View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5468_low_30 (Length: 258)
Name: NF5468_low_30
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_low_30 |
 | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 7938349 - 7938576
Alignment:
| Q |
14 |
catcatccatggacgaatattctcaagagttgtacttggtgataaattttagtattcaatcctccaagatatcaagcaattttttgcttttccatttctt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7938349 |
catcatccatggacgaatattctcaagagatgtaataggtgataaagtttagtattcaaccctccaagatatcaagcaattttttgcttttccatttctt |
7938448 |
T |
|
| Q |
114 |
gaatatttcatttcaacatcaacatctcaaattctttagtatatattcttctattaacaaagtcttgagagggtaaagaacttacgggttaaattctaac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
7938449 |
gaatatttcatttcaacatcaacatctcaaattctttag--tatattcttctattaacaaagtcttgagcgggt-aagaacttacgggttagtttctaac |
7938545 |
T |
|
| Q |
214 |
gcatcttgtcccacatcttgatctttatttt |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
7938546 |
gcatcttgtcccacatcttgatctttatttt |
7938576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 37208942 - 37208859
Alignment:
| Q |
74 |
cctccaagatatcaagcaattttttgcttttccatttcttgaatatttcatttcaacatcaacatctcaaattctttagtatat |
157 |
Q |
| |
|
|||||||| |||| ||||||| |||||| |||| ||||||| |||| ||||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
37208942 |
cctccaaggtatcgagcaattgtttgctcttccttttcttggatatcacatttcatcatcaacttctcaaattctctagtatat |
37208859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 89392 - 89309
Alignment:
| Q |
74 |
cctccaagatatcaagcaattttttgcttttccatttcttgaatatttcatttcaacatcaacatctcaaattctttagtatat |
157 |
Q |
| |
|
|||||||| |||| |||||| |||||| |||| ||||||| |||| ||||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
89392 |
cctccaaggtatcgagcaatcgtttgctcttccttttcttggatatcacatttcatcatcaacttctcaaattctctagtatat |
89309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 45163225 - 45163142
Alignment:
| Q |
74 |
cctccaagatatcaagcaattttttgcttttccatttcttgaatatttcatttcaacatcaacatctcaaattctttagtatat |
157 |
Q |
| |
|
|||||||| |||| |||||| |||||| |||| ||||||| |||| ||||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
45163225 |
cctccaaggtatcgagcaatcgtttgctcttccttttcttggatatcacatttcatcatcaacttctcaaattctctagtatat |
45163142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 2409055 - 2409129
Alignment:
| Q |
83 |
tatcaagcaattttttgcttttccatttcttgaatatttcatttcaacatcaacatctcaaattctttagtatat |
157 |
Q |
| |
|
|||| |||||| |||||| |||| ||||||| |||| ||||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
2409055 |
tatcgagcaatcgtttgctcttccttttcttggatatcacatttcatcatcaacttctcaaattctctagtatat |
2409129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University