View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468_low_2 (Length: 492)
Name: NF5468_low_2
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Original strand, 19796838 - 19797304
Alignment:
| Q |
11 |
cacagacatttcttggaaactccttaacgcaattcaacaggtaaccttcaaaatctaaaccctatgtatggtatggaattcatttatcaacccaaacaca |
110 |
Q |
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| T |
19796838 |
cacatacatttcttggaaactccttaacgcaattcagcaggtaaccttcaaaatctaaaccctatgtatggtatggaattcatttatcaacccaaacaca |
19796937 |
T |
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| Q |
111 |
actcaaaaactaggtctcaaattttttgaatcctcttttcaagaaatttcaaattgaatggagttgtaaaaatcatcacaaccatcccttctcaccattt |
210 |
Q |
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| T |
19796938 |
actcaaaaactaggtctcaaattttttgaatcctcttttcaagaaatttcaaattgaatggagttgcaaaaatcatcacaaccatcccttctcaccattt |
19797037 |
T |
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| Q |
211 |
tataatttgacttgtagatgactatggaaaatgcaaatacaaatatctcagtttggtgggacgttggaaattgtcaaattccaacaaactttcacagtat |
310 |
Q |
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| T |
19797038 |
tataatttgacttgtagatgactatggaaaatgcaaatacaaatatctcagtttggtgggacgttggaaattgccaaattccaacaaactttgacagtat |
19797137 |
T |
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| Q |
311 |
tgactgcattgttaataatattcgattggctctcttaaaacccaaccttcgtggcaaactatccatttctgcttatggaaacacaaatctcatcgctagt |
410 |
Q |
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| T |
19797138 |
tgactgcattgttaataatattcgattagctctcttaaaagccaaccttcgtggcaaactatccatttctgcttatggaaacacaaatctcatcgctagt |
19797237 |
T |
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| Q |
411 |
gggcttcaacatgcactctccaccgcaggcatatccccctatgtcacgtccccagtggaggtatttact |
479 |
Q |
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| T |
19797238 |
gggcttcaacatgcactctccaccgcaggc--atccccctatgtcacgtccccagtggaggtatttact |
19797304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 19796426 - 19796483
Alignment:
| Q |
353 |
caaccttcgtggcaaactatccatttctgcttatggaaacacaaatctcatcgctagt |
410 |
Q |
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| T |
19796426 |
caaccttcatggcagactaaccatttctgcttatggaaactccgatctcatccctagt |
19796483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 19796309 - 19796365
Alignment:
| Q |
239 |
aaatgcaaatacaaatatctcagtttggtgggacgttggaaattgtcaaattccaac |
295 |
Q |
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| T |
19796309 |
aaatgcaaatgcaaatatttcagtttggtgggacattgaaacctgtcaatttccaac |
19796365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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