View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468_low_3 (Length: 487)
Name: NF5468_low_3
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 16859869 - 16860171
Alignment:
| Q |
19 |
ctacttgtgtatgatttcatggctaaaggaagcttagaccggtagttttttgatgaggcaaaatccaacttttctatcacattgtattttgtctgagtgt |
118 |
Q |
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| T |
16859869 |
ctacttgtgtatgatttcatggctaaaggaagcttagactggtagttttttgatgaggcaaaatccaacttatctatcacattgtattttgtctgagtgt |
16859968 |
T |
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| Q |
119 |
gtggatgagaatggaggctcgtaggttgtgattctctctggagccatgaaacgacagcgcatgctgctaggttgatggaagaggtagagggatttgagga |
218 |
Q |
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| T |
16859969 |
gtggatgagaatggaggctcgtaggttgtgatactctctggagccatgaaacgacagcgcatgctgctaggttgatggaagaggtagagggatttgagga |
16860068 |
T |
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| Q |
219 |
gtgcgtgttaatgcaggtctcggtaaaatgattgaccatctctctttacacattcttca----acatcatgcgatttatatctatc-tacttcagatttg |
313 |
Q |
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| T |
16860069 |
gtgcgtgttaatgcaggtctcggtaaaatgattgatcatctctcttt--acattcttcaacgtacatcatgcgatttatatctatcttatttcagatttg |
16860166 |
T |
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| Q |
314 |
agttg |
318 |
Q |
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| T |
16860167 |
agttg |
16860171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 16861786 - 16861848
Alignment:
| Q |
336 |
cattttgcattggaggatttgtactcatccatttgttcatgttattagtattatacaaattgt |
398 |
Q |
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| T |
16861786 |
cattttgcattggaggatttgtactcatccatttgttcatgtcattagtattatacaaattgt |
16861848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 15627535 - 15627498
Alignment:
| Q |
19 |
ctacttgtgtatgatttcatggctaaaggaagcttaga |
56 |
Q |
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| T |
15627535 |
ctacttgtgtatgacttcatggctaatggaagcttaga |
15627498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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