View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468_low_6 (Length: 436)
Name: NF5468_low_6
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 49267956 - 49267539
Alignment:
| Q |
1 |
tttggtccctaaatctgcgaggcaatgtcattatagaccttcaatgtatcaaaaaacttcaaaaatattcatgaatgtttcttctattagcaattttatg |
100 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49267956 |
tttggtccctaaatctgtgaggcaatgtcattatagtccttcaatgtatcaaaaaacttcaaaaatattcatgaatgtttcttctattagtaattttatg |
49267857 |
T |
|
| Q |
101 |
gaccaacgaacaaagtacacattcgatatcaaacttgttggtgagtccagaggagtgccaggagcagcaacgagccaatgctctaggaccacccaaaatc |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49267856 |
gaccaacaaacaaagtacacattcgatatcaaacttgttggtgagtccagaggagtgccaggagcagcaacgagccaatgctctaggaccacccaaaatc |
49267757 |
T |
|
| Q |
201 |
ttaaggcattaggtatataggtcacctatcttatatccaatattttacccattcatatgccctcacacttgaactcaacaatctctccctcaactacgag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49267756 |
ttaaggcattaggtatataggtcacctatcttatatccaatattttacccattcataggccctcacacttgaactcaacaatctctccctcaactacgag |
49267657 |
T |
|
| Q |
301 |
ttcccatctcctataattgatccaaacaccaggatcccctcccactccccaacatgccaacgctccaaggccacgagagagacgccacatccccacccaa |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49267656 |
ttcccatctcctataattgacccaaacaccaggatcccctcccactccccaacatgccaacgctccaaggccacgagagagacgccacatccccacccaa |
49267557 |
T |
|
| Q |
401 |
aactttaagacattaggc |
418 |
Q |
| |
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|||||||||||||||||| |
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| T |
49267556 |
aactttaagacattaggc |
49267539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 11766034 - 11766102
Alignment:
| Q |
189 |
ccacccaaaatcttaaggcattaggtatataggtcacctatcttat--atccaatattttacccattca |
255 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| || |||||| |||||| |||||||||||||| |
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| T |
11766034 |
ccacccaaaaccttaaggcattaggttaataggtcaactctcttataaatccaacattttacccattca |
11766102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 11200024 - 11199954
Alignment:
| Q |
189 |
ccacccaaaatcttaaggcattaggtatataggtcacctatct--tatatccaatattttacccattcata |
257 |
Q |
| |
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|||||||||| |||||||||||||| |||| ||||||| ||| ||||||||| |||||||| ||||||| |
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| T |
11200024 |
ccacccaaaaccttaaggcattaggcatatgagtcacctctcttatatatccaacattttacctattcata |
11199954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 38637611 - 38637564
Alignment:
| Q |
189 |
ccacccaaaatcttaaggcattaggtatataggtcacctatcttatat |
236 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||| ||||||| |
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| T |
38637611 |
ccacccaataccttaaggcattaggtatataggtcacctcacttatat |
38637564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 10066632 - 10066585
Alignment:
| Q |
189 |
ccacccaaaatcttaaggcattaggtatataggtcacctatcttatat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || |||||||||||| |
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|
| T |
10066632 |
ccacccaaaatcttaaggcattaggtatatggatctcctatcttatat |
10066585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 27487156 - 27487205
Alignment:
| Q |
289 |
ctcaactacgagttcccatctcctataattgatccaaacaccaggatccc |
338 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||| || ||||| |
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| T |
27487156 |
ctcaactatgagttcccatctcctatatttgatccaaacactagaatccc |
27487205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 27856230 - 27856160
Alignment:
| Q |
189 |
ccacccaaaatcttaaggcattaggtatataggtcacctatct--tatatccaatattttacccattcata |
257 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||| ||| ||||||||| |||||||||||||||| |
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|
| T |
27856230 |
ccacccaaaactttaaggcattaggtatatgagccacctctcttatatatccaacattttacccattcata |
27856160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 28296084 - 28296154
Alignment:
| Q |
189 |
ccacccaaaatcttaaggcattaggtatataggtcacctatcttat--atccaatattttacccattcata |
257 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||||| |||||| || ||||||||||| |||||||| |
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| T |
28296084 |
ccacccaaaaccttaagagattaggtatatgggtcacctctcttatacattcaatattttactcattcata |
28296154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 218
Target Start/End: Complemental strand, 40196342 - 40196313
Alignment:
| Q |
189 |
ccacccaaaatcttaaggcattaggtatat |
218 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
40196342 |
ccacccaaaatcttaaggcattaggtatat |
40196313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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