View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468_low_15 (Length: 338)
Name: NF5468_low_15
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 45830307 - 45829986
Alignment:
| Q |
11 |
gagcacagatatagtttatagtcattggttgactctaagcctctagtcattggttgcatagatatagtttatccaaggaaaaatgtaattcaaaattcag |
110 |
Q |
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| T |
45830307 |
gagcacatatatagtttatagtcattggttgacactaagcctctagtcattggttgcatatatatagtttatctgaggaaaaatgtaattcaaaattcag |
45830208 |
T |
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| Q |
111 |
agtcttttcttgtatgatttattgttgattatattcattcaagtgaaatattttaccagaaattctttatagtcaagaacacagtttccatctatgtcgg |
210 |
Q |
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| T |
45830207 |
agtcttttcttgtatgatttattgttgattatattcattcaagtgaaatattttaccataaattctttatagtcaagaacaccatttccatatatgtcgg |
45830108 |
T |
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| Q |
211 |
cttggacccacgactcctttctcttcctcattcaacccatgaaaatggccaattaaattgagttgcaaagaattgaaataagnnnnnnnnncttataaac |
310 |
Q |
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| T |
45830107 |
cttggacccacaactcctttctcttcctcattcaacccatgagaatggccaattaaattgagctgcaaagaattgaaataag-aaaaaaaacttataaac |
45830009 |
T |
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| Q |
311 |
acatggattttcagataagcatg |
333 |
Q |
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| T |
45830008 |
acgtggattttcagataagcatg |
45829986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 96 - 288
Target Start/End: Original strand, 42557882 - 42558076
Alignment:
| Q |
96 |
taattcaaaattcagagtcttttcttgtatgatttattgttgattatattcattcaagtgaaatattttaccagaaattctttatagtcaagaacacagt |
195 |
Q |
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| T |
42557882 |
taattcaaaattcagagtcttttcttgtattatagattgttgtttatataatttcaagtgaaatactttaccagaaattctttatagtcaagaacaccat |
42557981 |
T |
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| Q |
196 |
ttccatctatgtcggcttggacccacgactcctt--tctcttcctcattcaacccatgaaaatggccaattaaattgagttgcaaagaattgaaa |
288 |
Q |
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| T |
42557982 |
ttccatctatgtcagcttggacccacaactcctttatctcttcctcattcaactcatgagaatgaccaattaaattgagctgtaaagaattgaaa |
42558076 |
T |
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