View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5468_low_9 (Length: 395)
Name: NF5468_low_9
Description: NF5468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5468_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 64 - 378
Target Start/End: Original strand, 29179009 - 29179329
Alignment:
| Q |
64 |
cttcctcatacaaatagtatttttctatagttattaaaatcaatctaattaatg----taatggaaatat--gtttcagaagcagcatgtgtgggaggga |
157 |
Q |
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| T |
29179009 |
cttcctcatagaaatagtatttttctatagttattaaaatcaatctaattaatgaatgtaatggaaatatatgtttcagaagcagcatgtgtgggaggga |
29179108 |
T |
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| Q |
158 |
aagagtggtatttctacacacaaagagaccgtaaatatgcaacaggactacgaacaaatcgtgcaactgcatcaggttattggaaagcaacaggaaagga |
257 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29179109 |
aagagtggtatttctacacacaaagagatcgtaaatatgcaacaggactacgaacaaatcgtgcaactgcatcaggttattggaaagcaacaggaaagga |
29179208 |
T |
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| Q |
258 |
cagagctatccttcgtaagggcactcttgttggaatgagaaagactttagtgttctatcaaggaagggcacctaaagggagaaaaactgaatgggttatg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29179209 |
cagagctatccttcgtaagggcactcttgttggaatgagaaagactttagtgttctatcaaggaagggcacctaaagggagaaaaactgaatgggttatg |
29179308 |
T |
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| Q |
358 |
catgagtttcgtattgagggt |
378 |
Q |
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||||||||||||||||||||| |
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| T |
29179309 |
catgagtttcgtattgagggt |
29179329 |
T |
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