View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5468_low_5 (Length: 448)

Name: NF5468_low_5
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5468_low_5
NF5468_low_5
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-328)||(12534-12860)
scaffold0026 (339-434)||(12437-12543)
[»] scaffold0634 (1 HSPs)
scaffold0634 (1-399)||(2759-3156)
[»] chr2 (18 HSPs)
chr2 (1-431)||(26582868-26583313)
chr2 (21-327)||(23168954-23169261)
chr2 (21-327)||(23580211-23580518)
chr2 (215-400)||(23089594-23089779)
chr2 (100-359)||(23062869-23063127)
chr2 (215-428)||(23101994-23102207)
chr2 (292-392)||(23878325-23878425)
chr2 (288-403)||(21907750-21907865)
chr2 (198-349)||(26884489-26884639)
chr2 (215-360)||(24660876-24661021)
chr2 (297-434)||(5706610-5706759)
chr2 (288-390)||(29281368-29281470)
chr2 (264-371)||(25181501-25181606)
chr2 (339-437)||(23264515-23264613)
chr2 (297-390)||(9957-10050)
chr2 (100-328)||(23264301-23264524)
chr2 (288-360)||(27208322-27208394)
chr2 (288-360)||(27210657-27210729)
[»] chr6 (26 HSPs)
chr6 (1-431)||(29614738-29615183)
chr6 (74-403)||(25396343-25396671)
chr6 (220-398)||(18799754-18799932)
chr6 (215-400)||(21565751-21565936)
chr6 (250-434)||(12167637-12167832)
chr6 (250-434)||(19286546-19286741)
chr6 (250-390)||(19877730-19877870)
chr6 (250-434)||(19883506-19883701)
chr6 (198-400)||(19300308-19300509)
chr6 (250-371)||(19786529-19786650)
chr6 (297-434)||(34640575-34640724)
chr6 (297-434)||(34647249-34647398)
chr6 (223-392)||(19471914-19472082)
chr6 (1-106)||(19786751-19786855)
chr6 (339-434)||(24513370-24513465)
chr6 (1-106)||(12167431-12167535)
chr6 (1-106)||(19877524-19877628)
chr6 (1-106)||(19883300-19883404)
chr6 (32-106)||(19286372-19286444)
chr6 (297-390)||(20008529-20008622)
chr6 (288-434)||(25470290-25470448)
chr6 (310-432)||(21365067-21365200)
chr6 (310-432)||(23969049-23969182)
chr6 (383-434)||(19786455-19786506)
chr6 (383-432)||(19877874-19877923)
chr6 (265-328)||(9186841-9186903)
[»] chr3 (16 HSPs)
chr3 (1-390)||(41455741-41456131)
chr3 (1-392)||(18914201-18914590)
chr3 (288-428)||(55499658-55499798)
chr3 (288-398)||(16802029-16802139)
chr3 (197-379)||(13324381-13324562)
chr3 (298-431)||(24192274-24192418)
chr3 (58-115)||(18136117-18136174)
chr3 (197-328)||(13302844-13302974)
chr3 (197-328)||(13313520-13313650)
chr3 (58-111)||(18129607-18129660)
chr3 (288-390)||(14865216-14865319)
chr3 (384-433)||(10390034-10390083)
chr3 (384-433)||(10415123-10415172)
chr3 (384-433)||(10421793-10421842)
chr3 (333-398)||(12034007-12034072)
chr3 (63-167)||(9533232-9533335)
[»] scaffold0456 (4 HSPs)
scaffold0456 (161-328)||(241-407)
scaffold0456 (161-328)||(7386-7552)
scaffold0456 (350-434)||(409-504)
scaffold0456 (350-434)||(7554-7649)
[»] scaffold0029 (4 HSPs)
scaffold0029 (1-328)||(110951-111284)
scaffold0029 (292-390)||(91783-91881)
scaffold0029 (292-390)||(97509-97607)
scaffold0029 (383-431)||(111330-111378)
[»] chr7 (28 HSPs)
chr7 (125-390)||(13742860-13743121)
chr7 (1-431)||(13123506-13123955)
chr7 (1-381)||(12710496-12710884)
chr7 (215-437)||(16676623-16676845)
chr7 (215-437)||(17650859-17651081)
chr7 (250-434)||(13006706-13006901)
chr7 (121-359)||(46625166-46625403)
chr7 (100-359)||(13678649-13678906)
chr7 (21-106)||(13742719-13742803)
chr7 (288-398)||(11389910-11390020)
chr7 (314-392)||(20311631-20311709)
chr7 (299-434)||(12591230-12591377)
chr7 (265-380)||(11383440-11383554)
chr7 (32-106)||(13006532-13006604)
chr7 (288-390)||(16090457-16090559)
chr7 (288-360)||(14320243-14320315)
chr7 (63-154)||(18607248-18607339)
chr7 (314-403)||(21231554-21231643)
chr7 (63-167)||(147453-147556)
chr7 (310-390)||(2464758-2464838)
chr7 (310-390)||(3858007-3858087)
chr7 (383-432)||(3857953-3858003)
chr7 (63-117)||(16475929-16475983)
chr7 (300-390)||(29181690-29181780)
chr7 (333-381)||(2966383-2966431)
chr7 (383-431)||(12710435-12710483)
chr7 (58-102)||(13318007-13318051)
chr7 (333-381)||(20907038-20907086)
[»] chr4 (16 HSPs)
chr4 (121-434)||(8046420-8046744)
chr4 (314-437)||(15407485-15407608)
chr4 (298-400)||(14486052-14486154)
chr4 (58-115)||(14555881-14555938)
chr4 (209-349)||(11847397-11847537)
chr4 (197-260)||(14485975-14486037)
chr4 (297-434)||(53483022-53483171)
chr4 (1-106)||(8046777-8046881)
chr4 (288-390)||(16147412-16147514)
chr4 (215-327)||(8834185-8834297)
chr4 (264-381)||(27905613-27905729)
chr4 (267-359)||(15244566-15244658)
chr4 (66-167)||(18212523-18212623)
chr4 (217-389)||(13887086-13887258)
chr4 (217-389)||(13887943-13888115)
chr4 (215-359)||(15307415-15307563)
[»] scaffold1773 (2 HSPs)
scaffold1773 (121-390)||(324-592)
scaffold1773 (1-106)||(165-269)
[»] scaffold0247 (1 HSPs)
scaffold0247 (215-434)||(10610-10829)
[»] scaffold0249 (1 HSPs)
scaffold0249 (58-209)||(7517-7667)
[»] scaffold0154 (1 HSPs)
scaffold0154 (210-399)||(30194-30383)
[»] scaffold0117 (1 HSPs)
scaffold0117 (1-431)||(9167-9616)
[»] chr8 (11 HSPs)
chr8 (1-390)||(23865627-23866026)
chr8 (314-437)||(14057148-14057271)
chr8 (314-437)||(25111385-25111508)
chr8 (1-106)||(19902808-19902912)
chr8 (60-115)||(19987990-19988045)
chr8 (100-392)||(18613409-18613697)
chr8 (264-390)||(24321252-24321376)
chr8 (215-384)||(21931018-21931187)
chr8 (383-434)||(17054009-17054060)
chr8 (64-114)||(20005423-20005473)
chr8 (383-431)||(23866030-23866078)
[»] scaffold0053 (2 HSPs)
scaffold0053 (102-359)||(81826-82082)
scaffold0053 (288-390)||(80072-80174)
[»] scaffold0004 (2 HSPs)
scaffold0004 (100-416)||(116052-116366)
scaffold0004 (215-403)||(129204-129393)
[»] scaffold0028 (2 HSPs)
scaffold0028 (75-403)||(65265-65592)
scaffold0028 (121-183)||(1274-1336)
[»] scaffold0461 (2 HSPs)
scaffold0461 (265-437)||(581-752)
scaffold0461 (265-349)||(7605-7688)
[»] chr5 (20 HSPs)
chr5 (124-434)||(23527777-23528099)
chr5 (58-115)||(22232436-22232493)
chr5 (228-392)||(18408521-18408685)
chr5 (310-390)||(19236294-19236374)
chr5 (339-398)||(22439310-22439369)
chr5 (264-371)||(22460506-22460611)
chr5 (264-372)||(34829432-34829539)
chr5 (264-390)||(22467130-22467254)
chr5 (1-106)||(23527643-23527747)
chr5 (272-363)||(20781102-20781192)
chr5 (100-167)||(23112480-23112546)
chr5 (384-434)||(20819639-20819689)
chr5 (384-434)||(20826739-20826789)
chr5 (213-245)||(20819456-20819488)
chr5 (213-245)||(20826556-20826588)
chr5 (310-390)||(28889978-28890058)
chr5 (310-390)||(28896682-28896762)
chr5 (310-390)||(28909930-28910010)
chr5 (310-390)||(28931622-28931702)
chr5 (310-390)||(28946325-28946405)
[»] scaffold0139 (1 HSPs)
scaffold0139 (100-438)||(15521-15856)
[»] scaffold0025 (1 HSPs)
scaffold0025 (298-431)||(14977-15121)
[»] scaffold0138 (1 HSPs)
scaffold0138 (215-359)||(1117-1261)
[»] chr1 (13 HSPs)
chr1 (265-437)||(18712098-18712270)
chr1 (250-390)||(41111214-41111354)
chr1 (58-115)||(20941657-20941714)
chr1 (264-390)||(21710167-21710292)
chr1 (198-349)||(19961472-19961622)
chr1 (215-386)||(22030333-22030504)
chr1 (264-390)||(20851714-20851838)
chr1 (264-390)||(21705625-21705749)
chr1 (1-106)||(41111008-41111112)
chr1 (297-390)||(20858341-20858434)
chr1 (100-328)||(11157328-11157554)
chr1 (63-167)||(20438224-20438327)
chr1 (383-432)||(41111358-41111407)
[»] scaffold0124 (1 HSPs)
scaffold0124 (288-437)||(34861-35010)
[»] scaffold0235 (2 HSPs)
scaffold0235 (265-424)||(15475-15633)
scaffold0235 (288-424)||(23192-23328)
[»] scaffold1061 (1 HSPs)
scaffold1061 (121-328)||(1607-1813)
[»] scaffold0317 (1 HSPs)
scaffold0317 (100-359)||(542-799)
[»] scaffold0310 (1 HSPs)
scaffold0310 (314-431)||(6907-7024)
[»] scaffold0077 (3 HSPs)
scaffold0077 (300-428)||(4153-4281)
scaffold0077 (58-110)||(17972-18024)
scaffold0077 (58-110)||(23605-23657)
[»] scaffold0222 (1 HSPs)
scaffold0222 (228-392)||(16083-16247)
[»] scaffold0085 (1 HSPs)
scaffold0085 (264-390)||(4253-4377)
[»] scaffold0020 (1 HSPs)
scaffold0020 (100-400)||(102489-102787)
[»] scaffold0348 (1 HSPs)
scaffold0348 (58-115)||(1527-1584)
[»] scaffold0001 (3 HSPs)
scaffold0001 (21-106)||(174440-174524)
scaffold0001 (198-349)||(493650-493800)
scaffold0001 (215-359)||(525062-525205)
[»] scaffold0476 (1 HSPs)
scaffold0476 (288-392)||(3871-3975)
[»] scaffold0090 (1 HSPs)
scaffold0090 (241-392)||(17492-17643)
[»] scaffold0261 (1 HSPs)
scaffold0261 (198-363)||(24178-24342)
[»] scaffold0031 (2 HSPs)
scaffold0031 (215-384)||(121200-121369)
scaffold0031 (215-384)||(132077-132246)
[»] scaffold0232 (1 HSPs)
scaffold0232 (215-322)||(19059-19166)
[»] scaffold0034 (1 HSPs)
scaffold0034 (198-381)||(72565-72747)
[»] scaffold0107 (1 HSPs)
scaffold0107 (314-437)||(41113-41236)
[»] scaffold0094 (1 HSPs)
scaffold0094 (223-328)||(51552-51657)
[»] scaffold0483 (1 HSPs)
scaffold0483 (198-349)||(11631-11782)
[»] scaffold0720 (1 HSPs)
scaffold0720 (264-399)||(3831-3966)
[»] scaffold0337 (1 HSPs)
scaffold0337 (63-167)||(9950-10053)
[»] scaffold0453 (1 HSPs)
scaffold0453 (198-327)||(11196-11324)
[»] scaffold0206 (1 HSPs)
scaffold0206 (288-349)||(18060-18121)
[»] scaffold0169 (1 HSPs)
scaffold0169 (215-259)||(6299-6343)
[»] scaffold1427 (1 HSPs)
scaffold1427 (100-167)||(1207-1273)
[»] scaffold0023 (2 HSPs)
scaffold0023 (333-390)||(134867-134924)
scaffold0023 (264-328)||(134820-134882)
[»] scaffold0924 (1 HSPs)
scaffold0924 (383-431)||(1343-1391)
[»] scaffold0335 (1 HSPs)
scaffold0335 (215-259)||(3328-3372)
[»] scaffold0006 (1 HSPs)
scaffold0006 (383-431)||(49597-49645)


Alignment Details
Target: scaffold0026 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 12860 - 12534
Alignment:
Q  1 tctacatacaacttaactacacatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacatac 100  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  12860 tctacatacaactcaactacacatatatctcatatgacttactactccgagagttctaacaatccagaacatacacaattaattataattatgcgcatac 12761  T
Q  101 atcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagt 200  Q
    |||||||||||||||||  ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  12760 atcaatttcattcaatag-ttatacattcacttgatttcttactcaatcatctccaaaattcactaacatcaaccaattcgatcaccggcttgttctagt 12662  T
Q  201 aggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggc 300  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  12661 aggattctgatacctatacaagggatatacaagttaaaggaaatattttagaatgctcaagaagtcccctcgtgcacgaagcaaaagttcagaaagaggc 12562  T
Q  301 tgactaaggctcacttcgcttaagcgac 328  Q
    ||||||||||||||||||||||||||||    
T  12561 tgactaaggctcacttcgcttaagcgac 12534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 339 - 434
Target Start/End: Complemental strand, 12543 - 12437
Alignment:
Q  339 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct-----------tgagcgaacttctaacagaatcaaaacggtttttcgc 427  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||||||||           ||||||||||||| |||||||||||| ||||||||||    
T  12543 cttaagcgaccggcttacagtaggtctgggttcagctcgcttacggttcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgc 12444  T
Q  428 tcacagg 434  Q
    |||||||    
T  12443 tcacagg 12437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 2759 - 3156
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    ||||||||||||| |||||  |||||| |||||||||||||||||||||| || | | |||||||||||||||| ||||||| |||||||||||| ||||    
T  2759 tctacatacaactcaactaatacatatgtttcatatgacttactactccgcaact-caaacaatccagaacatagacaattatttataattatgcgcata 2857  T
Q  100 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 199  Q
    |||||| |||||||||||| |||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||    
T  2858 catcaaattcattcaataa-ttatatattcacatgatttcaaactcaatcatctccaatattcactaacatcaaccaattcgatcaccggcttgttctag 2956  T
Q  200 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagagg 299  Q
    | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  2957 tgggattctggtacctatacaagggttatacaagttaaaggaaatattttagaatgctcaagaagtcccctcgtgcacgaagcaaaagttcagaaagagg 3056  T
Q  300 ctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaac 399  Q
    ||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||  ||||||| |  ||||||||||||||||    
T  3057 ctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggtttcgctcgctcacagttcgcttgagcgaac 3156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 26582868 - 26583313
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    |||||||||||||||||||  |||||| ||| |||||||||||||||||| || | | |||||||||||||||||||||||| |||||||||||| ||||    
T  26582868 tctacatacaacttaactattacatatgttttatatgacttactactccgcaact-caaacaatccagaacatacacaattatttataattatgcgcata 26582966  T
Q  100 catcaatttcattcaataaattat----atattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgtt 195  Q
    |||||||  ||||| | |  ||||    ||||||||| ||||||||||||||||||||| || ||| ||||||| ||| ||||||||||||| ||| |||    
T  26582967 catcaatcacattccacatgttatgtatatattcactcgatttcatactcaatcatctccaacatttactaacaccaatcaattcgatcaccggctagtt 26583066  T
Q  196 ctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaa 295  Q
    ||| ||||| || | |||||| || |||||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| |||| ||     
T  26583067 ctaataggagtcggttacctacaccagggttatactagttaaaagaaatattatagaatgctcaagaagtcccctcctgcacgaaacaaaagttcagaag 26583166  T
Q  296 gaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------aggg 384  Q
     |||||||||||| || |||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||| ||||||||           | ||    
T  26583167 aaggctgactaagacttacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggttcagctcgcttacgggtcgctcacgg 26583266  T
Q  385 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 431  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  26583267 ttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 26583313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 23169261 - 23168954
Alignment:
Q  21 acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaat 120  Q
    ||||||||||||||| ||||||||||||| || | | |||||||||| ||||||||||| | |||||||||||| ||||||||| |  ||||| | |  |    
T  23169261 acatatatttcatataacttactactccgcaact-caaacaatccagcacatacacaatcatttataattatgcgcatacatcattcacattccacatgt 23169163  T
Q  121 tatat--attcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctata 218  Q
    |||||  |||||| ||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||  |||||||||||||| || |||||||||    
T  23169162 tatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaatgcgatcaccagagtgttctagtaggatcctaatacctata 23169063  T
Q  219 caagggttatacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttc 317  Q
    ||||||||||||||||| || ||||||||||||||| | ||| |  ||||||| || |||||| | ||  |||| |||||||||||||||| ||||  ||    
T  23169062 caagggttatacaagttgaaagaaacattttagaatacccaaaagggtcccctagtacacgaaac-aattttcagaaagaggctgactaagcctcagctc 23168964  T
Q  318 gcttaagcga 327  Q
    ||||||||||    
T  23168963 gcttaagcga 23168954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 23580518 - 23580211
Alignment:
Q  21 acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaat 120  Q
    ||||||||||||||| ||||||||||||| || | | |||||||||| ||||||||||| | |||||||||||| ||||||||| |  ||||| | |  |    
T  23580518 acatatatttcatataacttactactccgcaact-caaacaatccagcacatacacaatcatttataattatgcgcatacatcattcacattccacatgt 23580420  T
Q  121 tatat--attcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctata 218  Q
    |||||  |||||| ||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||  |||||||||||||| || |||||||||    
T  23580419 tatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaatgcgatcaccagagtgttctagtaggatcctaatacctata 23580320  T
Q  219 caagggttatacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttc 317  Q
    ||||||||||||||||| || ||||||||||||||| | ||| |  ||||||| || |||||| | ||  |||| |||||||||||||||| ||||  ||    
T  23580319 caagggttatacaagttgaaagaaacattttagaatacccaaaagggtcccctagtacacgaaac-aattttcagaaagaggctgactaagcctcagctc 23580221  T
Q  318 gcttaagcga 327  Q
    ||||||||||    
T  23580220 gcttaagcga 23580211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 215 - 400
Target Start/End: Complemental strand, 23089779 - 23089594
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaa-gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| |  ||| |||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  23089779 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaggggtctcctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 23089681  T
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaact 400  Q
    |||||||||||||||    ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  23089680 cttcgcttaagcgacgtccagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgagcgaact 23089594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 100 - 359
Target Start/End: Original strand, 23062869 - 23063127
Alignment:
Q  100 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttct-a 198  Q
    |||||| ||||||||| | | ||||| |||||| | ||||||||||||||||||| ||| ||||||||  ||||| |||||||| ||||   |||| | |    
T  23062869 catcaagttcattcaacatagtatatgttcactaggtttcatactcaatcatctccaaa-ttcactaaactcaactaattcgattaccaaagtgttttca 23062967  T
Q  199 gtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaaga 297  Q
    ||||||||| | |   |||| |||||||||||||||| || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  |||||||||     
T  23062968 gtaggattcag-tgtatatataagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagt 23063065  T
Q  298 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 359  Q
    ||||||||||||   |||||||||||||||| | | |||| |||||||||||||||||||||    
T  23063066 ggctgactaaggtcaacttcgcttaagcgacggctggttcgcttaagcgaccggcttacaga 23063127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 215 - 428
Target Start/End: Complemental strand, 23102207 - 23101994
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaa-gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| |  ||| |||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  23102207 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaggggtctcctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 23102109  T
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 413  Q
    |||||||||||||||    ||||| |||||| || |||||||||| | |||||||||||||||||||| ||||||||| ||||||||  |  ||||||||    
T  23102108 cttcgcttaagcgacgtccagttcgcttaagtgatcggcttacagtaagtctgggttctgctcgcttacggttcgcttaagcgaactcttggcagaatca 23102009  T
Q  414 aaacggtttttcgct 428  Q
    ||  |||||||||||    
T  23102008 aattggtttttcgct 23101994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 23878325 - 23878425
Alignment:
Q  292 aaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    ||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  23878325 aaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgct 23878423  T
Q  391 tg 392  Q
    ||    
T  23878424 tg 23878425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 403
Target Start/End: Original strand, 21907750 - 21907865
Alignment:
Q  288 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 386  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| |||||||||||||||||||||| ||  |||||| ||||||| | ||||    
T  21907750 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggtt 21907848  T
Q  387 cgcttgagcgaacttct 403  Q
    ||||| |||||||||||    
T  21907849 cgcttaagcgaacttct 21907865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 349
Target Start/End: Original strand, 26884489 - 26884639
Alignment:
Q  198 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 296  Q
    ||||||||| |||| |||||||||| |||||||||| |||| ||||||||| | ||| ||||| | | |||||| |||||||||||||   |||| ||||    
T  26884489 agtaggatt-tgatgcctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaag 26884586  T
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    ||||||||||||||||| |||||||||||||  | ||| || |||||||||||    
T  26884587 aggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgacc 26884639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 215 - 360
Target Start/End: Original strand, 24660876 - 24661021
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | |||||| ||||||||||  ||||||||||||| ||||||||||| |       
T  24660876 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaag-taaaattcaaaaagtggctgactaagacctt 24660974  T
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 360  Q
    ||| ||||||||||| | | | || ||||||||||||||| ||||||    
T  24660975 ctttgcttaagcgacggctggctcgcttaagcgaccggctcacagaa 24661021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 434
Target Start/End: Complemental strand, 5706759 - 5706610
Alignment:
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 384  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  5706759 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 5706660  T
Q  385 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  5706659 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 5706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 390
Target Start/End: Original strand, 29281368 - 29281470
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 387  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || ||    
T  29281368 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtc 29281467  T
Q  388 gct 390  Q
    |||    
T  29281468 gct 29281470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 264 - 371
Target Start/End: Complemental strand, 25181606 - 25181501
Alignment:
Q  264 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    ||||||| ||||||||||||| | |||| ||| |||||||||||  |||| |||||||||||||| | |||||  ||||||||||| |||||||| ||||    
T  25181606 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacactcagttcgcttaagcgacggctagtttgcttaagcgaccagcttacagtaggt 25181509  T
Q  364 ctgggttc 371  Q
    ||||||||    
T  25181508 ctgggttc 25181501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 437
Target Start/End: Original strand, 23264515 - 23264613
Alignment:
Q  339 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 437  Q
    |||||||||||||||||||||  ||| |||||  ||||||| | ||||||||||||||||||||| ||| ||| |||| | ||||||||| || |||||    
T  23264515 cttaagcgaccggcttacagagagtcggggtttcgctcgctaacggttcgcttgagcgaacttctgacataatgaaaatgatttttcgcttacgggttc 23264613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 9957 - 10050
Alignment:
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||||| ||||  |||| || ||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  9957 aggctgtctaacactcagtttgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 10050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 328
Target Start/End: Original strand, 23264301 - 23264524
Alignment:
Q  100 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 199  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||| |||||||| ||| ||||||||  ||||| |||||||| ||||   |||| | |    
T  23264301 catcaagttcattcaacatagtatatgttcacttggtttcatactcgatcatctccaaa-ttcactaaactcaactaattcgattacca-agtgttttgg 23264398  T
Q  200 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 298  Q
    |||||||  |     |||| || ||||||||||||| || | ||||||| | ||||||||| | | |||||| |||||||| || ||| ||||||||| |    
T  23264399 taggatttag---tgtatataaaggttatacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggc-aaagttcaaaaagtg 23264494  T
Q  299 gctgactaaggctca-cttcgcttaagcgac 328  Q
    ||||||||||| ||| |||||||||||||||    
T  23264495 gctgactaagg-tcatcttcgcttaagcgac 23264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 27208394 - 27208322
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 360  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27208394 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 27210729 - 27210657
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 360  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27210729 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27210657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 7e-87; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 29615183 - 29614738
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    |||||||||||||  ||||  |||||| |||||||||||||||| ||||| || |   |||||||||||||||||||||||| |||||||||| ||||||    
T  29615183 tctacatacaactcgactattacatatgtttcatatgacttactgctccgcaactc--aacaatccagaacatacacaattatttataattattcacata 29615086  T
Q  100 catcaatttcattcaataaattatatat--------tcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagct 191  Q
    |||||||  ||||| | |  ||||||||        ||||||| ||||||||||||||||||| || ||| ||||||| ||| |||||| |||||| |||    
T  29615085 catcaatcacattccacatgttatatatacacatattcacttgttttcatactcaatcatctccaacatttactaacaccaatcaattcaatcaccggct 29614986  T
Q  192 tgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattca 291  Q
     |||||| || ||||||| ||||||| | |||||||||| |||||||||||| ||| ||||||||||||||||| ||||| |||||||| ||||| ||||    
T  29614985 cgttctaataagattctgttacctatgccagggttatactagttaaaggaaatattatagaatgctcaagaagttccctcatgcacgaaacaaaagttca 29614886  T
Q  292 aaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt----------- 380  Q
     |   |||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||||| |||||||||||| ||||||||               
T  29614885 ga---aggctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccgacttacagtaggtctgggttcagctcgcttacgggttgctc 29614789  T
Q  381 agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 431  Q
    | ||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  29614788 acggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 29614738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 74 - 403
Target Start/End: Original strand, 25396343 - 25396671
Alignment:
Q  74 cacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaa 173  Q
    |||||||||| ||||| || |  || |||||| |||||||||   | |||||||||||||| |||||||||||||||| || ||||||||||||  ||||    
T  25396343 cacaattaataataatcatactaatgcatcaagttcattcaacctagtatatattcacttggtttcatactcaatcatatccaaaattcactaaattcaa 25396442  T
Q  174 ccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcg 272  Q
    |||||||||| ||||   ||||  |||||||||| | | | ||||||||||||||||||||| || ||||||||||||||||||||| | | | |||| |    
T  25396443 ccaattcgattaccaatgtgtttcagtaggattcag-tgcatatacaagggttatacaagttgaaagaaacattttagaatgctcaaaaggattccctag 25396541  T
Q  273 tgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttct 372  Q
    ||||| |||| | ||||||||||| || |||||||| |  |||||||||||||||| | | | || |||||||||||| ||||||||  ||  ||||||     
T  25396542 tgcactaagc-ataattcaaaaagtggttgactaagacctacttcgcttaagcgacggctggctcgcttaagcgaccgacttacagagagttggggttcc 25396640  T
Q  373 gctcgcttagggttcgcttgagcgaacttct 403  Q
    ||||||| | ||||||||| || ||||||||    
T  25396641 gctcgctaacggttcgcttaagtgaacttct 25396671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 220 - 398
Target Start/End: Original strand, 18799754 - 18799932
Alignment:
Q  220 aagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcg 318  Q
    |||||||||||||||| || | ||||| || ||||||| || | | ||||||  |||| || |||||  ||||||||| |||||||||||| | ||||||    
T  18799754 aagggttatacaagttgaaaggaacatgtttgaatgctaaaaagggtcccctaatgcatgaggcaaag-ttcaaaaagtggctgactaaggttgacttcg 18799852  T
Q  319 cttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 398  Q
    |||||||||| | |||||| |||||||||||||||||||| | |||||||||| ||||||||| ||||||||| ||||||    
T  18799853 cttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttacggttcgcttaagcgaa 18799932  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 215 - 400
Target Start/End: Complemental strand, 21565936 - 21565751
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| | | || |||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  21565936 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtctcctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 21565838  T
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaact 400  Q
    |||||||||||||||    ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  21565837 cttcgcttaagcgacgtccagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgagcgaact 21565751  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 250 - 434
Target Start/End: Original strand, 12167637 - 12167832
Alignment:
Q  250 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  12167637 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 12167735  T
Q  350 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  12167736 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 12167832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 250 - 434
Target Start/End: Original strand, 19286546 - 19286741
Alignment:
Q  250 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19286546 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19286644  T
Q  350 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19286645 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19286741  T

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Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 19877730 - 19877870
Alignment:
Q  250 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19877730 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19877828  T
Q  350 ggcttacagaagg-tctgggttctgctcgcttagggttcgct 390  Q
     |||||||| ||| ||||||||| | ||||||| || |||||    
T  19877829 agcttacagtaggttctgggttcagttcgcttacgggtcgct 19877870  T

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Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 250 - 434
Target Start/End: Original strand, 19883506 - 19883701
Alignment:
Q  250 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||| | ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19883506 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctaattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19883604  T
Q  350 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19883605 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19883701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 19300509 - 19300308
Alignment:
Q  198 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 296  Q
    ||||||||| |||| ||||||||||||||||||||| |||| |||||| || | ||| ||||| | | |||||| ||||||||||||||  |||| | ||    
T  19300509 agtaggatt-tgatgcctatacaagggttatacaagctaaaagaaacacttaaaaatactcaaaagggtcccctagtgcacgaagcaaag-ttcagatag 19300412  T
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttct-gctcgcttagggttcgcttgagc 395  Q
    |||||||||||||||||  ||||||||||||  | ||| || ||||||||||| || ||||| | || ||| |||| ||||||| | |||||||| ||||    
T  19300411 aggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgaccagc-tacaggaagtttggattctcgctcgctcacggttcgctcgagc 19300313  T
Q  396 gaact 400  Q
    |||||    
T  19300312 gaact 19300308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 250 - 371
Target Start/End: Complemental strand, 19786650 - 19786529
Alignment:
Q  250 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    |||| ||||||||||||||||| ||||  |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19786650 agaacgctcaagaagtcccctcatgcattaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19786552  T
Q  350 ggcttacagaagg-tctgggttc 371  Q
     |||||||| ||| |||||||||    
T  19786551 agcttacagtaggttctgggttc 19786529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 434
Target Start/End: Complemental strand, 34640724 - 34640575
Alignment:
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 384  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  34640724 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 34640625  T
Q  385 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  34640624 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34640575  T

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Target: chr6; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 434
Target Start/End: Complemental strand, 34647398 - 34647249
Alignment:
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 384  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  34647398 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 34647299  T
Q  385 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  34647298 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34647249  T

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Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 392
Target Start/End: Complemental strand, 19472082 - 19471914
Alignment:
Q  223 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 321  Q
    ||||||||||||| |||||||||||| | ||||||||| | | |||||| ||||||||||| ||||||||||||| ||||||| ||| |   ||||||||    
T  19472082 ggttatacaagttgaaggaaacatttcaaaatgctcaaaaggatcccctagtgcacgaagc-aaaattcaaaaagtggctgac-aagaccttcttcgctt 19471985  T
Q  322 aagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 392  Q
    ||||||  | | | || ||||||||||||||| |||||| ||  |||||| ||||||| | || |||||||    
T  19471984 aagcgatggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcgctaacggctcgcttg 19471914  T

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Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 19786855 - 19786751
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    |||||||||||||  ||||| |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| |||||||||||||||||    
T  19786855 tctacatacaactcgactactacatatgtatcatatgacttactactcc-ataactcaaacaatccaga-cttacacaattatttataattatgcacata 19786758  T
Q  100 catcaat 106  Q
    |||||||    
T  19786757 catcaat 19786751  T

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Target: chr6; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 339 - 434
Target Start/End: Complemental strand, 24513465 - 24513370
Alignment:
Q  339 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
    ||||||||||||||| |||||| || ||||||| ||||||| | |||||||||||||||||||||   ||||| |||| | ||||||||| |||||    
T  24513465 cttaagcgaccggctcacagaaagtttgggttccgctcgctaacggttcgcttgagcgaacttctggaagaatgaaaatgatttttcgcttacagg 24513370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 12167431 - 12167535
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    |||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| |||||||||||||||||    
T  12167431 tctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataattatgcacata 12167528  T
Q  100 catcaat 106  Q
    |||||||    
T  12167529 catcaat 12167535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 19877524 - 19877628
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    |||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| |||||||||||||||||    
T  19877524 tctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataattatgcacata 19877621  T
Q  100 catcaat 106  Q
    |||||||    
T  19877622 catcaat 19877628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 19883300 - 19883404
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    |||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| |||||||||||||||||    
T  19883300 tctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataattatgcacata 19883397  T
Q  100 catcaat 106  Q
    |||||||    
T  19883398 catcaat 19883404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 19286372 - 19286444
Alignment:
Q  32 atatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacatacatcaat 106  Q
    ||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  19286372 atatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataattatgcacatacatcaat 19286444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 20008622 - 20008529
Alignment:
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||||| ||||  |||| ||||||||||| || | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  20008622 aggctgtctaacactcagttcgcttaagcaacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 20008529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 434
Target Start/End: Complemental strand, 25470448 - 25470290
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt------ 380  Q
    |||| ||| ||||||||||||| ||||||||||||||||||   |||||| |||||||||||  ||||||| ||| |||||| || | ||||||          
T  25470448 ttcagaaaaaggctgactaaggttcacttcgcttaagcgacgtctagttcgcttaagcgaccaacttacagtaggttctgggctcagttcgcttacgggt 25470349  T
Q  381 -----agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
         | |||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  25470348 cgctcacggttcgcttgagcgaattttggacagaatcaaaatggtttttcgctcacagg 25470290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 432
Target Start/End: Complemental strand, 21365200 - 21365067
Alignment:
Q  310 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg-----------ttcgcttgagcgaa 398  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| ||           ||||||||||||||    
T  21365200 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 21365101  T
Q  399 cttctaacagaatcaaaacggtttttcgctcaca 432  Q
    |||   |||||||||||| |||||||||||||||    
T  21365100 ctttggacagaatcaaaatggtttttcgctcaca 21365067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 432
Target Start/End: Complemental strand, 23969182 - 23969049
Alignment:
Q  310 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg-----------ttcgcttgagcgaa 398  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| ||           ||||||||||||||    
T  23969182 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 23969083  T
Q  399 cttctaacagaatcaaaacggtttttcgctcaca 432  Q
    |||   |||||||||||| |||||||||||||||    
T  23969082 ctttggacagaatcaaaatggtttttcgctcaca 23969049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 434
Target Start/End: Complemental strand, 19786506 - 19786455
Alignment:
Q  383 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19786506 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19786455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Original strand, 19877874 - 19877923
Alignment:
Q  383 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcaca 432  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||    
T  19877874 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 19877923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 9186841 - 9186903
Alignment:
Q  265 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgac 328  Q
    |||||| ||||||||||||||  ||||||||| |||||||||||| ||| |||||||||||||||    
T  9186841 tcccctagtgcacgaagcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgac 9186903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 41456131 - 41455741
Alignment:
Q  1 tctacatacaacttaactaca-catatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    ||||||||||||| |||||   ||||| |||||||||||||||||||||| || | | |||||| |||||||| |||||||| |||||||||||| | ||    
T  41456131 tctacatacaactcaactaatgcatatgtttcatatgacttactactccgtaact-caaacaattcagaacattcacaattatttataattatgcgctta 41456033  T
Q  100 catcaatttcattcaataaattatatattcacttgat-ttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttcta 198  Q
    ||||||||||||||||||  || ||||||||||| || ||| |||||||| ||||| || ||| ||||||| ||| |||||||||  |||||||||||||    
T  41456032 catcaatttcattcaatag-ttgtatattcacttaatcttcctactcaattatctccaacatttactaacaccaatcaattcgattgccagcttgttcta 41455934  T
Q  199 gtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagag 298  Q
    ||||||||||||||||||||| ||| |||||||||||||||   |  ||  |||| ||||| ||||||||||| ||||| |||||| | |||| ||| ||    
T  41455933 gtaggattctgatacctatactaggattatacaagttaaagaggaagttaaagaacgctcaggaagtcccctcatgcactaagcaacagttcagaaaaag 41455834  T
Q  299 gctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgcttagggttcgct 390  Q
    ||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||| || |||||    
T  41455833 gctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgct 41455741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 18914201 - 18914590
Alignment:
Q  1 tctacatacaacttaactacacatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacatac 100  Q
    ||||||||||||||||| | |||||| ||||||||||||||| |||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  18914201 tctacatacaacttaacaatacatatgtttcatatgacttacaactccgcaa-ttccaacaatccagaacatacacaattaattataattatgctcatac 18914299  T
Q  101 atcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagt 200  Q
    ||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||  ||  |||| ||||    
T  18914300 atcaatttcattcaacataatatatattcacttgatttcatactcaatcatctccaaaattcactaacatcaactaattccatcaatagagtgttttagt 18914399  T
Q  201 aggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagagg 299  Q
    |||||| || |   |||| || |||||||||||||  | |||| ||| |   |||||||| | | ||||||  ||||||| |||||||||| ||||| ||    
T  18914400 aggattatg-tgtatatataaaggttatacaagttggaagaaatattattatatgctcaaaaggatcccctaatgcacgaggcaaaaattc-aaaagtgg 18914497  T
Q  300 ctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 392  Q
    |||||||||| ||| ||||||||||||||  |   |||| ||||||||||||||||| |||  ||  |||||| ||||||| | ||||||||||    
T  18914498 ctgactaagg-tcatcttcgcttaagcgatggcaggttcgcttaagcgaccggcttatagagagttggggttccgctcgctaaaggttcgcttg 18914590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 288 - 428
Target Start/End: Complemental strand, 55499798 - 55499658
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 387  Q
    ||||||||| |||||||||||    ||||||||||||||||   |||||| |||||||||||||||||||| | |||| ||||||||||||||| |||||    
T  55499798 ttcaaaaagtggctgactaagatcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacagtaagtctaggttctgctcgcttacggttc 55499699  T
Q  388 gcttgagcgaacttctaacagaatcaaaacggtttttcgct 428  Q
    | |||||||||||  |  ||||||||||  |||||||||||    
T  55499698 gtttgagcgaactcttggcagaatcaaattggtttttcgct 55499658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 16802139 - 16802029
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 387  Q
    ||||||||| |||| |||||||   ||||||||||| |||| | ||| || |||||||||||||||||||| | |||||||||||||||||||| |||||    
T  16802139 ttcaaaaagtggctaactaaggtcaacttcgcttaaacgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttc 16802040  T
Q  388 gcttgagcgaa 398  Q
    |||||||||||    
T  16802039 gcttgagcgaa 16802029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 379
Target Start/End: Complemental strand, 13324562 - 13324381
Alignment:
Q  197 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 295  Q
    |||||||||| || ||||||||||||||||||| ||| | || ||||||| || |||||||||| | | ||||||  |||||||||||||| |||| |||    
T  13324562 tagtaggatt-tgttacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaa 13324465  T
Q  296 gaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgct 379  Q
    | ||||||||||||||||  ||||||||||||  | | | || |||||||||| ||||| ||||| || |||||| ||||||||    
T  13324464 gtggctgactaaggctcagctcgcttaagcgaaggctggctcgcttaagcgactggcttgcagaaagtttgggttttgctcgct 13324381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 431
Target Start/End: Original strand, 24192274 - 24192418
Alignment:
Q  298 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggtt-----------ctgctcgcttagggtt 386  Q
    ||||||||||||  ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||           | | ||||| | ||||    
T  24192274 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcaactcacttacggttcgctcacggtt 24192373  T
Q  387 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 431  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  24192374 cgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 24192418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 18136174 - 18136117
Alignment:
Q  58 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18136174 aacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 18136117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 13302974 - 13302844
Alignment:
Q  197 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 295  Q
    |||||||||| || ||||||||||||||||||| ||| | || ||||||| || |||||||||| | | ||||||  |||||||||||||| |||| |||    
T  13302974 tagtaggatt-tgttacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaa 13302877  T
Q  296 gaggctgactaaggctcacttcgcttaagcgac 328  Q
    | ||||||||||||||||  |||||||||||||    
T  13302876 gtggctgactaaggctcagctcgcttaagcgac 13302844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 13313650 - 13313520
Alignment:
Q  197 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 295  Q
    |||||||||| || ||||||||||||||||||| ||| | || ||||||| ||  ||||||||| | | ||||||  |||||||||||||| |||| |||    
T  13313650 tagtaggatt-tgttacctatacaagggttatataagctgaaagaaacatctttaaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaa 13313553  T
Q  296 gaggctgactaaggctcacttcgcttaagcgac 328  Q
    | ||||||||||||||||  |||||||||||||    
T  13313552 gtggctgactaaggctcagctcgcttaagcgac 13313520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 18129660 - 18129607
Alignment:
Q  58 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcat 111  Q
    |||||| |||||||| ||||||||||||||||||||| | ||||||||||||||    
T  18129660 aacaattcagaacattcacaattaattataattatgctcgtacatcaatttcat 18129607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 390
Target Start/End: Original strand, 14865216 - 14865319
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcga-cagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 386  Q
    |||| ||| |||||||||||  |||| ||||||||||||| | | |||||| ||||||||||| ||||| || |||||||||||| | ||||||| || |    
T  14865216 ttcagaaaaaggctgactaacactcagttcgcttaagcgaacggctagttcgcttaagcgaccagcttagagtaggtctgggttcagttcgcttacgggt 14865315  T
Q  387 cgct 390  Q
    ||||    
T  14865316 cgct 14865319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 10390083 - 10390034
Alignment:
Q  384 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 433  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10390083 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10390034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 10415172 - 10415123
Alignment:
Q  384 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 433  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10415172 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10415123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 10421842 - 10421793
Alignment:
Q  384 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 433  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10421842 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10421793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 398
Target Start/End: Complemental strand, 12034072 - 12034007
Alignment:
Q  333 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 398  Q
    ||||| ||||||||||| |||||||| |||||||||||  | ||||||| || |||||| ||||||    
T  12034072 agttcgcttaagcgaccagcttacagtaggtctgggtttagttcgcttacgggtcgcttaagcgaa 12034007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 9533232 - 9533335
Alignment:
Q  63 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 162  Q
    ||||||| ||||||||||||| ||||| |  |  || ||| || ||||||||| | | ||||| |||||||  |||||||||||||||||||  ||||||    
T  9533232 tccagaaaatacacaattaatcataatcaaactaatgcataaagttcattcaacatagtatatgttcacttagtttcatactcaatcatctc-caaattc 9533330  T
Q  163 actaa 167  Q
    |||||    
T  9533331 actaa 9533335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 161 - 328
Target Start/End: Original strand, 241 - 407
Alignment:
Q  161 tcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaa 260  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||||||||    
T  241 tcactaacatcaaccaattcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaa 340  T
Q  261 gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 328  Q
    || ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  341 gatgtccccttgtgcacgaagc-aaaattcagaaagaggctgactaaggttcacttcgcttaagcgac 407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 161 - 328
Target Start/End: Original strand, 7386 - 7552
Alignment:
Q  161 tcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaa 260  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||||||||    
T  7386 tcactaacatcaaccaattcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaa 7485  T
Q  261 gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 328  Q
    || ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  7486 gatgtccccttgtgcacgaagc-aaaattcagaaagaggctgactaaggttcacttcgcttaagcgac 7552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 434
Target Start/End: Original strand, 409 - 504
Alignment:
Q  350 ggcttacagaaggtctgggttctgctcgcttagggttcgcttg-----------agcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
    ||||||||||| ||||||||||||||||||||||||||| |||           ||||||||||| |||||||||||| |||||||||||||||||    
T  409 ggcttacagaaagtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgctcacagg 504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 434
Target Start/End: Original strand, 7554 - 7649
Alignment:
Q  350 ggcttacagaaggtctgggttctgctcgcttagggttcgcttg-----------agcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
    ||||||||||| ||||||||||||||||||||||||||| |||           ||||||||||| |||||||||||| |||||||||||||||||    
T  7554 ggcttacagaaagtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgctcacagg 7649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 116; Significance: 8e-59; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 110951 - 111284
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    ||||||||||||| |||||  |||||||||||||||||||||||||||| | || || | ||||||||||| |||||||||| ||||||||| |||||||    
T  110951 tctacatacaactcaactattacatatatttcatatgacttactactcc-acaactcga-caatccagaacctacacaattatttataattacgcacata 111048  T
Q  100 catcaatttcattcaataaattatatat--------tcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagct 191  Q
    |||||||  ||||| | |  ||||||||        ||||||| |||||||| |||||||||| || ||| ||||||| ||| |||| | |||||| |||    
T  111049 catcaatcacattccacatgttatatatatacatattcacttgttttcatacacaatcatctccaacatttactaacaccaatcaatccaatcaccggct 111148  T
Q  192 tgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattca 291  Q
    ||||||| |||||||| | |||||| || |||||||||| |||||||||| | ||| ||||||||||||||||||||||| ||||| ||| || | ||||    
T  111149 tgttctaataggattcagttacctacaccagggttatactagttaaaggagaaattatagaatgctcaagaagtcccctcatgcactaagtaatagttca 111248  T
Q  292 aaaagaggctgactaaggctcacttcgcttaagcgac 328  Q
     ||| |||||||||||| |||||||||||||||||||    
T  111249 gaaa-aggctgactaagactcacttcgcttaagcgac 111284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 390
Target Start/End: Complemental strand, 91881 - 91783
Alignment:
Q  292 aaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||| ||||| |||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  91881 aaaaaaggctaactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 91783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 390
Target Start/End: Complemental strand, 97607 - 97509
Alignment:
Q  292 aaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||| ||||| |||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  97607 aaaaaaggctaactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 97509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 111330 - 111378
Alignment:
Q  383 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 431  Q
    |||||||||||||||||||   |||||||||||| ||||||||||||||    
T  111330 ggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 125 - 390
Target Start/End: Original strand, 13742860 - 13743121
Alignment:
Q  125 tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaaggg 224  Q
    |||||||||| |||||||| |||||| ||| || ||| ||||||| |||  ||| | |||  | ||| |||||| |||||||| | |||||| || ||||    
T  13742860 tattcacttgttttcatacacaatcacctccaacatt-actaacaccaattaatccaatcctcggctcgttctaataggattcggttacctacaccaggg 13742958  T
Q  225 ttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaag 324  Q
    |||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| |||| ||   |||||||||||||||||||||||||||    
T  13742959 ttatactagttaaaagaaatattatagaatgctcaagaagtcccctcatgcacgaaacaaaagttcagaa---ggctgactaaggctcacttcgcttaag 13743055  T
Q  325 cgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||| | |||||| ||||||||||||||||| || |||||||||||| ||||||||| || |||||    
T  13743056 cgacggctagttcgcttaagcgaccggcttatagtaggtctgggttcagctcgcttacgggtcgct 13743121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 13123955 - 13123506
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    ||||||||||||| |||||| ||||||||||||||||||||| |||||| | || || | |||| ||||||||||||||||| |||||||||||||||||    
T  13123955 tctacatacaactcaactactacatatatttcatatgacttaatactcc-acaactcga-caattcagaacatacacaattatttataattatgcacata 13123858  T
Q  100 catcaatttcattca-------ataaat-tata--tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccag 189  Q
    |||||||  |||||        ||| || ||||  |||||||||  || ||||| |||||| | | || ||| ||||| | ||| |||| | |||||| |    
T  13123857 catcaatcacattcctcatgttatacatatatacgtattcacttatttacatacacaatcaacaccaacatttactaataccaatcaatccaatcaccgg 13123758  T
Q  190 cttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaatt 289  Q
    ||||||||| |||| ||||| |||||| || | |||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || | ||    
T  13123757 cttgttctaataggcttctgctacctacaccaaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaatagtt 13123658  T
Q  290 caaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt--------- 380  Q
    || ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||             
T  13123657 cagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgc 13123559  T
Q  381 --agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 431  Q
      | |||||||||||||||||||   |||||||||||| ||||||||||||||    
T  13123558 tcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 13123506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 12710884 - 12710496
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    ||||||||||||| |||||| ||||||||||||||||||||| |||||| | || || | |||| ||||||||||||||||| |||||||||||||||||    
T  12710884 tctacatacaactcaactactacatatatttcatatgacttaatactcc-ataactcga-caattcagaacatacacaattatttataattatgcacata 12710787  T
Q  100 catcaatttcattca-------ataaat-tata--tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccag 189  Q
    |||||||  |||||        ||| || ||||  |||||||||  || ||||| |||||| | | || ||| ||||| | ||| |||| | |||||| |    
T  12710786 catcaatcacattcctcatgttatacatatatacgtattcacttatttacatacacaatcaacaccaacatttactaataccaatcaatccaatcaccgg 12710687  T
Q  190 cttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaatt 289  Q
    |||||| || |||| ||||  |||||| || | |||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || | ||    
T  12710686 cttgttataataggcttcttctacctacaccaaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaatagtt 12710587  T
Q  290 caaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 381  Q
    || ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | |||||||    
T  12710586 cagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgctta 12710496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 215 - 437
Target Start/End: Original strand, 16676623 - 16676845
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| | | ||||||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  16676623 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtcccctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 16676721  T
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 413  Q
    |||||||||||||||   |||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||| |  | |||||||||    
T  16676722 cttcgcttaagcgacgactagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttatggttcgcttgagcgaattcttgacagaatca 16676821  T
Q  414 aaacggtttttcgctcacaggttc 437  Q
    ||| ||||||||||| ||||||||    
T  16676822 aaatggtttttcgcttacaggttc 16676845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 215 - 437
Target Start/End: Original strand, 17650859 - 17651081
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| | | ||||||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  17650859 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtcccctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 17650957  T
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 413  Q
    |||||||||||||||   |||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||| |  | |||||||||    
T  17650958 cttcgcttaagcgacgactagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttatggttcgcttgagcgaattcttgacagaatca 17651057  T
Q  414 aaacggtttttcgctcacaggttc 437  Q
    ||| ||||||||||| ||||||||    
T  17651058 aaatggtttttcgcttacaggttc 17651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 250 - 434
Target Start/End: Original strand, 13006706 - 13006901
Alignment:
Q  250 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  13006706 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 13006804  T
Q  350 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  13006805 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 13006901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 121 - 359
Target Start/End: Original strand, 46625166 - 46625403
Alignment:
Q  121 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 220  Q
    |||||||||| ||| |||||||||||||||| |  |||||||||||   ||||||||||| || ||||   ||||  |||||||||  | | | |||||     
T  46625166 tatatattcatttggtttcatactcaatcatattcaaaattcactatattcaaccaattcaattaccaatgtgtttcagtaggatttag-tgcatatacc 46625264  T
Q  221 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 319  Q
    ||||| ||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||| ||||| |||||| || ||||||||||| |  |||||||    
T  46625265 agggtcatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaaacaaaa-ttcaaagagtggctgactaagacctacttcgc 46625363  T
Q  320 ttaagcgacagatagttcacttaagcgaccggcttacaga 359  Q
    ||||||||| | | | || ||||||||||| |||||||||    
T  46625364 ttaagcgacggctggctcgcttaagcgacctgcttacaga 46625403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 100 - 359
Target Start/End: Original strand, 13678649 - 13678906
Alignment:
Q  100 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 199  Q
    |||||| ||||||||| | | ||||| |||||||| | | ||||||||||||||  ||| ||||||||  ||||| |||||||| ||||   ||||  ||    
T  13678649 catcaagttcattcaacatagtatatgttcacttggtatgatactcaatcatcttcaaa-ttcactaaactcaactaattcgattaccaaagtgtttcag 13678747  T
Q  200 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 298  Q
    |||||||| | | | |||| || |||||||||| || || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| |    
T  13678748 taggattcag-tgcatatataaaggttatacaaattgaaagaaacattttttaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtg 13678845  T
Q  299 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 359  Q
    ||||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||    
T  13678846 gctgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgaccggcttacaga 13678906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 13742719 - 13742803
Alignment:
Q  21 acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacatacatcaat 106  Q
    |||||| ||||||||||||||||||||| | || || |||||||||||||||||||||||| |||||||||||| |||||||||||    
T  13742719 acatatgtttcatatgacttactactcc-acaactcaaacaatccagaacatacacaattatttataattatgctcatacatcaat 13742803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 11390020 - 11389910
Alignment:
Q  288 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 386  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||||| || |||| | |||||||||| ||||||||| ||||    
T  11390020 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaagcgaccgactcacagtaagtctgggttccgctcgcttacggtt 11389922  T
Q  387 cgcttgagcgaa 398  Q
    ||||||||||||    
T  11389921 cgcttgagcgaa 11389910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 392
Target Start/End: Complemental strand, 20311709 - 20311631
Alignment:
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 392  Q
    ||||||||||||||| | ||| || |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||    
T  20311709 cttcgcttaagcgacggctagctcgcttaagcgaccggcttgcagtaagtctgggttctgctcgcttacggttcgcttg 20311631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 434
Target Start/End: Complemental strand, 12591377 - 12591230
Alignment:
Q  299 gctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------agggtt 386  Q
    ||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||||    
T  12591377 gctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggatctgggatcagttcgcttacgggtcgctcacggtt 12591278  T
Q  387 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
    |||||||||||| ||   |||||||||||| |||||||||||||||||    
T  12591277 cgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 12591230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 380
Target Start/End: Complemental strand, 11383554 - 11383440
Alignment:
Q  265 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||| |||| |||| | ||    
T  11383554 tcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaagcgacaggctcacagtaagt 11383457  T
Q  364 ctgggttctgctcgctt 380  Q
    |||||||| ||||||||    
T  11383456 ctgggttccgctcgctt 11383440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 13006532 - 13006604
Alignment:
Q  32 atatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacatacatcaat 106  Q
    ||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  13006532 atatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataattatgcacatacatcaat 13006604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 390
Target Start/End: Original strand, 16090457 - 16090559
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 387  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  16090457 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 16090556  T
Q  388 gct 390  Q
    |||    
T  16090557 gct 16090559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 14320315 - 14320243
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 360  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||||||| ||||||    
T  14320315 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccggctcacagaa 14320243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 18607248 - 18607339
Alignment:
Q  63 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctc 154  Q
    ||||||| ||||||||||||| ||||| |  |  || |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||    
T  18607248 tccagaaaatacacaattaatcataatcaaactaatgcatcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc 18607339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 21231643 - 21231554
Alignment:
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttct 403  Q
    |||||||||||||||    ||||  ||||||||||| ||| |||||| ||  |||||| ||||||| | |||||||||||||||||||||    
T  21231643 cttcgcttaagcgacgaccagtttgcttaagcgaccagctcacagaaagttggggttccgctcgctgacggttcgcttgagcgaacttct 21231554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 147453 - 147556
Alignment:
Q  63 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 162  Q
    ||||||| ||||||||||||| ||||| |  |  || |||||| ||||||||| | | || || |||||||| |||||||||||||||||||  ||||||    
T  147453 tccagaaaatacacaattaatcataatcaaactaatgcatcaagttcattcaacatagtacatgttcacttggtttcatactcaatcatctc-caaattc 147551  T
Q  163 actaa 167  Q
    |||||    
T  147552 actaa 147556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 2464758 - 2464838
Alignment:
Q  310 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  2464758 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 2464838  T

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Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 3858087 - 3858007
Alignment:
Q  310 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  3858087 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 3858007  T

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Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 3858003 - 3857953
Alignment:
Q  383 ggttcgcttgagcgaacttctaacagaatc-aaaacggtttttcgctcaca 432  Q
    |||||||||||||||||||  ||||||||| |||| |||||||||||||||    
T  3858003 ggttcgcttgagcgaactttgaacagaatcaaaaatggtttttcgctcaca 3857953  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 16475983 - 16475929
Alignment:
Q  63 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaata 117  Q
    ||||||| ||||||||||||| ||||| |||| |||||||| | |||||||||||    
T  16475983 tccagaaaatacacaattaatcataatcatgctcatacatcgagttcattcaata 16475929  T

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Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 29181780 - 29181690
Alignment:
Q  300 ctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    ||||||||  |||| || ||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  29181780 ctgactaacactcagtttgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttatgggtcgct 29181690  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 2966383 - 2966431
Alignment:
Q  333 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 381  Q
    ||||| ||||||||||| |||||||| |||||||||||| | |||||||    
T  2966383 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgctta 2966431  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 12710483 - 12710435
Alignment:
Q  383 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 431  Q
    |||||||||||||||||||   |||||||||||| ||||||| ||||||    
T  12710483 ggttcgcttgagcgaactttggacagaatcaaaatggtttttggctcac 12710435  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 13318007 - 13318051
Alignment:
Q  58 aacaatccagaacatacacaattaattataattatgcacatacat 102  Q
    ||||||||||||  |||||||||||| |||||||||| |||||||    
T  13318007 aacaatccagaaattacacaattaatcataattatgcgcatacat 13318051  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 20907086 - 20907038
Alignment:
Q  333 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 381  Q
    ||||| ||||||||||| |||||||| |||||||||||| | |||||||    
T  20907086 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgctta 20907038  T

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Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 121 - 434
Target Start/End: Complemental strand, 8046744 - 8046420
Alignment:
Q  121 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 220  Q
    |||||||||||||| |||||||| |||||||||| || ||| ||||||| ||| |||| | ||| || |||||||||| |||||||| | |||||| ||     
T  8046744 tatatattcacttgttttcatacacaatcatctccaacatttactaacaccaatcaatccaatcgccggcttgttctaataggattcggttacctacacc 8046645  T
Q  221 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 320  Q
    |||||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || | |||| ||| ||||||||||||||||||||||||    
T  8046644 agggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaacagttcagaaaaaggctgactaaggctcacttcgct 8046545  T
Q  321 taagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacaga 409  Q
    ||||||||   ||| || |||||||||||  |||| || |||||||||||| | ||||||           | |||||||||||||||||||   |||||    
T  8046544 taagcgacgtctagctcgcttaagcgaccaacttatagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacaga 8046445  T
Q  410 atcaaaacggtttttcgctcacagg 434  Q
    ||||||| |||||||||||||||||    
T  8046444 atcaaaatggtttttcgctcacagg 8046420  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 314 - 437
Target Start/End: Original strand, 15407485 - 15407608
Alignment:
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 413  Q
    ||||||||||||||| |  ||||| ||||||||||||||| |||||| |||| ||||| ||||||| | |||||||||||||||||||||  ||||||||    
T  15407485 cttcgcttaagcgacggccagttcgcttaagcgaccggctcacagaaagtctaggttccgctcgctgacggttcgcttgagcgaacttctggcagaatca 15407584  T
Q  414 aaacggtttttcgctcacaggttc 437  Q
    ||| ||||||||||| || |||||    
T  15407585 aaatggtttttcgcttacgggttc 15407608  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 14486052 - 14486154
Alignment:
Q  298 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 397  Q
    ||||||||||||||||||||||||||||||  | | | || |||||||||||||||||||||  || ||||||| ||||||| | |||||||||||||||    
T  14486052 ggctgactaaggctcacttcgcttaagcgaaggctggctcgcttaagcgaccggcttacagagagtttgggttccgctcgctcacggttcgcttgagcga 14486151  T
Q  398 act 400  Q
    |||    
T  14486152 act 14486154  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 14555938 - 14555881
Alignment:
Q  58 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 115  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  14555938 aacaatccagaacaaacacaattaattataattatgctcatacatcaatttcattcaa 14555881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 349
Target Start/End: Original strand, 11847397 - 11847537
Alignment:
Q  209 gatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaa 307  Q
    |||||||||||||| |||||||||| || | |||||| ||   ||| ||||| | | |||||| |||||| |||||||  |||| |||||||||||||||    
T  11847397 gatacctatacaagagttatacaagctagaagaaacacttacaaatactcaaaagggtcccctagtgcacaaagcaaag-ttcagaaagaggctgactaa 11847495  T
Q  308 ggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    ||||||  ||||||||||||| | |||||| |||||||||||    
T  11847496 ggctcagctcgcttaagcgacgggtagttcgcttaagcgacc 11847537  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 14485975 - 14486037
Alignment:
Q  197 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaa 260  Q
    |||||||||| |||||||||||||||||||||||||| | || |||||||||||||||||||||    
T  14485975 tagtaggatt-tgatacctatacaagggttatacaagctgaaagaaacattttagaatgctcaa 14486037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 297 - 434
Target Start/End: Original strand, 53483022 - 53483171
Alignment:
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 384  Q
    ||||||||||||| |||||||||||||||||| |  ||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  53483022 aggctgactaaggttcacttcgcttaagcgacggcaagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 53483121  T
Q  385 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  53483122 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 53483171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 8046881 - 8046777
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    |||||||||||||  ||||  |||||||||||||||||||||||||||| | || || |  |||||| | |||||||||||| ||||||||||||||| |    
T  8046881 tctacatacaactcgactattacatatatttcatatgacttactactcc-acaactc-agtaatccaaatcatacacaattatttataattatgcacaca 8046784  T
Q  100 catcaat 106  Q
    |||||||    
T  8046783 catcaat 8046777  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 390
Target Start/End: Complemental strand, 16147514 - 16147412
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 387  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  16147514 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 16147415  T
Q  388 gct 390  Q
    |||    
T  16147414 gct 16147412  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 327
Target Start/End: Original strand, 8834185 - 8834297
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    ||||||| ||||||||||||| || |||||||||||||| |||||| | | | | || ||||| |||||||||| |||||||| ||||||||||| |       
T  8834185 tatacaaaggttatacaagttgaaagaaacattttagaacgctcaaaaggattctctagtgcatgaagcaaaaa-tcaaaaagtggctgactaagacctt 8834283  T
Q  314 cttcgcttaagcga 327  Q
    ||||||||||||||    
T  8834284 cttcgcttaagcga 8834297  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 381
Target Start/End: Original strand, 27905613 - 27905729
Alignment:
Q  264 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    |||||||  ||||||||||||||||||| |||| |||||||| |||||||  ||||||||||||  | ||| || ||||||||| | ||| ||| |||||    
T  27905613 gtcccctaatgcacgaagcaaaaattcagaaagtggctgact-aggctcagctcgcttaagcgaagggtagctcgcttaagcgatcagctcacaaaaggt 27905711  T
Q  364 ctgggttctgctcgctta 381  Q
      ||||| ||||||||||    
T  27905712 tggggttttgctcgctta 27905729  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 359
Target Start/End: Original strand, 15244566 - 15244658
Alignment:
Q  267 ccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 359  Q
    |||| ||||||||||||||| ||||||||| ||||||||||| |   ||||| ||||||||| | |   || |||||||||||||||||||||    
T  15244566 ccctagtgcacgaagcaaaatttcaaaaagtggctgactaagaccttcttcgattaagcgacggttgactcgcttaagcgaccggcttacaga 15244658  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 18212523 - 18212623
Alignment:
Q  66 agaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcact 165  Q
    |||| ||||||||||||| ||||| |  |  || |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||    
T  18212523 agaaaatacacaattaatcataatcaaactaatgcatcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcact 18212621  T
Q  166 aa 167  Q
    ||    
T  18212622 aa 18212623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 389
Target Start/End: Original strand, 13887086 - 13887258
Alignment:
Q  217 tacaagggttatacaagttaaaggaaacatttt-agaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcac 314  Q
    ||||| ||||||||||||| || |||||||||| | |||| |||| | | | |||| ||||||||||||||| ||||||| | |||| |||||| |   |    
T  13887086 tacaaaggttatacaagttgaaagaaacatttttaaaatgttcaaaaggattccctagtgcacgaagcaaaa-ttcaaaa-gtggctaactaagaccttc 13887183  T
Q  315 ttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgc 389  Q
    |||||||||||||| | | | || ||||| |||||||||||||||  ||  | |||||||||||| | |||||||    
T  13887184 ttcgcttaagcgacggctggctcgcttaaacgaccggcttacagagagttggcgttctgctcgctaatggttcgc 13887258  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 389
Target Start/End: Original strand, 13887943 - 13888115
Alignment:
Q  217 tacaagggttatacaagttaaaggaaacatttt-agaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcac 314  Q
    ||||| ||||||||||||| || |||||||||| | |||| |||| | | | |||| ||||||||||||||| ||||||| | |||| |||||| |   |    
T  13887943 tacaaaggttatacaagttgaaagaaacatttttaaaatgttcaaaaggattccctagtgcacgaagcaaaa-ttcaaaa-gtggctaactaagaccttc 13888040  T
Q  315 ttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgc 389  Q
    |||||||||||||| | | | || ||||| |||||||||||||||  ||  | |||||||||||| | |||||||    
T  13888041 ttcgcttaagcgacggctggctcgcttaaacgaccggcttacagagagttggcgttctgctcgctaatggttcgc 13888115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 359
Target Start/End: Original strand, 15307415 - 15307563
Alignment:
Q  215 tatacaagggttatacaagtt---aaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggc 310  Q
    ||||||| |||||||||||||   |||  |||||||||| ||||||| | | | | |||| ||||||||||||||  ||| ||||| ||||||||||| |    
T  15307415 tatacaaaggttatacaagttgaaaaaaaaaacattttaaaatgctcgaaaggattccctagtgcacgaagcaaagtttcgaaaagtggctgactaagac 15307514  T
Q  311 tcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 359  Q
       ||||||||||||||  | | | || |||||||||||| ||||||||    
T  15307515 cttcttcgcttaagcgatggctggctcgcttaagcgaccgacttacaga 15307563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 121 - 390
Target Start/End: Original strand, 324 - 592
Alignment:
Q  121 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 220  Q
    |||||||||||||| |||||||| | |||||||| || ||| ||||||| ||| |||| | |||||  |||||||||| |||||||| | |||||| ||     
T  324 tatatattcacttgttttcatacaccatcatctccaacatttactaacaccaatcaatccaatcactggcttgttctaataggattcggttacctacacc 423  T
Q  221 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 320  Q
    | |||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| |||||||||||    
T  424 aaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgct 522  T
Q  321 taagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  523 taagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 165 - 269
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    ||||||||||||| |||||  |||||||||||||||||||||||||||| | |  || |||||||||||||||||||||||| ||||||||||||||| |    
T  165 tctacatacaactcaactattacatatatttcatatgacttactactcc-acagctc-aacaatccagaacatacacaattatttataattatgcacaca 262  T
Q  100 catcaat 106  Q
    |||||||    
T  263 catcaat 269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 215 - 434
Target Start/End: Original strand, 10610 - 10829
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgct-caagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    |||| ||||||||||||||||||| |  |||| ||  |||||| ||||   ||||||  ||||||| |||||  ||||||||| |||||||||||    |    
T  10610 tatataagggttatacaagttaaaagggacatgtttaaatgctacaagggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaagatcaa 10708  T
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 413  Q
    ||||||||||||||| | ||| || |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10709 cttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttagggttcgcttgagcgaacttctgacagaatca 10808  T
Q  414 aaacggtttttcgctcacagg 434  Q
    ||| |||||||||||||||||    
T  10809 aaatggtttttcgctcacagg 10829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 7667 - 7517
Alignment:
Q  58 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaa 157  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||    
T  7667 aacaacccagaacatacccaattaattataattatgctcatacatcaatttcattcaacatactatatattcacttgatttcatactcaatcatctccaa 7568  T
Q  158 aattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctg 209  Q
    ||||||||||| ||||| |||||||||||| |  | || |||||||||||||    
T  7567 aattcactaac-tcaactaattcgatcaccggagtattttagtaggattctg 7517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 210 - 399
Target Start/End: Original strand, 30194 - 30383
Alignment:
Q  210 atacctatacaagggttatacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaag 308  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||| |  ||||||| ||||||||||| |||||||| |||| |||||||||||    
T  30194 atacctatacaagggttatacaagttgaaagaaacattttagaatgctcaaaagggtcccctagtgcacgaagc-aaaattcagaaagtggctgactaag 30292  T
Q  309 gctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaac 399  Q
    |||||||||||||||||||  | | | || |||||||||||||||||||||| || | ||||  ||||||| | |||||||||||| ||||    
T  30293 gctcacttcgcttaagcgaaggttggctcgcttaagcgaccggcttacagaaagtttaggtttcgctcgctcacggttcgcttgagtgaac 30383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 9616 - 9167
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    ||||||||||||| |||||| ||||||||||||||||||||| |||||| | || || | |||||||||||||| ||||||| ||||||| |||||||||    
T  9616 tctacatacaactcaactactacatatatttcatatgacttaatactcc-acaactcga-caatccagaacatatacaattatttataatcatgcacata 9519  T
Q  100 catcaatttcattca-------ataaat-tata--tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccag 189  Q
    |||||||  ||||||       ||| || ||||  |||||||||  |||||||| |||||| | | || ||| |||||   ||| |||| |  ||||| |    
T  9518 catcaatcacattcatcatgttatacatatatacgtattcacttattttcatacacaatcaacaccaacatttactaatgccaatcaatccagtcaccgg 9419  T
Q  190 cttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaatt 289  Q
    ||||||||| |||| ||||| |||||| || | |||||||| ||||||||   |  ||  |||||||||||||||||||||| ||||| ||| |||| ||    
T  9418 cttgttctaataggcttctgctacctacaccaaggttatactagttaaagaggaagttacagaatgctcaagaagtcccctcatgcactaagtaaaagtt 9319  T
Q  290 caaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt--------- 380  Q
     | ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||             
T  9318 tagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttatgggtcgc 9220  T
Q  381 --agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 431  Q
      | |||||||||||||||||||   |||||||||||| ||||||||||||||    
T  9219 tcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 9167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 23865627 - 23866026
Alignment:
Q  1 tctacatacaacttaactaca-catatatttcatat-gacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacat 98  Q
    ||||||||||||| |||||   |||||||||||||| |||||||||||||| || |   |||||| ||||||||||||||||| ||||||||||||||||    
T  23865627 tctacatacaactcaactaatgcatatatttcatattgacttactactccgtaactc--aacaattcagaacatacacaattatttataattatgcacat 23865724  T
Q  99 acatcaatttcattcaataaattata----------tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacca 188  Q
    ||||||||  |||||   |  |||||          |||||||||  || ||||| ||||||   | || ||| ||||| | ||| |||| | ||||||     
T  23865725 acatcaatcacattcctcatgttatacatatacacgtattcacttatttacatacacaatcaataccaacatttactaataccaatcaatccaatcaccg 23865824  T
Q  189 gcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaat 288  Q
    |||||||||| |||| ||||| |||||| || | |||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || | |    
T  23865825 gcttgttctaataggcttctgctacctacaccaaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaatagt 23865924  T
Q  289 tcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcg 388  Q
    ||| ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||    
T  23865925 tcagaaaaaggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcg 23866024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 314 - 437
Target Start/End: Complemental strand, 14057271 - 14057148
Alignment:
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 413  Q
    ||||||||||||||| | ||| || ||||||||||||||| |||||| |||||||||| ||||||| | ||||||||||||||||||| |  ||||||||    
T  14057271 cttcgcttaagcgacggctagctcgcttaagcgaccggctcacagaaagtctgggttccgctcgctgacggttcgcttgagcgaacttatggcagaatca 14057172  T
Q  414 aaacggtttttcgctcacaggttc 437  Q
    ||| |||||||| ||||| |||||    
T  14057171 aaatggtttttcactcacgggttc 14057148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 314 - 437
Target Start/End: Original strand, 25111385 - 25111508
Alignment:
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 413  Q
    ||||||||||||||| |  ||||| |||||||||||| || |||||| |||||||||| ||||||| | |||||||||||||||||||||  ||||||||    
T  25111385 cttcgcttaagcgacggccagttcgcttaagcgaccgactcacagaaagtctgggttccgctcgctgacggttcgcttgagcgaacttctggcagaatca 25111484  T
Q  414 aaacggtttttcgctcacaggttc 437  Q
    ||| ||||||||||| || |||||    
T  25111485 aaatggtttttcgcttacgggttc 25111508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 19902912 - 19902808
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    ||||||||||||| |||||| ||||||||||||||||||||| |||||| | || || | |||||||||||||||||||||| ||||||| |||||||||    
T  19902912 tctacatacaactcaactactacatatatttcatatgacttaatactcc-acaactcga-caatccagaacatacacaattatttataatcatgcacata 19902815  T
Q  100 catcaat 106  Q
    |||||||    
T  19902814 catcaat 19902808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 19988045 - 19987990
Alignment:
Q  60 caatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 115  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  19988045 caatccagaacatacacaattaattacaattatgctcatacatcaatttcattcaa 19987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 392
Target Start/End: Original strand, 18613409 - 18613697
Alignment:
Q  100 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 199  Q
    |||||| |||||||||   | ||||| ||||| || ||||||||||||||||||| ||| ||||||||  ||||| |||||||| ||||  |  ||| ||    
T  18613409 catcaagttcattcaacgtagtatatgttcacatggtttcatactcaatcatctccaaa-ttcactaaactcaactaattcgattaccaagtgtttc-ag 18613506  T
Q  200 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 298  Q
    |||||||| | |   |||| || ||||||||||||| || | ||||||||  ||||||||||| | |||||| |||||||| |||||  ||||||| | |    
T  18613507 taggattcag-tgtatatataaaggttatacaagttgaaaggaacatttttaaatgctcaagaggatcccctagtgcacgaggcaaag-ttcaaaa-gtg 18613603  T
Q  299 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 392  Q
    || |||||||| ||| ||||||||||||||| | | |||| ||||||||||| |||||||||  ||  |||||| ||||||| | ||||||||||    
T  18613604 gccgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgacctgcttacagagagttggggttccgctcgctaacggttcgcttg 18613697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 24321376 - 24321252
Alignment:
Q  264 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  24321376 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 24321279  T
Q  364 ctgggttctgctcgcttagggttcgct 390  Q
    |||||||| | ||||||| || |||||    
T  24321278 ctgggttcagttcgcttacgggtcgct 24321252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 384
Target Start/End: Original strand, 21931018 - 21931187
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag--tcccctcgtgcacgaagcaaaaattcaaaaagaggctga-ctaaggct 311  Q
    ||||||| ||||||||||||| || ||||||||||||||||||| ||| |  | |||| ||| | |||||||||  |||||||| |||||| | |||||     
T  21931018 tatacaaaggttatacaagttgaaagaaacattttagaatgctc-agatggattccctagtggaggaagcaaaa--tcaaaaagtggctgaccaaaggcc 21931114  T
Q  312 cacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg 384  Q
      ||||||||||||||  | | ||||||||||||||||| ||||||||  ||  | |||||||||||| ||||    
T  21931115 ttcttcgcttaagcgaaggctggttcacttaagcgaccgacttacagagagttggtgttctgctcgctaaggg 21931187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 434
Target Start/End: Original strand, 17054009 - 17054060
Alignment:
Q  383 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  17054009 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 17054060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 20005473 - 20005423
Alignment:
Q  64 ccagaacatacacaattaattataattatgcacatacatcaatttcattca 114  Q
    |||||| ||||||||| ||| ||||| ||||||||||||||| ||||||||    
T  20005473 ccagaaaatacacaatcaatcataatcatgcacatacatcaagttcattca 20005423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 23866030 - 23866078
Alignment:
Q  383 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 431  Q
    |||||||||||||||||||   |||||||||||| ||||||||| ||||    
T  23866030 ggttcgcttgagcgaactttggacagaatcaaaatggtttttcgatcac 23866078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 102 - 359
Target Start/End: Complemental strand, 82082 - 81826
Alignment:
Q  102 tcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagta 201  Q
    |||| ||||||||| | | |||||||||||||| |||||||||||| ||| || ||||||||||||  |||||||||||||  ||||   ||||  ||||    
T  82082 tcaagttcattcaacataatatatattcacttggtttcatactcaaacatatccaaaattcactaaattcaaccaattcgactaccaatgtgtttaagta 81983  T
Q  202 ggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggc 300  Q
    |||||| | | | ||||||||||||||||||||| || ||||||||||| ||||||||| | | | |||| ||| ||||||||||| ||||||||| |||    
T  81982 ggattcag-tgcatatacaagggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctggtgtacgaagcaaaa-ttcaaaaagtggc 81885  T
Q  301 tgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 359  Q
    |||||||| |  |||||||||||||||| | | | || |||||||||||| ||||||||    
T  81884 tgactaagacctacttcgcttaagcgacggctggctcgcttaagcgaccgacttacaga 81826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 390
Target Start/End: Complemental strand, 80174 - 80072
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 387  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  80174 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 80075  T
Q  388 gct 390  Q
    |||    
T  80074 gct 80072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 100 - 416
Target Start/End: Original strand, 116052 - 116366
Alignment:
Q  100 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 199  Q
    |||||| ||||||||| | | ||||| |||||||||||||||||||||||||||||||| ||||||||  ||||| |||||||| ||||   ||||  ||    
T  116052 catcaagttcattcaacatagtatatgttcacttgatttcatactcaatcatctcaaaa-ttcactaaactcaactaattcgattaccaaggtgtttcag 116150  T
Q  200 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 298  Q
    |||||||| | |   |||| || ||||||||| ||| || ||||||||||| ||| ||||| | | |||||| |||||||| |||||  ||||||||  |    
T  116151 taggattcag-tgtgtatataaaggttatacaggttgaaagaaacattttaaaatactcaaaaggatcccctagtgcacgaggcaaag-ttcaaaaaatg 116248  T
Q  299 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 397  Q
    ||||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||  ||  || ||  ||||||| | |||||||||||||||    
T  116249 gctgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgaccggcttacagagagttgggatttcgctcgctaacggttcgcttgagcga 116347  T
Q  398 acttctaacagaatcaaaa 416  Q
    |||||| ||||||| ||||    
T  116348 acttctgacagaatgaaaa 116366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 215 - 403
Target Start/End: Complemental strand, 129393 - 129204
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaa-tgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctc 312  Q
    ||||||| ||||||||||||| |||||||||||| | || ||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| |      
T  129393 tatacaaaggttatacaagttgaaggaaacatttcaaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagacct 129295  T
Q  313 acttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttct 403  Q
     ||||||||||||||| | | | || ||||||||||||||| |||||| ||  |||||| ||||||| | ||||||||| |||||||||||    
T  129294 tcttcgcttaagcgacggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcgctaacggttcgcttaagcgaacttct 129204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 75 - 403
Target Start/End: Original strand, 65265 - 65592
Alignment:
Q  75 acaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaac 174  Q
    ||||||||| ||||| || |  || |||||| ||||||||| | | |||||||||||||| |||||||||||||||  || ||||||||||||  | |||    
T  65265 acaattaataataatcatactaatgcatcaagttcattcaacatagtatatattcacttggtttcatactcaatcaaatccaaaattcactaaacttaac 65364  T
Q  175 caattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgt 273  Q
    ||||||||| ||||   |||| ||||||||||| | | | |||| ||  |||||||||||| || ||||||||||| |||| |||| | | |||||| ||    
T  65365 caattcgattaccaatgtgttttagtaggattcag-tgcatatataaaagttatacaagttgaaagaaacattttaaaatgttcaaaaggatcccctagt 65463  T
Q  274 gcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctg 373  Q
    |||||| |||||| ||||||||| ||||||||||||    || |||||||| ||| | | |||| |||||||||||||||||||||  ||  |||||| |    
T  65464 gcacgaggcaaaa-ttcaaaaagtggctgactaaggtcttctccgcttaagtgacggctggttcgcttaagcgaccggcttacagagagttggggttccg 65562  T
Q  374 ctcgcttagggttcgcttgagcgaacttct 403  Q
    |||||| | |||||| || |||||||||||    
T  65563 ctcgctaacggttcggttaagcgaacttct 65592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 1274 - 1336
Alignment:
Q  121 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgat 183  Q
    ||||| |||||||| |||||||||||||||| || |||| |||||||  ||||||||||||||    
T  1274 tatatgttcacttggtttcatactcaatcatatccaaaactcactaaattcaaccaattcgat 1336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 265 - 437
Target Start/End: Complemental strand, 752 - 581
Alignment:
Q  265 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||||||||||||| ||    
T  752 tcccctagtgcacgacgcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacagaaagt 655  T
Q  364 ctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 437  Q
      |||||  ||||||| | ||||||||||||||||||||| ||||||| |||  | ||||||||| || |||||    
T  654 tggggtttcgctcgctgacggttcgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 7688 - 7605
Alignment:
Q  265 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||    
T  7688 tcccctagtgcacgacgcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgacc 7605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 124 - 434
Target Start/End: Original strand, 23527777 - 23528099
Alignment:
Q  124 atattcacttgatttcatactcaatcatctcaaaaattcactaacatcaacca-attcgatcaccagcttgttctagtaggattctgatacctatacaag 222  Q
    ||||||||||| ||||| || ||| |||||| || ||| ||||||| ||| || || | | |||| | |||||||| |||||||  | |||||| || ||    
T  23527777 atattcacttgctttcacacccaaacatctccaacatttactaacaccaatcatatccaaacaccggattgttctaataggatttggttacctacaccag 23527876  T
Q  223 ggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctta 322  Q
    |||||||| ||||||||   |  ||  |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| ||||||||||||    
T  23527877 ggttatactagttaaagaggaagttaaagaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgctta 23527975  T
Q  323 agcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaa 410  Q
    |||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||    
T  23527976 agcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaa 23528075  T
Q  411 tcaaaacggtttttcgctcacagg 434  Q
    | |||| |||||||||||||||||    
T  23528076 tgaaaatggtttttcgctcacagg 23528099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 22232493 - 22232436
Alignment:
Q  58 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 115  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  22232493 aacaatccagaacatacacgattaattataattatgctcatacatcaatttcattcaa 22232436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 392
Target Start/End: Complemental strand, 18408685 - 18408521
Alignment:
Q  228 tacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcactt-cgcttaagc 325  Q
    |||||||| || | ||||||| | ||||||||| | | |||||| |||||||| |||||  ||||||||| |||||||||||| ||| || |||||||||    
T  18408685 tacaagttgaaaggaacatttaaaaatgctcaaaagaatcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcattttcgcttaagc 18408588  T
Q  326 gacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 392  Q
    ||| | |||||  |||||||||||||||||||||| ||  |||||| ||||||| | ||||||||||    
T  18408587 gacggctagtttgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggttcgcttg 18408521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 19236294 - 19236374
Alignment:
Q  310 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  19236294 ctcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgggtcgct 19236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 22439369 - 22439310
Alignment:
Q  339 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 398  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||| ||| ||||||    
T  22439369 cttaagcgaccggcttacagtaagtctgggttctgctcgcttaaggttcacttaagcgaa 22439310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 371
Target Start/End: Original strand, 22460506 - 22460611
Alignment:
Q  264 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  22460506 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 22460603  T
Q  364 ctgggttc 371  Q
    ||||||||    
T  22460604 ctgggttc 22460611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 372
Target Start/End: Original strand, 34829432 - 34829539
Alignment:
Q  264 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    ||||||| ||||||||||||||  |||| ||| ||| ||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||| |||||    
T  34829432 gtcccctagtgcacgaagcaaag-ttcagaaaaaggttgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggt 34829530  T
Q  364 ctgggttct 372  Q
      |||||||    
T  34829531 tggggttct 34829539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 22467130 - 22467254
Alignment:
Q  264 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| | |||||||||||| | |||||| ||||| ||||| |||||||| ||||    
T  22467130 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagtacgcttaagcgacggctagttcgcttaaccgaccagcttacagtaggt 22467227  T
Q  364 ctgggttctgctcgcttagggttcgct 390  Q
    |||||||| | ||||||| || |||||    
T  22467228 ctgggttcagttcgcttatgggtcgct 22467254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 23527643 - 23527747
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    |||||||||||||  || || |||||| | ||||||||||||||||||| | || || || |||||||| |  ||||||||| |||||||||||||||||    
T  23527643 tctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaataatccaga-ctgacacaattatttataattatgcacata 23527740  T
Q  100 catcaat 106  Q
    |||||||    
T  23527741 catcaat 23527747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 363
Target Start/End: Original strand, 20781102 - 20781192
Alignment:
Q  272 gtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    ||||||||||||||| |||| ||| |||||||||||  || | |||||||||||||| | ||| || ||||||||||| ||| ||| |||||    
T  20781102 gtgcacgaagcaaaa-ttcagaaaaaggctgactaacacttagttcgcttaagcgacgggtagctcgcttaagcgaccagctcacacaaggt 20781192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 23112546 - 23112480
Alignment:
Q  100 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaa 167  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||||    
T  23112546 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcactaa 23112480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 20819639 - 20819689
Alignment:
Q  384 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  20819639 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20819689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 20826739 - 20826789
Alignment:
Q  384 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 434  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  20826739 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20826789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 20819456 - 20819488
Alignment:
Q  213 cctatacaagggttatacaagttaaaggaaaca 245  Q
    ||||||||||||||||||||| |||||||||||    
T  20819456 cctatacaagggttatacaagctaaaggaaaca 20819488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 20826556 - 20826588
Alignment:
Q  213 cctatacaagggttatacaagttaaaggaaaca 245  Q
    ||||||||||||||||||||| |||||||||||    
T  20826556 cctatacaagggttatacaagctaaaggaaaca 20826588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 28890058 - 28889978
Alignment:
Q  310 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28890058 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28889978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 28896762 - 28896682
Alignment:
Q  310 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28896762 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28896682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 28910010 - 28909930
Alignment:
Q  310 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28910010 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28909930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 28931702 - 28931622
Alignment:
Q  310 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28931702 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28931622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 28946405 - 28946325
Alignment:
Q  310 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28946405 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28946325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 438
Target Start/End: Complemental strand, 15856 - 15521
Alignment:
Q  100 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 199  Q
    |||||| ||||||||| | | ||||| |||||||| ||||||||||||||||||| ||| ||||||||  ||||| |||||||| ||||   ||||  ||    
T  15856 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctccaaa-ttcactaaactcaactaattcgattaccaaagtgtttcag 15758  T
Q  200 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 298  Q
    || ||||| | | | |||| || ||||||||||||| || ||||||||||  ||||||||| | | || ||| |||||||| || ||| ||| ||||| |    
T  15757 tatgattcag-tgcatatataaaggttatacaagttgaaagaaacatttttaaatgctcaaaaggatctcctagtgcacgaggc-aaagttc-aaaagtg 15661  T
Q  299 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 397  Q
    ||||||||||| ||| ||||||||||||||| | | |||| |||||||||||| |||| |||  || ||||||  | ||||| | |||||||||||||||    
T  15660 gctgactaagg-tcatcttcgcttaagcgacggttggttcgcttaagcgaccgtcttatagagagtttgggtttcgttcgctaacggttcgcttgagcga 15562  T
Q  398 acttctaacagaatcaaaacggtttttcgctcacaggttct 438  Q
    |||||| ||| |||  ||| | ||||||||| || ||||||    
T  15561 acttctgacataatggaaatgatttttcgcttacgggttct 15521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 298 - 431
Target Start/End: Complemental strand, 15121 - 14977
Alignment:
Q  298 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggtt 386  Q
    ||||||||||||  ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||| ||||||||           | ||||    
T  15121 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcagctcgcttacggttcgctcacggtt 15022  T
Q  387 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 431  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  15021 cgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 14977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 215 - 359
Target Start/End: Original strand, 1117 - 1261
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| | |     
T  1117 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagaccct 1215  T
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 359  Q
    ||||||||||||||| | | | || ||||||||||||||| |||||    
T  1216 cttcgcttaagcgacggctggctcgcttaagcgaccggctcacaga 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 437
Target Start/End: Original strand, 18712098 - 18712270
Alignment:
Q  265 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    |||||| |||||||| |||||| ||||||| | |||||||||||| ||| ||||||||||||||| | |||||| ||||||||||| |||||||||| ||    
T  18712098 tcccctagtgcacgaggcaaaagttcaaaaggtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccagcttacagaaagt 18712196  T
Q  364 ctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 437  Q
      |||||| ||||||| | ||| ||||| ||||||||||| ||||||| |||  | ||||||||| || |||||    
T  18712197 tggggttccgctcgctaacggtacgcttaagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 18712270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 41111214 - 41111354
Alignment:
Q  250 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  41111214 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 41111312  T
Q  350 ggcttacagaagg-tctgggttctgctcgcttagggttcgct 390  Q
     |||||||| ||| ||||||||| | ||||||| || |||||    
T  41111313 agcttacagtaggttctgggttcagttcgcttacgggtcgct 41111354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 20941714 - 20941657
Alignment:
Q  58 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20941714 aacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 20941657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 21710167 - 21710292
Alignment:
Q  264 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    ||||||| ||| ||||||||| | |||  ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  21710167 gtcccctagtgtacgaagcaaga-ttcggaaaaaggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 21710265  T
Q  364 ctgggttctgctcgcttagggttcgct 390  Q
    |||||||| | ||||||| ||||||||    
T  21710266 ctgggttcagttcgcttatggttcgct 21710292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 349
Target Start/End: Original strand, 19961472 - 19961622
Alignment:
Q  198 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 296  Q
    ||||||||| |||| ||||||||||||||||||||| |||| ||||||  | | ||| ||||| | | |||||| ||||||||||||||  |||| | ||    
T  19961472 agtaggatt-tgatgcctatacaagggttatacaagctaaaagaaacacgtaaaaatactcaaaagggtcccctagtgcacgaagcaaag-ttcagatag 19961569  T
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    |||||||||||||||||  ||||||||||||  | ||| || |||||||||||    
T  19961570 aggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgacc 19961622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 386
Target Start/End: Complemental strand, 22030504 - 22030333
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    ||||||| ||||||||||||| || |||||||| |||||||||||| | | |  ||| ||||| |||||||||||| |||||| ||||||||||| |       
T  22030504 tatacaaaggttatacaagttgaaagaaacattatagaatgctcaaaaggatttcctagtgcaagaagcaaaaatt-aaaaagtggctgactaagacctt 22030406  T
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 386  Q
    ||||||||||||||  | | | || |||||||||| ||||||||||  ||  | |||||||||||| ||||||    
T  22030405 cttcgcttaagcgaaggctggctcgcttaagcgactggcttacagagagttggtgttctgctcgctaagggtt 22030333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 20851838 - 20851714
Alignment:
Q  264 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  20851838 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 20851741  T
Q  364 ctgggttctgctcgcttagggttcgct 390  Q
    |||||||| | ||||||| || |||||    
T  20851740 ctgggttcagttcgcttatgggtcgct 20851714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 21705625 - 21705749
Alignment:
Q  264 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  21705625 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 21705722  T
Q  364 ctgggttctgctcgcttagggttcgct 390  Q
    |||||||| | ||||||| || |||||    
T  21705723 ctgggttcagttcgcttacgggtcgct 21705749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 41111008 - 41111112
Alignment:
Q  1 tctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacata 99  Q
    |||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| |||||||||||||||||    
T  41111008 tctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataattatgcacata 41111105  T
Q  100 catcaat 106  Q
    |||||||    
T  41111106 catcaat 41111112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 20858434 - 20858341
Alignment:
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  20858434 aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 20858341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 100 - 328
Target Start/End: Original strand, 11157328 - 11157554
Alignment:
Q  100 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 199  Q
    |||||| ||||||||| | | ||||| |||||||| ||||||||||||||||||  ||| ||||||||  || || |||||||| ||||   ||||  ||    
T  11157328 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatcttcaaa-ttcactaaactcgactaattcgattaccaaagtgtttcag 11157426  T
Q  200 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 298  Q
    |||||||  | |   |||| |||||||||||||||| || ||||||||||  ||||||||| | | ||||||  ||||||| || ||| ||||||||| |    
T  11157427 taggatttag-tgtatatataagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggc-aaagttcaaaaagtg 11157524  T
Q  299 gctgactaaggctca-cttcgcttaagcgac 328  Q
    | ||||||||| ||| |||||||||||||||    
T  11157525 gttgactaagg-tcatcttcgcttaagcgac 11157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 20438327 - 20438224
Alignment:
Q  63 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 162  Q
    ||||||| ||||||||||||| ||||| |  |  || ||| || ||||||||| | | ||||| |||||||| |||||||||||||||||||  ||||||    
T  20438327 tccagaaaatacacaattaatcataatcaaactaatgcataaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattc 20438229  T
Q  163 actaa 167  Q
    |||||    
T  20438228 actaa 20438224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Original strand, 41111358 - 41111407
Alignment:
Q  383 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcaca 432  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||    
T  41111358 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 41111407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 288 - 437
Target Start/End: Complemental strand, 35010 - 34861
Alignment:
Q  288 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 386  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| |||||||||||||||||||||| ||   ||||| ||||||| | ||||    
T  35010 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttgaggttccgctcgctgacggtt 34912  T
Q  387 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 437  Q
    ||||||||||||||||| ||||||| |||  | ||||||||| || |||||    
T  34911 cgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 34861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 15633 - 15475
Alignment:
Q  265 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||  | ||| ||||||||||||| |||| |||||| ||    
T  15633 tcccctagtgcacgaggcaaat-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagctcacttaagcgactggctcacagaaagt 15536  T
Q  364 ctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggttttt 424  Q
      |||||| ||||||| | |||||||||||||||||||||  |||||| |||| |||||||    
T  15535 tggggttccgctcgctgacggttcgcttgagcgaacttctggcagaatgaaaatggttttt 15475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 424
Target Start/End: Complemental strand, 23328 - 23192
Alignment:
Q  288 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 386  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||| || ||||||| |||||| ||  ||||||  |||||| | ||||    
T  23328 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaggcaaccggctcacagaaagttggggttcaactcgctgacggtt 23230  T
Q  387 cgcttgagcgaacttctaacagaatcaaaacggttttt 424  Q
    |||||||||||||||||  |||||| |||| |||||||    
T  23229 cgcttgagcgaacttctggcagaatgaaaatggttttt 23192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 121 - 328
Target Start/End: Original strand, 1607 - 1813
Alignment:
Q  121 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 220  Q
    |||||||||||||| ||||||||||| | || || ||||||||||||  |||||||| ||||| ||||   ||||| |||||||||| |     |||| |    
T  1607 tatatattcacttggtttcatactcactgatatccaaaattcactaaattcaaccaactcgattaccaatgtgttc-agtaggattcaggggtatatata 1705  T
Q  221 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 318  Q
    | ||| ||||||||| || ||||||||||| ||||||||| | | |||||| |||||||| || ||||||||||||| |||||||||||| ||| |||||    
T  1706 aaggtcatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaggc-aaaattcaaaaagtggctgactaagg-tcatcttcg 1803  T
Q  319 cttaagcgac 328  Q
    ||||||||||    
T  1804 cttaagcgac 1813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 100 - 359
Target Start/End: Original strand, 542 - 799
Alignment:
Q  100 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 199  Q
    |||||| ||||||||| | | ||||| |||||||| | | ||||||||||||||  ||| ||||||||  ||||| |||||||| ||||   ||||  ||    
T  542 catcaagttcattcaacatagtatatgttcacttggtatgatactcaatcatcttcaaa-ttcactaaactcaactaattcgattaccaaagtgtttcag 640  T
Q  200 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 298  Q
    |||||||| | | | |||| || |||||||||| || || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| |    
T  641 taggattcag-tgcatatataaaggttatacaaattgaaagaaacattttttaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtg 738  T
Q  299 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 359  Q
    ||||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||    
T  739 gctgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgaccggcttacaga 799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 314 - 431
Target Start/End: Original strand, 6907 - 7024
Alignment:
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 413  Q
    ||||||||||||||| | ||| || |||||||||||||||||||| | |||||||||||||||||||| | ||||||||||| || | ||  ||||||||    
T  6907 cttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacgattcgcttgagcaaattcctggcagaatca 7006  T
Q  414 aaacggtttttcgctcac 431  Q
    ||| ||||  ||||||||    
T  7007 aaaaggttcctcgctcac 7024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 428
Target Start/End: Complemental strand, 4281 - 4153
Alignment:
Q  300 ctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaac 399  Q
    ||||||||||   ||||||||||||||||   |||||| ||||||||| | |||||||| | |||||||||||||||| ||| |||||||||||||||||    
T  4281 ctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgatcagcttacagtaagtctgggttctgctcgattacggttcgcttgagcgaac 4182  T
Q  400 ttctaacagaatcaaaacggtttttcgct 428  Q
    |  |  ||||||||||  |||||||||||    
T  4181 tcttggcagaatcaaattggtttttcgct 4153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 18024 - 17972
Alignment:
Q  58 aacaatccagaacatacacaattaattataattatgcacatacatcaatttca 110  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18024 aacaatccagaacatacacaattaattataattatgctcatacatcaatttca 17972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 23657 - 23605
Alignment:
Q  58 aacaatccagaacatacacaattaattataattatgcacatacatcaatttca 110  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23657 aacaatccagaacatacacaattaattataattatgctcatacatcaatttca 23605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 228 - 392
Target Start/End: Original strand, 16083 - 16247
Alignment:
Q  228 tacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagc 325  Q
    |||||||| || | ||||||| | ||||||||| | | |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||    
T  16083 tacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagc 16180  T
Q  326 gacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 392  Q
    ||| | ||| || |||||||||||||||||||||| ||  |||||| ||||||| | ||||||||||    
T  16181 gacggttagctcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggttcgcttg 16247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 4377 - 4253
Alignment:
Q  264 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    ||||||| ||||||||||||| | |||| ||| ||||||||||| ||||| |||||||||||||  | |||||| ||||||||||| |||||||| ||||    
T  4377 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacgctcagttcgcttaagcgatggctagttcgcttaagcgaccagcttacagtaggt 4280  T
Q  364 ctgggttctgctcgcttagggttcgct 390  Q
    |||||||| | ||||||| || |||||    
T  4279 ctgggttcagttcgcttacgggtcgct 4253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 100 - 400
Target Start/End: Complemental strand, 102787 - 102489
Alignment:
Q  100 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 199  Q
    |||||| ||||||||| | | ||||| |||||||| ||||||||||||||||||| ||| || |||||  ||||| |||||||| ||||   ||||   |    
T  102787 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctccaaattt-actaaactcaactaattcgattaccaaggtgtttctg 102689  T
Q  200 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 298  Q
    ||||| || | |   |||| || ||||||||| ||| || ||||| ||||| ||| ||||| | | |||||| |||||||| ||||   ||||||||| |    
T  102688 taggactcag-tgtgtatataaaggttatacaggttgaaagaaaccttttaaaatactcaaaaggatcccctagtgcacgaggcaagg-ttcaaaaagtg 102591  T
Q  299 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 397  Q
    || |||||||| ||| ||||||||||||||  | | |||| |||||||||||| ||||||||| ||  |||||| ||||||| | |||||||||||||||    
T  102590 gccgactaagg-tcatcttcgcttaagcgatggctggttcgcttaagcgaccgacttacagaaagttggggttccgctcgctgacggttcgcttgagcga 102492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 1584 - 1527
Alignment:
Q  58 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 115  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  1584 aacaatccagaacatacacaattaattaaaattatgctcatacatcaatttcattcaa 1527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 174524 - 174440
Alignment:
Q  21 acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacatacatcaat 106  Q
    |||||| ||||| |||||||||| ||||| || | | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  174524 acatatttttcaaatgacttactgctccgcaact-caaacaatccagaacatacacaattatttataattatgcacatacatcaat 174440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 349
Target Start/End: Complemental strand, 493800 - 493650
Alignment:
Q  198 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 296  Q
    ||||||||| |||| |||||||||| |||||||||| |||| ||||||||| | ||| ||||| | | |||||| |||||||||||||   |||| |||     
T  493800 agtaggatt-tgatgcctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaaa 493703  T
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    ||||||||||||||||| |||||||||||||  | ||| || |||||||||||    
T  493702 aggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgacc 493650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 359
Target Start/End: Original strand, 525062 - 525205
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag--tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctc 312  Q
    ||||||| ||||||||||||| || ||||||||| ||||||||| ||| |  | |||| ||||| ||| |||||  |||||| | ||||||| |||||      
T  525062 tatacaaaggttatacaagttgaaagaaacatttcagaatgctc-agatggattccctagtgcaggaaacaaaa--tcaaaatgtggctgaccaaggcct 525158  T
Q  313 acttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 359  Q
     ||||||||||||||  | | |||| |||||||||||| ||||||||    
T  525159 tcttcgcttaagcgaaggctggttcgcttaagcgaccgtcttacaga 525205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 288 - 392
Target Start/End: Complemental strand, 3975 - 3871
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 387  Q
    ||||||||| ||||||||||||   ||||||||||||||||   |||||| ||||||||||||||||||||   |||||||||||||||  ||| |||||    
T  3975 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacagtgagtctgggttctgctcaattacggttc 3876  T
Q  388 gcttg 392  Q
    |||||    
T  3875 gcttg 3871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 241 - 392
Target Start/End: Original strand, 17492 - 17643
Alignment:
Q  241 aaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcac 339  Q
    |||| ||||||||||||||| | | || ||| ||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||||||  | | | || |    
T  17492 aaaccttttagaatgctcaaaaggctcgcctagtgcacgaaacaaaa-ttcagaaagtggctgaccaaggctcacttcgcttaagcgaaggctggctcgc 17590  T
Q  340 ttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 392  Q
    ||||||||||||||||||||| || ||||||  ||||||| |  |||||||||    
T  17591 ttaagcgaccggcttacagaaagtttgggtttcgctcgctcacagttcgcttg 17643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 363
Target Start/End: Complemental strand, 24342 - 24178
Alignment:
Q  198 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 296  Q
    ||||||||| |||| |||| |||||||||||||||| |||| |||||| || | ||  ||||| | | |||||| ||||||||||||||  |||| ||||    
T  24342 agtaggatt-tgatgcctacacaagggttatacaagctaaaagaaacacttaaaaacactcaaaagggtcccctagtgcacgaagcaaag-ttcagaaag 24245  T
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    || ||||||||||||||  ||||||||||||  ||||| || ||||||||||| ||| ||| |||||    
T  24244 agactgactaaggctcatctcgcttaagcgaaggatagctcgcttaagcgaccagctcacaaaaggt 24178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 384
Target Start/End: Original strand, 121200 - 121369
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||||| |||| |||||||| ||||||||||| |       
T  121200 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagc-aaaagtcaaaaagtggctgactaagacctt 121298  T
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg 384  Q
    ||||||||||||||  | | | || ||||||| |||||||||||||  ||  | |||||||||||| ||||    
T  121299 cttcgcttaagcgaaggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgctaaggg 121369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 384
Target Start/End: Original strand, 132077 - 132246
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||||| |||| |||||||| ||||||||||| |       
T  132077 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagc-aaaagtcaaaaagtggctgactaagacctt 132175  T
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg 384  Q
    ||||||||||||||  | | | || ||||||| |||||||||||||  ||  | |||||||||||| ||||    
T  132176 cttcgcttaagcgaaggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgctaaggg 132246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 322
Target Start/End: Complemental strand, 19166 - 19059
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 313  Q
    ||||||| ||||||| ||||| || ||||||||||| ||||||||| | | |||||| ||||||||||| ||||||||||||| ||||||||||| | |     
T  19166 tatacaaaggttatataagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagc-aaaattcaaaaagtggctgactaagaccct 19068  T
Q  314 cttcgctta 322  Q
    |||||||||    
T  19067 cttcgctta 19059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 381
Target Start/End: Original strand, 72565 - 72747
Alignment:
Q  198 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 296  Q
    ||||||||| |||||| ||||||||||||||| ||| |||| | |||| ||||  || || || | | ||||||  ||||||||||||||||||| ||||    
T  72565 agtaggatt-tgatacttatacaagggttatataagctaaaaggaacactttaagatactaaaaagggtcccctaatgcacgaagcaaaaattcagaaag 72663  T
Q  297 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 381  Q
     |||||||| |||||||  ||||||||||||  | ||| || ||||||||||| ||| ||| |||||  ||||| ||||||||||    
T  72664 tggctgact-aggctcagctcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggttggggttttgctcgctta 72747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 314 - 437
Target Start/End: Complemental strand, 41236 - 41113
Alignment:
Q  314 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 413  Q
    |||||||||||||||   |||||| ||||||||| ||||| |||||||||  |||||| ||||||| |  ||||||||||||||||||| | ||||||      
T  41236 cttcgcttaagcgacgtctagttcgcttaagcgatcggctcacagaaggttggggttccgctcgctgacagttcgcttgagcgaacttcaagcagaatgt 41137  T
Q  414 aaacggtttttcgctcacaggttc 437  Q
    ||| ||||||| ||| || |||||    
T  41136 aaatggttttttgcttacgggttc 41113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 223 - 328
Target Start/End: Original strand, 51552 - 51657
Alignment:
Q  223 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 321  Q
    ||||||||||||| || ||||||||||| ||||||||| | | | |||| |||||| |||| ||||||||||||| ||||||||||| |   ||||||||    
T  51552 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacaaagc-aaaattcaaaaagtggctgactaagaccttcttcgctt 51650  T
Q  322 aagcgac 328  Q
    |||||||    
T  51651 aagcgac 51657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 349
Target Start/End: Complemental strand, 11782 - 11631
Alignment:
Q  198 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaa-tgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 295  Q
    ||||||||| |||| ||||||||||||||||||||| |||| |||| | || | || | ||||| | | |||||| ||||| ||||||||  |||| | |    
T  11782 agtaggatt-tgatgcctatacaagggttatacaagctaaaagaaaaacttaaaaaatactcaaaagggtcccctagtgcatgaagcaaag-ttcagata 11685  T
Q  296 gaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    ||||||||||||||||||  ||||||||||||  | |||||| |||||||||||    
T  11684 gaggctgactaaggctcagctcgcttaagcgaagggtagttcgcttaagcgacc 11631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 399
Target Start/End: Complemental strand, 3966 - 3831
Alignment:
Q  264 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 363  Q
    ||||||| |||||||||||||   |||||||| ||||||||||| ||||| |||||||||||||  | ||| || ||||||||||| ||| ||| || ||    
T  3966 gtcccctagtgcacgaagcaagg-ttcaaaaaaaggctgactaatgctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaagt 3868  T
Q  364 ctgggttct-gctcgcttagggttcgcttgagcgaac 399  Q
       ||| || ||||||| | |||||||||||||||||    
T  3867 tgaggtcctcgctcgctcacggttcgcttgagcgaac 3831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 10053 - 9950
Alignment:
Q  63 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 162  Q
    ||||||| ||||||||||||||||||| |  |  || |||||| |||||| || | | ||||| |||||||| |||||||||||||||||||  ||||||    
T  10053 tccagaaaatacacaattaattataatcaaactaatgcatcaagttcattaaacatagtatatgttcacttggtttcatactcaatcatctc-caaattc 9955  T
Q  163 actaa 167  Q
    |||||    
T  9954 actaa 9950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 327
Target Start/End: Complemental strand, 11324 - 11196
Alignment:
Q  198 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 296  Q
    ||||||||| |||| |||||||||| |||||||||| ||||  ||||| || | | | ||||| | | |||||| |||||||||||||   |||| |||     
T  11324 agtaggatt-tgatgcctatacaagagttatacaagctaaaataaacacttaaaagtactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaaa 11227  T
Q  297 aggctgactaaggctcacttcgcttaagcga 327  Q
    ||||||||||||||||| |||||||||||||    
T  11226 aggctgactaaggctcagttcgcttaagcga 11196  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 18060 - 18121
Alignment:
Q  288 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 349  Q
    |||| ||| ||||||||||||||||| ||||||||||||| || ||| || |||||||||||    
T  18060 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaaaggtagctcgcttaagcgacc 18121  T

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Target: scaffold0169 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 6299 - 6343
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctca 259  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||    
T  6299 tatacaaaggttatacaagttgaaagaaacattttagaatgctca 6343  T

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Target: scaffold1427 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 1207 - 1273
Alignment:
Q  100 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaa 167  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||||    
T  1207 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcactaa 1273  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 134867 - 134924
Alignment:
Q  333 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 390  Q
    ||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  134867 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 134924  T

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Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 134820 - 134882
Alignment:
Q  264 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 328  Q
    ||||||| ||||||||||||| | |||| ||| ||||||||||| ||||| ||||||||||||||    
T  134820 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacgctcagttcgcttaagcgac 134882  T

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Target: scaffold0924 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 1391 - 1343
Alignment:
Q  383 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 431  Q
    |||||||||||||||||||   ||||||||||||  |||||||||||||    
T  1391 ggttcgcttgagcgaactttggacagaatcaaaattgtttttcgctcac 1343  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 3372 - 3328
Alignment:
Q  215 tatacaagggttatacaagttaaaggaaacattttagaatgctca 259  Q
    ||||||| ||||||||||||| || ||||||||| ||||||||||    
T  3372 tatacaaaggttatacaagttgaaagaaacatttcagaatgctca 3328  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 49597 - 49645
Alignment:
Q  383 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 431  Q
    |||||| ||||||||||||   |||||||||||| ||||||||||||||    
T  49597 ggttcgattgagcgaactttggacagaatcaaaatggtttttcgctcac 49645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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