View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5468_low_33 (Length: 251)

Name: NF5468_low_33
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5468_low_33
NF5468_low_33
[»] chr5 (2 HSPs)
chr5 (10-251)||(38941622-38941863)
chr5 (10-251)||(38947541-38947782)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 38941863 - 38941622
Alignment:
Q  10 agcaaagggacagacacatggtagatcaagttgaggcagatttattaaccggtggcgccttcggcttcaccggagaagtagtgacatcaggtggggcagc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38941863 agcaaagggacagacacatggtagatcaagttgaggcagatttattaaccggtggcgccttcggcttcaccggagaagtagtgacagcaggtggggcagc 38941764  T
Q  110 aaactcagctttgatctcttggttggtgttgtgctgagcaatggtggatcttgtggctccattggtggatgattgaacttgaaggttgttggtattgggt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  38941763 aaactcagctttgatctcttggttggtgttgtgctgagcaatggtggatcttgtggctccattggtggatgattgagcttcaaggttgttggtattgggt 38941664  T
Q  210 ggagtcaagtcaaatggtttggtgaagatatcagcagcaaat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38941663 ggagtcaagtcaaatggtttggtgaagatatcagcagcaaat 38941622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 38947782 - 38947541
Alignment:
Q  10 agcaaagggacagacacatggtagatcaagttgaggcagatttattaaccggtggcgccttcggcttcaccggagaagtagtgacatcaggtggggcagc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38947782 agcaaagggacagacacatggtagatcaagttgaggcagatttattaaccggtggcgccttcggcttcaccggagaagtagtgacagcaggtggggcagc 38947683  T
Q  110 aaactcagctttgatctcttggttggtgttgtgctgagcaatggtggatcttgtggctccattggtggatgattgaacttgaaggttgttggtattgggt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  38947682 aaactcagctttgatctcttggttggtgttgtgctgagcaatggtggatcttgtggctccattggtggatgattgagcttcaaggttgttggtattgggt 38947583  T
Q  210 ggagtcaagtcaaatggtttggtgaagatatcagcagcaaat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38947582 ggagtcaagtcaaatggtttggtgaagatatcagcagcaaat 38947541  T

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