View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468_low_7 (Length: 430)
Name: NF5468_low_7
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 4638456 - 4638518
Alignment:
| Q |
250 |
gaaccctgaccttgaaaattaatggcaaacgaaccagaggaagaagatgaattacaaccttag |
312 |
Q |
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| T |
4638456 |
gaaccctgaccttgaaaattaatggcaaacgaacctgaggaagaagatgaattacaaccttag |
4638518 |
T |
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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 430
Target Start/End: Original strand, 4638590 - 4638644
Alignment:
| Q |
376 |
ggaaccggaccagaacctgttgtggagaaagaaaagggtaccggactcaagtgat |
430 |
Q |
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| T |
4638590 |
ggaaccagaccagaacctgttgtggagaaagaaaagggaaccggactcaagtgat |
4638644 |
T |
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