View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468_low_27 (Length: 265)
Name: NF5468_low_27
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 34491685 - 34491846
Alignment:
| Q |
20 |
cttgcttaaaggatttggatccaatttcactctgat-----ttgagaatttccaaaatatgcacttaagttgtaatcatggaatagttatatattttaac |
114 |
Q |
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| T |
34491685 |
cttgcttaaaggatttggatccaatttcactctgatcatgtttgagaatttccaaaatatgtacttaagttgtaatcatggaatagttatatattttaac |
34491784 |
T |
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| Q |
115 |
gtttgcaaccttattatattttgttggttggtggagt-gtctcgtcgtttcactctataccta |
176 |
Q |
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| T |
34491785 |
gtttgcaaccttaccatattttgttggtt-gtggagtggtctcatcgtctcactctataccta |
34491846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 27631597 - 27631657
Alignment:
| Q |
124 |
cttattatattttgttggttggtggagt-gtctcgtcgtttcactctatacctatagtggt |
183 |
Q |
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| T |
27631597 |
cttattatattttgttggttggtggagtggtctcatcgtttcactctatacctatagtggt |
27631657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 34514917 - 34514977
Alignment:
| Q |
124 |
cttattatattttgttggttggtggagt-gtctcgtcgtttcactctatacctatagtggt |
183 |
Q |
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| T |
34514917 |
cttattatattttgttggttggtggagtggtctcatcgtttcactctatacctatagtggt |
34514977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 34514842 - 34514912
Alignment:
| Q |
20 |
cttgcttaaaggatttggatccaatttcactctga-----tttgagaatttccaaaatatgcacttaagtt |
85 |
Q |
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| T |
34514842 |
cttgcttaaaggatttagatccaatttcactcagatcctgtttgagaatttccaaaatatgtacttaagtt |
34514912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 27631522 - 27631592
Alignment:
| Q |
20 |
cttgcttaaaggatttggatccaatttcactctga-----tttgagaatttccaaaatatgcacttaagtt |
85 |
Q |
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|||||||||||||||| |||||||||||||| || ||||||||||||||||||||| ||||||||| |
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| T |
27631522 |
cttgcttaaaggatttaaatccaatttcactcagatcctgtttgagaatttccaaaatatgtacttaagtt |
27631592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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