View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468_low_38 (Length: 235)
Name: NF5468_low_38
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38015921 - 38015706
Alignment:
| Q |
1 |
ctgcacctgcttcgtttagcttaaaaggttggttcattattgtcttaactttaccatgatattaactttcgtttctcaattgttttcatagtagcattta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38015921 |
ctgcacctgcttcgtttagcttaaaaggttggttcattattgtcttaactttaccatgatattaactttcgtttctcaattgttttcatagtagcattta |
38015822 |
T |
|
| Q |
101 |
tcgtttcatagctatgctcattgtctcttatactactaggattcattatgnnnnnnngctcaaaattgtttgaagttcctaaactgtttccatttctctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38015821 |
tcgtttcatagctatgctcattgtctcttatactactaggattcattatgtttctttgctcaaaattgtttgaagttcctaaactgtttccatttctctc |
38015722 |
T |
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| Q |
201 |
ctgctgagtttacttc |
216 |
Q |
| |
|
||||||||||||||| |
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| T |
38015721 |
ttgctgagtttacttc |
38015706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 12348287 - 12348359
Alignment:
| Q |
1 |
ctgcacctgcttcgtttagcttaaaaggttggttcattattgtcttaactttaccatgatattaactttcgttt |
74 |
Q |
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||||| |||||| | |||| | |||||||||||||| || ||||| | |||||||||||||||||||||||||| |
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| T |
12348287 |
ctgcatctgctttgcttagttgaaaaggttggttcactaatgtctca-ctttaccatgatattaactttcgttt |
12348359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 50228451 - 50228374
Alignment:
| Q |
22 |
taaaaggttggttcattattgtcttaactttaccatgatattaactttcgtttctcaattgttttcatagtagcattt |
99 |
Q |
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|||||| |||||||||||||||||| ||| |||||||||||||||||| ||||| |||||| ||||||||| ||||| |
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| T |
50228451 |
taaaagtttggttcattattgtcttcactataccatgatattaacttttatttcttaattgtcttcatagtaacattt |
50228374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 25281998 - 25282070
Alignment:
| Q |
1 |
ctgcacctgcttcgtttagcttaaaaggttggttcattattgtcttaactttaccatgatattaactttcgttt |
74 |
Q |
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||||| |||||| | |||| | |||||||||||||| |||||||| | |||||||||||||||||||||||||| |
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| T |
25281998 |
ctgcatctgctttgcttagttgaaaaggttggttcactattgtctca-ctttaccatgatattaactttcgttt |
25282070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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