View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5468_low_10 (Length: 393)

Name: NF5468_low_10
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5468_low_10
NF5468_low_10
[»] chr8 (5 HSPs)
chr8 (18-226)||(4638622-4638830)
chr8 (256-368)||(40504859-40504971)
chr8 (169-226)||(32574513-32574570)
chr8 (170-229)||(6580385-6580443)
chr8 (170-226)||(32448452-32448508)
[»] chr6 (3 HSPs)
chr6 (169-227)||(1619825-1619883)
chr6 (170-226)||(22822669-22822724)
chr6 (169-231)||(18990045-18990107)
[»] chr7 (2 HSPs)
chr7 (170-218)||(12936018-12936066)
chr7 (169-217)||(49018479-49018527)
[»] chr4 (1 HSPs)
chr4 (170-225)||(1975516-1975572)
[»] chr3 (1 HSPs)
chr3 (194-226)||(23059548-23059580)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 7e-62; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 4638622 - 4638830
Alignment:
Q  18 aaagggtaccggactcaagtgatgaaagacatgaatgaggtagtgggagggaatgaactaaatgaaggagtgggagtagagaaattgaaatggcacaaca 117  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  4638622 aaagggaaccggactcaagtgatgaaagacatgaatgaggtagtgggagggaatgaacgaaatgaagtagtgggagtagagaaattgaaatggcacaaca 4638721  T
Q  118 acacacnnnnnnnnnnnnngggaaaagagagcattttctaatttacctaaa------tataagggcaaaattgtaaaaaactgggacaaaaattgtccta 211  Q
    || ||              ||| ||||||||||||||||||||||||||||      |||||||||||||||||||||||| ||||||||||||||||||    
T  4638722 actca------tatatataggggaaagagagcattttctaatttacctaaatacccctataagggcaaaattgtaaaaaacagggacaaaaattgtccta 4638815  T
Q  212 tatagtttagtagat 226  Q
    |||||||||||||||    
T  4638816 tatagtttagtagat 4638830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 256 - 368
Target Start/End: Original strand, 40504859 - 40504971
Alignment:
Q  256 aacaaaggtaaaatataaatggtgaccaaattaattagtgnnnnnnntttgaaactgtttttgtacttgtgattgtttcatgaactatgacgataacacg 355  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40504859 aacaaaggtaaaatataaatggtgaccaaattaattagtgaaaaacatttgaaactgtttttgtacttgtgattgattcatgaactatgacgataacacg 40504958  T
Q  356 atggtttacaata 368  Q
    |||||||||||||    
T  40504959 atggtttacaata 40504971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 32574513 - 32574570
Alignment:
Q  169 tataagggcaaaattgtaaaaaactgggacaaaaattgtcctatatagtttagtagat 226  Q
    |||||||||||||| ||||||||   |||||| |||||||||||||||||||||||||    
T  32574513 tataagggcaaaatggtaaaaaaaatggacaagaattgtcctatatagtttagtagat 32574570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 6580385 - 6580443
Alignment:
Q  170 ataagggcaaaattgtaaaaaactgggacaaaaattgtcctatatagtttagtagataga 229  Q
    ||||||||||||| ||||||||  |||||||| |||||||||||||||  ||||||||||    
T  6580385 ataagggcaaaatggtaaaaaaa-gggacaaagattgtcctatatagtaaagtagataga 6580443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 32448452 - 32448508
Alignment:
Q  170 ataagggcaaaattgtaaaaaactgggacaaaaattgtcctatatagtttagtagat 226  Q
    ||||||||||||| || |||||  |||||||| ||||||||| ||||| ||||||||    
T  32448452 ataagggcaaaatggtcaaaaaaagggacaaagattgtcctacatagtatagtagat 32448508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 1619825 - 1619883
Alignment:
Q  169 tataagggcaaaattgtaaaaaactgggacaaaaattgtcctatatagtttagtagata 227  Q
    |||||||||||||| ||||||||   |||||| ||||||||||||||||||||||||||    
T  1619825 tataagggcaaaatggtaaaaaaaatggacaagaattgtcctatatagtttagtagata 1619883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 22822669 - 22822724
Alignment:
Q  170 ataagggcaaaattgtaaaaaactgggacaaaaattgtcctatatagtttagtagat 226  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||    
T  22822669 ataagggcaaaatggtaaaaaaatgg-acaaaaattgtcctatatagtatagtagat 22822724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 18990045 - 18990107
Alignment:
Q  169 tataagggcaaaattgtaaaaaactgggacaaaaattgtcctatatagtttagtagatagatt 231  Q
    |||||||||||||  ||||||||   |||||   |||||||||||||||||||||||||||||    
T  18990045 tataagggcaaaaaagtaaaaaaaatggacattgattgtcctatatagtttagtagatagatt 18990107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 12936066 - 12936018
Alignment:
Q  170 ataagggcaaaattgtaaaaaactgggacaaaaattgtcctatatagtt 218  Q
    ||||||||||||| || |||||  |||||||| ||||||||||||||||    
T  12936066 ataagggcaaaatggtcaaaaaaagggacaaagattgtcctatatagtt 12936018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 49018527 - 49018479
Alignment:
Q  169 tataagggcaaaattgtaaaaaactgggacaaaaattgtcctatatagt 217  Q
    |||||||||||||| || |||||  |||||||| |||||||||||||||    
T  49018527 tataagggcaaaatggtcaaaaaaagggacaaagattgtcctatatagt 49018479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 1975516 - 1975572
Alignment:
Q  170 ataagggcaaaattgtaaaaaactg-ggacaaaaattgtcctatatagtttagtaga 225  Q
    ||||||||||||| ||||||||    |||||| ||||||||||||||||||||||||    
T  1975516 ataagggcaaaatagtaaaaaaaaatggacaagaattgtcctatatagtttagtaga 1975572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 23059580 - 23059548
Alignment:
Q  194 gggacaaaaattgtcctatatagtttagtagat 226  Q
    ||||||| |||||||||||||||||||||||||    
T  23059580 gggacaagaattgtcctatatagtttagtagat 23059548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University