734
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  10639628 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 10639727  T
Q  279 tatagac 285  Q
    | |||||    
T  10639728 tctagac 10639734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 33083576 - 33083682
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  33083576 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 33083675  T
Q  279 tatagac 285  Q
    | |||||    
T  33083676 tctagac 33083682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 285
Target Start/End: Complemental strand, 11459819 - 11459715
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaactta 280  Q
    ||||| ||||| ||||||||||||| ||||  ||||||| |||||   ||||||| ||||| ||| ||||||| | ||||| |||||||| ||| ||||     
T  11459819 tgaaaataaacacacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttc 11459720  T
Q  281 tagac 285  Q
    |||||    
T  11459719 tagac 11459715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 19816328 - 19816220
Alignment:
Q  177 ctactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaa 276  Q
    ||||||||| |||||||| |||||||||  ||||| |||||||||||||   |||  || ||||  ||| ||||||| ||||||| |||||||| ||| |    
T  19816328 ctactgaaaataaactcatacacaactgcgaggttccgggttcaaacccgggtcacaacgtccggccttgcaatttcggtatttgccagttgagctagga 19816229  T
Q  277 cttatagac 285  Q
    ||| |||||    
T  19816228 cttctagac 19816220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 34460475 - 34460369
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| |||||  |||||| |||||   |||  || ||||  ||| ||||||| | |||||||||||||| ||| |||    
T  34460475 actgaaaataaactcacacacaactgtgaggttctgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgtcagttgagctaggact 34460376  T
Q  279 tatagac 285  Q
    | |||||    
T  34460375 tctagac 34460369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 3177564 - 3177601
Alignment:
Q  248 aatttcagtatttgtcagttgagttagaacttatagac 285  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  3177564 aattttagtatttgtcagttgagttagaacttctagac 3177601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 16654461 - 16654369
Alignment:
Q  187 taaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaactt 279  Q
    ||||||||||||||||||| ||||| ||||||| ||| |  |||| | | ||||  ||| ||||||| | |||| ||||||||||||| ||||    
T  16654461 taaactcacacacaactgtgaggttccgggttcgaactcggatcacggcgtccggccttgcaatttcggcatttatcagttgagttaggactt 16654369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 43778492 - 43778584
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    ||||| ||||||||||||||||||| | || |  ||||| ||||||  ||| ||||| ||   || ||||||| |||||||||||||||||||    
T  43778492 tgaaaataaactcacacacaactgtgaagtcttaggttcgaacccaggtcacgacattcggctttgcaatttcggtatttgtcagttgagtta 43778584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 10220489 - 10220600
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| |||||||||||||||||||| |||||| ||||||||| ||| |||||| |||||||| |||   ||||||||||  |  |||| |||||||||||    
T  10220489 aaaccactgaaattaaactcacacaaaactgtgaggtttcggattcgaacccagatcatgacgtcctgccttacaattttggcttttgccagttgagtta 10220588  T
Q  274 gaacttatagac 285  Q
    | |||| |||||    
T  10220589 ggacttctagac 10220600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 25112269 - 25112375
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||| ||||||||||||| ||||  ||||||| ||||||  ||||||| ||||| ||| ||||||| ||||||| |||||||| ||| |||    
T  25112269 actgaaaataaacccacacacaactgtgaggtcccgggttcgaacccaggtcatgacgtccgaccttgcaatttcggtatttgccagttgagctaggact 25112368  T
Q  279 tatagac 285  Q
    | |||||    
T  25112369 tctagac 25112375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 32606352 - 32606458
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    |||||||||||| ||||| | ||||||||||| |||||||| ||||    ||| ||| ||||  ||| ||||||| ||||||||||||||||||||||||    
T  32606352 actgaaattaaattcacataaaactgtaaggtctcgggttcgaacctgggtcacgacgtccggccttgcaatttcggtatttgtcagttgagttagaact 32606451  T
Q  279 tatagac 285  Q
    | |||||    
T  32606452 tctagac 32606458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 46427466 - 46427360
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||||||||||||||||||||||| ||||| ||| ||| || || | ||||||| ||| | ||| ||||||   ||||||||||||||| |||||||    
T  46427466 actgaaattaaactcacacacaactgtgaggttccggattcgaatccgagtcatgacgtccaaccttgcaattttgatatttgtcagttgagctagaact 46427367  T
Q  279 tatagac 285  Q
    | |||||    
T  46427366 tttagac 46427360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 11355929 - 11355822
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||||||||||||||||||||||| || |  ||||||| || ||| ||||| || ||||| ||| ||||||| | |||||| ||||||  |||||||    
T  11355929 actgaaattaaactcacacacaactgtgagatcccgggttcgaatccagatcataacgtccgaccttgcaatttcggcatttgttagttgaactagaact 11355830  T
Q  279 tatagact 286  Q
    | ||||||    
T  11355829 tctagact 11355822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 29484777 - 29484868
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgag 270  Q
    |||||||||||||||||| |||| ||| ||||  |||||||||||||| |||||||| ||||  ||| ||||||| | ||||| ||||||||    
T  29484777 actgaaattaaactcacatacaattgtgaggtcccgggttcaaacccagatcatgacgtccggccttgcaatttcggcatttgccagttgag 29484868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 31770554 - 31770660
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||||||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  31770554 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacatccggccttgcaatttcggcatttgccagttgagctaggact 31770653  T
Q  279 tatagac 285  Q
    | |||||    
T  31770654 tctagac 31770660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 5772836 - 5772887
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaaccc 225  Q
    |||| ||||||||||||||||||||||||||| |||||||| |||| |||||    
T  5772836 aaaccactgaaattaaactcacacacaactgtgaggtttcgagttcgaaccc 5772887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 285
Target Start/End: Complemental strand, 47557892 - 47557781
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| |||||||||||||||||| |||||||| ||||| ||||||| |||||   ||||||| | ||| |||  |||||| | ||||  |||||||||||    
T  47557892 aaaccactgaaattaaactcacatacaactgtgaggttccgggttcgaacccgggtcatgacgtgcgaccttgtaatttcggcatttaccagttgagtta 47557793  T
Q  274 gaacttatagac 285  Q
    | |||| |||||    
T  47557792 ggacttctagac 47557781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 38033835 - 38033729
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||| ||  |||||  ||||  |  ||||| ||||||||||| | ||||| ||||||||||||||||    
T  38033835 actgaaaataaactcacacacaactgtgaggtcccggatttgaacccggatcacaatgtccgaccttacaatttcggcatttgccagttgagttagaact 38033736  T
Q  279 tatagac 285  Q
    | |||||    
T  38033735 tctagac 38033729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 48444174 - 48444280
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    |||||||||||||| |||||||||||| | ||   |||||| |||||| |||| ||| |||  |||||||||||| | |||| ||||||||| ||| |||    
T  48444174 actgaaattaaacttacacacaactgtgaagtacagggttcgaacccagatcacgacgtccagtcttacaatttcggcatttttcagttgagctaggact 48444273  T
Q  279 tatagac 285  Q
    | |||||    
T  48444274 tctagac 48444280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 27229499 - 27229600
Alignment:
Q  179 actgaaattaaa-ctcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaac 277  Q
    |||||||||||| ||||||||||||||| ||||  ||||||| ||||||  ||| ||| ||||  ||| |||||||   |||||||||||||||||| ||    
T  27229499 actgaaattaaaactcacacacaactgtgaggtcccgggttcgaacccaggtcacgacgtccggccttgcaatttcgacatttgtcagttgagttaggac 27229598  T
Q  278 tt 279  Q
    ||    
T  27229599 tt 27229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 5462974 - 5463066
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    ||||||||||||||||||||||||| || | || ||||| || ||  ||||  |||||| |  || |||||| ||||||||||||||||||||    
T  5462974 tgaaattaaactcacacacaactgtgagatctcaggttcgaatccggatcacaacatccaacattgcaattttagtatttgtcagttgagtta 5463066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 25546292 - 25546403
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| ||||||||||||||||||||||||||| ||||  ||| ||| |||||   ||||||| ||||  ||| ||||||| | ||||  |||||||| ||    
T  25546292 aaaccactgaaattaaactcacacacaactgtgaggtcccggattcgaacccgggtcatgacgtccggccttgcaatttcggcatttaccagttgagcta 25546391  T
Q  274 gaacttatagac 285  Q
    | |||| |||||    
T  25546392 ggacttctagac 25546403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 4106844 - 4106738
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||| | ||| |||    
T  4106844 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgggctaggact 4106745  T
Q  279 tatagac 285  Q
    | |||||    
T  4106744 tctagac 4106738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 23358291 - 23358185
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   | | ||| ||||  ||| ||||||| ||||||| |||||||| ||| |||    
T  23358291 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggttacgacgtccggccttgcaatttcggtatttgccagttgagctaggact 23358192  T
Q  279 tatagac 285  Q
    | |||||    
T  23358191 tctagac 23358185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 35577900 - 35577998
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaactt 279  Q
    |||||||||||| |||||||| ||| | || |||||||| ||| |   ||| |||||||||||||| ||||| || |||||  |||||||||| |||||    
T  35577900 tgaaattaaacttacacacaattgtgaagtctcgggttcgaactcgggtcacgacatccgatcttaaaattttagcatttgctagttgagttaaaactt 35577998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 4107415 - 4107322
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtt 272  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   || |||| ||||  ||| ||||||| | ||||| ||||||||||    
T  4107415 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcgtgacgtccggccttgcaatttcggcatttgccagttgagtt 4107322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 28110955 - 28111047
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    ||||||||| |||||| |||| | | | |||||||||||||| | |  ||| ||| ||||||||| |||||||   |||||||||||||||||    
T  28110955 tgaaattaatctcacaaacaaatatgaagtttcgggttcaaatctaggtcacgacgtccgatcttgcaatttcgacatttgtcagttgagtta 28111047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 31288241 - 31288305
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatc 238  Q
    |||| |||||||||||||| |||||||||||| || || | | ||| |||||| |||||||||||    
T  31288241 aaaccactgaaattaaacttacacacaactgtgagattccagattcgaacccagatcatgacatc 31288305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 48146849 - 48146761
Alignment:
Q  189 aactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaac 277  Q
    ||||||||||||||||| ||||  ||||||| |||||   ||| |||||| || ||| ||||||| | |||| ||||||||| ||||||    
T  48146849 aactcacacacaactgtgaggtcccgggttcgaacccgggtcacgacatctgaccttgcaatttctgcatttttcagttgagctagaac 48146761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 285
Target Start/End: Complemental strand, 49783818 - 49783707
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| |||||||||||| ||||| |||||||| ||||| ||||||| ||||| ||||||||| | ||| ||| |||||||   ||||| || ||||||||    
T  49783818 aaaccactgaaattaaattcacatacaactgtgaggttccgggttcgaacccgaatcatgacgttcgaccttgcaatttcgacatttgccaattgagtta 49783719  T
Q  274 gaacttatagac 285  Q
    | ||||||||||    
T  49783718 ggacttatagac 49783707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 29994400 - 29994512
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| ||||||||||||||||||||||| ||| |||| |||||||| |||||  |||||||| || |  ||| ||||||| | ||||| |||||||| ||    
T  29994400 aaaccactgaaattaaactcacacacaattgtgaggtctcgggttcgaacccggatcatgacgtctggccttgcaatttcggcatttgccagttgagcta 29994499  T
Q  274 gaacttatagact 286  Q
    | |||| ||||||    
T  29994500 ggacttctagact 29994512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 41808308 - 41808202
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||| ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  41808308 actgaaaataaactcacacacaactgtgaggttccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 41808209  T
Q  279 tatagac 285  Q
    | |||||    
T  41808208 tctagac 41808202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 273
Target Start/End: Complemental strand, 7275792 - 7275693
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| |||||||||||||||| |||||||||| | ||| ||||||| || || | |||| || ||||| |||||||||||   ||||| |||||||||||    
T  7275792 aaaccactgaaattaaactcatacacaactgtgaagttccgggttcgaatccgagtcataacgtccgaccttacaatttcgacatttgccagttgagtta 7275693  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 32007180 - 32007073
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  32007180 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 32007081  T
Q  279 tatagact 286  Q
    | ||||||    
T  32007080 tctagact 32007073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 39284392 - 39284305
Alignment:
Q  183 aaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgag 270  Q
    |||||||||||||| |||||||| |||| |  ||||| ||||| ||||| ||| ||||| ||||||||||||  ||| ||||||||||    
T  39284392 aaattaaactcacatacaactgtgaggtcttaggttcgaacccgaatcacgacgtccgaccttacaatttcaacattcgtcagttgag 39284305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 45813033 - 45813139
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||| ||  ||||| ||| ||||||| | |||||||||||||| ||| |||    
T  45813033 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgatgtccgaccttgcaatttcggcatttgtcagttgagctaggact 45813132  T
Q  279 tatagac 285  Q
    | |||||    
T  45813133 tctagac 45813139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 5055810 - 5055917
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| ||| |||| ||| |||    
T  5055810 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagctgagctaggact 5055909  T
Q  279 tatagact 286  Q
    | ||||||    
T  5055910 tctagact 5055917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 26264560 - 26264598
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttc 219  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  26264560 tgaaattaaactcacacacaactgtgaggtttcaggttc 26264598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 3716477 - 3716381
Alignment:
Q  170 tgacaaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagtt 267  Q
    |||||| | ||| ||| ||||||||||||||||||| |||| || ||||| ||| | | ||||||  | ||| ||||||||||| |||||||||||||    
T  3716477 tgacaatccactaaaaataaactcacacacaactgtgaggtctcaggttcgaactcgagtcatgatgttcga-cttacaatttcggtatttgtcagtt 3716381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 288
Target Start/End: Complemental strand, 28455980 - 28455871
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   |||  || ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  28455980 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggact 28455881  T
Q  279 tatagactat 288  Q
    | ||||||||    
T  28455880 tctagactat 28455871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 13109876 - 13109844
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtt 211  Q
    ||||||||||||||||||||||||||| |||||    
T  13109876 actgaaattaaactcacacacaactgtgaggtt 13109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 13183198 - 13183230
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtt 211  Q
    |||||||||||||||||| ||||||||||||||    
T  13183198 actgaaattaaactcacatacaactgtaaggtt 13183230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 114363 - 114251
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| ||||||| ||||||||||||||| ||| ||||  ||||||| |||||  |||||||| ||||  ||||||||||| | ||||| |||||||| ||    
T  114363 aaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgccagttgagcta 114264  T
Q  274 gaacttatagact 286  Q
    | |||| ||||||    
T  114263 ggacttctagact 114251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 9576985 - 9577089
Alignment:
Q  181 tgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaactta 280  Q
    |||||||||||||||| |||||||| |||||  |||||| ||||||  ||||||| || |  ||| ||||||||| ||||| |||||||| ||| ||||     
T  9576985 tgaaattaaactcacatacaactgtgaggttctgggttcgaacccaggtcatgacgtctggccttgcaatttcagcatttgccagttgagctaggacttc 9577084  T
Q  281 tagac 285  Q
    |||||    
T  9577085 tagac 9577089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 17984768 - 17984838
Alignment:
Q  183 aaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttc 253  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||| | ||| ||| ||| ||||| |||||||    
T  17984768 aaattaaactcacacacaactgtgaggttccgggttcgaacccgagtcaggacgtccaatcttgcaatttc 17984838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 35317719 - 35317825
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| | ||||  |||| || ||||| ||| ||||||| | ||||| |||||||| ||| |||    
T  35317719 actgaaaataaactcacacacaactgtgaggtcccgggttcgaccccaggtcataacgtccgaccttgcaatttcggcatttgccagttgagctaggact 35317818  T
Q  279 tatagac 285  Q
    | |||||    
T  35317819 tctagac 35317825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 279
Target Start/End: Original strand, 28591367 - 28591472
Alignment:
Q  174 aaactactgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagtta 273  Q
    |||| ||||| |||||||||| |||||||||| ||||||| ||||  ||||| | |||  || ||||  ||| ||||||||||||||| ||||| |||||    
T  28591367 aaaccactgacattaaactcatacacaactgtgaggtttcaggtttgaacccgagtcactacgtccggccttgcaatttcagtatttgccagtttagtta 28591466  T
Q  274 gaactt 279  Q
    | ||||    
T  28591467 ggactt 28591472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 1191562 - 1191668
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||||||||||||||||||| ||| ||||  ||||||| |||||  |||| ||| ||||  ||| |||||||   ||||| |||||||| ||| |||    
T  1191562 actgaaattaaactcacacacaattgtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcgtcatttgccagttgagctaggact 1191661  T
Q  279 tatagac 285  Q
    | |||||    
T  1191662 tctagac 1191668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 23262650 - 23262618
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtt 211  Q
    ||||||| |||||||||||||||||||||||||    
T  23262650 actgaaaataaactcacacacaactgtaaggtt 23262618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 8965 - 9072
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||||||||||||||||||||||| ||||    ||||| ||||| |||||| || |||   ||||||||||| | ||||  |||||||| |||||||    
T  8965 actgaaattaaactcacacacaactgtgaggtcctaggttcgaacccgaatcataacgtcccgccttacaatttcggcatttaccagttgagctagaact 9064  T
Q  279 tatagact 286  Q
    | ||||||    
T  9065 tctagact 9072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 884 - 990
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   ||||||| ||||  ||| ||||||| | ||||| |||||||| ||| |||    
T  884 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 983  T
Q  279 tatagac 285  Q
    | |||||    
T  984 tctagac 990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 13973 - 14079
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||  ||||  || ||||  ||| ||||||| ||||||| |||||||| ||| |||    
T  13973 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacaacgtccggccttgcaatttcggtatttgccagttgagctaggact 14072  T
Q  279 tatagac 285  Q
    | |||||    
T  14073 tctagac 14079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 19653 - 19759
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||  ||||  || ||||  ||| ||||||| ||||||| |||||||| ||| |||    
T  19653 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacaacgtccggccttgcaatttcggtatttgccagttgagctaggact 19752  T
Q  279 tatagac 285  Q
    | |||||    
T  19753 tctagac 19759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 22269 - 22178
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgag 270  Q
    ||||||||||||||||||| ||||||| ||||  |||| || |||||   ||| ||| ||||  ||||||||||| | ||||||||||||||    
T  22269 actgaaattaaactcacacgcaactgtgaggtcccgggctcgaacccgggtcacgacgtccggccttacaatttcggcatttgtcagttgag 22178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 56587 - 56480
Alignment:
Q  179 actgaaattaaactcacacacaactgtaaggtttcgggttcaaacccaaatcatgacatccgatcttacaatttcagtatttgtcagttgagttagaact 278  Q
    ||||||| ||||||||||||||||||| ||||  ||||||| |||||   |||  || ||||| ||| ||||||| | ||||| |||||||| ||| |||    
T  56587 actgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccgaccttgcaatttcggcatttgccagttgagctaggact 56488  T
Q  279 tatagact 286  Q
    | ||||||    
T  56487 tctagact 56480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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