View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468_low_13 (Length: 356)
Name: NF5468_low_13
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 11913196 - 11913545
Alignment:
| Q |
10 |
attattctgtaagatatgcgcgtagacaaaattgatttctcaaaatgaaacgaacacaaacaaccataaagaaccaatataagttggccttgtatatgac |
109 |
Q |
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| T |
11913196 |
attattctgtaagatatgcacgtaggcaaaattgatttctcaaaatgaaacgaacacaaacaaccataaagaaccaatataagttggccttgtatatgat |
11913295 |
T |
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| Q |
110 |
taaattaacagaaaatcaagaca----ttacgttgttgcttgaatggaaggagtttgttttatcaaacaaattcttgtcaatttatttcaaaatgtatta |
205 |
Q |
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| T |
11913296 |
taaatgaacagaaaatcaagacacaatttacgttgttgcttgaatggaaggagtttgtttgatcaaacaaattcttgtcaatttatttcaaaatgtatta |
11913395 |
T |
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| Q |
206 |
caacaaccataatgaaaattcaattaagagattataagtagttcaccatgcaattaaatattgcaaacaagggaaatgacacaaatagttcctatgaatt |
305 |
Q |
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| T |
11913396 |
caacaaccataatgaaaatgcaattaagagattataagtagttcaccatgcaatt-aatattgcaaacaagggaaatgacacaaatagttcctatgaatt |
11913494 |
T |
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| Q |
306 |
tcttatttctgtttgagactactatattagagatctcttttcgattattat |
356 |
Q |
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| T |
11913495 |
tcttatttctgtttgagactactatattagagatcacttttcgattattat |
11913545 |
T |
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