View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468_low_11 (Length: 389)
Name: NF5468_low_11
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 12843709 - 12843342
Alignment:
| Q |
1 |
atgtaattgtgaggaattggcttgacttcgaagtggatcagattgtacaagttggaaggagcaattggaatgcagagaatctttatgaagatcaaattgc |
100 |
Q |
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| T |
12843709 |
atgtaattgtgaggaattggcttgatttcgaagtggatcagagtgtacaagttggaaggagcaattggaatgcagagaatctttatgaagatcaaattgc |
12843610 |
T |
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| Q |
101 |
ttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaa |
200 |
Q |
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| T |
12843609 |
ttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaa |
12843510 |
T |
|
| Q |
201 |
gattcaagattatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctataga |
300 |
Q |
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| T |
12843509 |
gattcaagattatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctataga |
12843410 |
T |
|
| Q |
301 |
ggtagaaatagaatcatatagtgtttgatattagtcttgttgagtattgcacttattttcttcgacat |
368 |
Q |
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| T |
12843409 |
ggtagaaatagaatcatatagtgtttgatattagtcttgttgagtattgcacttattttgtttgacat |
12843342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 12861776 - 12862057
Alignment:
| Q |
5 |
aattgtgaggaattggcttgacttcgaagtggatcagattgtacaagttggaaggagcaattggaatgcagagaatctttatgaagatcaaattgcttat |
104 |
Q |
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| T |
12861776 |
aattgtgaggaaatgtcttggtttcaaagtggatcagagtattgaagttggtaggagtaattggaatcaagagaatctttatgcacatcaagttgcttat |
12861875 |
T |
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| Q |
105 |
gcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagatt |
204 |
Q |
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| T |
12861876 |
gcgtccattgatgcttattttgcgtttcttatcggaatttgtttccaagcttggaggtacccttaagatcgattttactttctaaatttcaatcaagatt |
12861975 |
T |
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| Q |
205 |
caagattatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtta |
286 |
Q |
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| T |
12861976 |
caagattatagtgttaatgtctactgttaagatcgattaatcactcttatgttcgtaactcattttagagattatagtgtta |
12862057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 13125837 - 13125763
Alignment:
| Q |
211 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt |
285 |
Q |
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| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgtt |
13125763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 13125587 - 13125539
Alignment:
| Q |
309 |
tagaatcatatagtgtttgatattagtcttgttgagtattgcacttatt |
357 |
Q |
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| T |
13125587 |
tagaataatacagtgtttgattttagtgttgttgagtattgcacttatt |
13125539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 13125629 - 13125589
Alignment:
| Q |
189 |
aatttcaatcaagattcaagattatagtgttaatgtctact |
229 |
Q |
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| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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