View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468_low_4 (Length: 470)
Name: NF5468_low_4
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 33123499 - 33123089
Alignment:
| Q |
13 |
attattcttactaacaatgtctgatttttgggcatcacaggtggggtgggaatagggaacatggttgagaagatggaaaatgaagaatatatggggtttg |
112 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33123499 |
attattcttactaacaatgtctcatttttgggcatcacaggtggggtgggaatagggaatatggttgagaagatggaaaatgaagaatatatggggtttg |
33123400 |
T |
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| Q |
113 |
acaatctctgccaccatggaaaaaa-tatggggtttgacaaaatggtcacctatttgtcattttcatttaagtaaagaaaatatcttt-gttannnnnnn |
210 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33123399 |
acaatctctgccaccatggaaaaaaatatggggtttgacaaaatggtcacctatttgtcattttcatttaagtaaagaaaatatcttttgttattttttt |
33123300 |
T |
|
| Q |
211 |
cctttctaaattttctatatattgttgtattcgttgcggactgtgtaacaatgactggattatattctttgccatcttaaaattgttattatgtgttttt |
310 |
Q |
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| T |
33123299 |
cctttctaaattttctacatattgttgtattcgttgcggattgtgtaacaatgactggattatattctttgccatcttaaaattgttattatg-gttttt |
33123201 |
T |
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| Q |
311 |
gtttggtttgtaaagaattttcactttatcagaagtcaacaaatatttatgaagtttaccgttgatgaccatagtttgaactttgaagtgcaatatatga |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33123200 |
gtttggtttgtaaagaattttcactttatcagaagtcaacaaatatttatgaagtataccgttgatgaccatagtttgaactttgaagtgcaatatatga |
33123101 |
T |
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| Q |
411 |
cattcctagtcc |
422 |
Q |
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|||||||||||| |
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| T |
33123100 |
cattcctagtcc |
33123089 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 7582268 - 7582341
Alignment:
| Q |
46 |
atcacaggtggggtgggaatagggaacatggttgagaagatggaaaatgaagaatatatggggtttgacaatct |
119 |
Q |
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||||||||||| || ||||||| ||| ||| ||| ||||||||||||| | || |||||||||||||| ||||| |
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| T |
7582268 |
atcacaggtggagtaggaatagagaaaatgattgtgaagatggaaaatcatgagtatatggggtttgaaaatct |
7582341 |
T |
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