View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5469-Insertion-1 (Length: 887)

Name: NF5469-Insertion-1
Description: NF5469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5469-Insertion-1
NF5469-Insertion-1
[»] chr7 (14 HSPs)
chr7 (197-882)||(38109710-38110404)
chr7 (96-182)||(38110393-38110479)
chr7 (8-90)||(38112695-38112777)
chr7 (313-418)||(29357790-29357895)
chr7 (322-425)||(44662456-44662559)
chr7 (322-418)||(9992609-9992703)
chr7 (328-425)||(46195923-46196020)
chr7 (347-423)||(6548707-6548782)
chr7 (346-442)||(13295351-13295447)
chr7 (322-418)||(23602273-23602369)
chr7 (323-418)||(5228071-5228165)
chr7 (323-418)||(24029985-24030080)
chr7 (323-418)||(40273821-40273916)
chr7 (323-442)||(48433686-48433805)
[»] chr2 (5 HSPs)
chr2 (321-425)||(24202148-24202252)
chr2 (323-423)||(43684279-43684378)
chr2 (323-442)||(29090416-29090534)
chr2 (323-442)||(33065233-33065352)
chr2 (321-442)||(36755620-36755741)
[»] chr6 (5 HSPs)
chr6 (328-418)||(7164700-7164789)
chr6 (323-442)||(6228236-6228355)
chr6 (323-442)||(17216958-17217077)
chr6 (335-418)||(9455852-9455934)
chr6 (337-418)||(8330491-8330572)
[»] chr1 (10 HSPs)
chr1 (345-418)||(41160865-41160938)
chr1 (323-442)||(15417793-15417912)
chr1 (323-434)||(14262705-14262816)
chr1 (328-439)||(50065015-50065126)
chr1 (328-418)||(19424051-19424141)
chr1 (323-431)||(24134611-24134719)
chr1 (323-442)||(43109214-43109333)
chr1 (323-418)||(44583588-44583682)
chr1 (323-418)||(46532495-46532590)
chr1 (323-442)||(48497189-48497308)
[»] chr8 (6 HSPs)
chr8 (328-442)||(38289211-38289325)
chr8 (323-418)||(39172213-39172307)
chr8 (338-418)||(30659968-30660048)
chr8 (323-418)||(10621375-10621470)
chr8 (323-442)||(22652683-22652802)
chr8 (323-397)||(45536718-45536792)
[»] chr4 (8 HSPs)
chr4 (360-442)||(2824629-2824711)
chr4 (328-442)||(11491195-11491309)
chr4 (323-442)||(16556451-16556570)
chr4 (323-442)||(37574273-37574391)
chr4 (323-442)||(50815707-50815826)
chr4 (345-442)||(2766734-2766831)
chr4 (323-431)||(46283122-46283230)
chr4 (375-418)||(56555600-56555643)
[»] chr3 (2 HSPs)
chr3 (319-418)||(9489473-9489572)
chr3 (332-425)||(48717422-48717515)
[»] chr5 (3 HSPs)
chr5 (323-433)||(43227866-43227976)
chr5 (323-431)||(31250147-31250255)
chr5 (323-418)||(38503257-38503352)
[»] scaffold0001 (1 HSPs)
scaffold0001 (323-442)||(419712-419831)


Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 197 - 882
Target Start/End: Complemental strand, 38110404 - 38109710
Alignment:
Q  197 atacttaaaacctgccttcgctattaagcatttgtttttggaattttctaatgcattgaaattttaattcc-ttatagtaacttactctataattgttgc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  38110404 atacttaaaacctgccttcgctattaagcatttgtttttggaattttctaatgcattgaaattttaattcccttttagtaacttactctataattgttgc 38110305  T
Q  296 tctaacagcatgaaacatttcgtctcgtgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactcca 395  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||| ||| |||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  38110304 tctaaaagcatgaaatatttcgtctcgtgagcttagctcatttggtaagggataatgcaatatgtatgc-gaggctggagttcgaacctcgaacactcca 38110206  T
Q  396 ctatttcacctttaaggtgaattcctccagtcactaagccacttgacnnnnnnnnn------catgaaatatttcttatgtacactaatttgattacaaa 489  Q
    |||||||||||||||| |||||| ||| |||||||| ||||||| ||               ||||||||||||| |||||||||||||||||| |||||    
T  38110205 ctatttcacctttaagatgaatttctctagtcactaggccacttaacaaaaaaaaaaaaaaacatgaaatatttcctatgtacactaatttgatgacaaa 38110106  T
Q  490 tcattctctaaagtaaatcccataatgaaaagaaaatgcatttatagtcattcggctactttataccatacccccaataatcatt-acttactcaaaatg 588  Q
    ||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  38110105 tcattctc------aaatcccataatgaaaagaaaatgcatttatagtcattcggctactttataccatacccccaataatcatttacttactcaaa-tg 38110013  T
Q  589 tta--------taaaaatagcaaagcagaaaagatcacaagtaccatatgagaggacacataaggaaactttattaaatcaaattcctaaagtttcattt 680  Q
    |||        |||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  38110012 ttaaggacacataaaaataacaaagcagaaaagatcacaagtaccatatgagagaacacgtaaggaaactttattaaatcaaattcctaaagtttcattt 38109913  T
Q  681 agattctttatgtaaatgtaaagcataaaaaagtgttccccttctttatttcacactttcttttttgtcgctataagccattctctagtgacttttcaac 780  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  38109912 agattctttatgtaaatgtaaagcataaaaaagcgttccccttctttatttcacactttct-ttttgtcgctataagccattctctagtgacttttccac 38109814  T
Q  781 ccaaagaaacaaaccaattcagca-ttaaatattgacatttgatcaacaaaactcatcacaatatctt-aaacaatggcacagagaagcattgagatgct 878  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38109813 ccaaagaaacaaaccaattcagcatttaaatattgacatttgatcaccaaaactcatcacaatatcttaaaacaatggcacagagaagcattgagatgct 38109714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 38110479 - 38110393
Alignment:
Q  96 tggcttgtgtgtaaacgtccaaattagtaaaaatccaaaagttgttcgaataaagtattgcatgttagatggggcatacttaaaacc 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38110479 tggcttgtgtgtaaacgtccaaattagtaaaaatccaaaagttgttcgaataaagtattgcatgttagatggggcatacttaaaacc 38110393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 38112777 - 38112695
Alignment:
Q  8 aaattatctgttattaatcagcttatttacaatcaactataaattcattcactatctgttattcactcctttgtaccaactag 90  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  38112777 aaattatctgttattaattagcttatttacaatcaactataaattcatccactatctgttatccactcctttgtaccaactag 38112695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 313 - 418
Target Start/End: Original strand, 29357790 - 29357895
Alignment:
Q  313 tttcgtctc-gtgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaag 411  Q
    ||||||||| ||||| |||||||| ||||||| |||||||||| ||| |||| || ||||||||||||||||  | ||||||||||||||||||||||||    
T  29357790 tttcgtctccgtgagcttagctcacttgataagggataatgcattatatatgcag-ggccggagttcgaaccctggacactccactatttcacctttaag 29357888  T
Q  412 gtgaatt 418  Q
    |||||||    
T  29357889 gtgaatt 29357895  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 322 - 425
Target Start/End: Complemental strand, 44662559 - 44662456
Alignment:
Q  322 gtgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcct 421  Q
    ||||| |||||||| | | ||| |||||||||| |||||||| || |||||| ||||||||| || |||| |||||||||||||||||||||||||| ||    
T  44662559 gtgagcttagctcactaggtaagggataatgcattatgtatgcaggggccggggttcgaaccccggacaccccactatttcacctttaaggtgaatttct 44662460  T
Q  422 ccag 425  Q
    ||||    
T  44662459 ccag 44662456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 9992609 - 9992703
Alignment:
Q  322 gtgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    ||||| |||||||||||||||| |||||||||| |||||||||||||  ||| ||||||||| ||||||| ||| |||||||||||| |||||||||    
T  9992609 gtgagcttagctcatttgataagggataatgcattatgtatgtagagatcggggttcgaaccccgaacacccca-tatttcaccttt-aggtgaatt 9992703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 328 - 425
Target Start/End: Original strand, 46195923 - 46196020
Alignment:
Q  328 ttagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctccag 425  Q
    |||||| | ||||||| |||||||| | |||||||| || || ||| ||| ||||| || |||| |||||||||||||||||||||||||| ||||||    
T  46195923 ttagcttacttgataagggataatgtattatgtatgcaggggtcggggtttgaaccccggacaccccactatttcacctttaaggtgaatttctccag 46196020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 423
Target Start/End: Complemental strand, 6548782 - 6548707
Alignment:
Q  347 ataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctcc 423  Q
    |||||||| |||||||| || |||||| ||||||||  || |||| |||||||||||||||||||||||||| ||||    
T  6548782 ataatgcattatgtatgcag-ggccggggttcgaactccggacaccccactatttcacctttaaggtgaatttctcc 6548707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 346 - 442
Target Start/End: Complemental strand, 13295447 - 13295351
Alignment:
Q  346 gataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctccagtcactaagccacttgac 442  Q
    ||||||| | ||||||||||| || ||| |||||||||||| | |   || |||||||||||||||||||||| |||||| | ||| || |||||||    
T  13295447 gataatgtattatgtatgtaggggtcggggttcgaacctcggatatctcattatttcacctttaaggtgaatttctccagccgctaggctacttgac 13295351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 23602273 - 23602369
Alignment:
Q  322 gtgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    ||||| |||||||||||||||| | ||||||||   | |||| || | |||||||||||||| || ||||  ||||  |||||||||||||||||||    
T  23602273 gtgagcttagctcatttgataaggaataatgcatattatatgcagtgaccggagttcgaaccccggacacctcacttattcacctttaaggtgaatt 23602369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 418
Target Start/End: Original strand, 5228071 - 5228165
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||| |||||||| ||||||||||||||||| || | |||| || |||||| ||||||| |  | |||| |||||  |||||||||||||||||||    
T  5228071 tgagcttagctcacttgataaaggataatgc-atttttatgcaggggccggggttcgaatcctggacaccccacttattcacctttaaggtgaatt 5228165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 418
Target Start/End: Original strand, 24029985 - 24030080
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||| |||||||||||||||| ||||||||||  || | ||||| |||||| ||||||||| |  |||| ||| |  |||| ||||||||||||||    
T  24029985 tgagtttagctcatttgataagggataatgcacaatatgtgtaggggccggggttcgaaccccagacaccccatttattcatctttaaggtgaatt 24030080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 418
Target Start/End: Original strand, 40273821 - 40273916
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||| |||||||||||| ||| ||||||||||  || | || || |||||| ||||||||| || |||| |||||  |||| ||||||||||||||    
T  40273821 tgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatt 40273916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 442
Target Start/End: Complemental strand, 48433805 - 48433686
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||| ||||||||||  || | || || |||||| |||| |||| || |||| |||||  |||| |||||||||||||| |||    
T  48433805 tgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcaaaccccggacaccccacttattcatctttaaggtgaatttctc 48433706  T
Q  423 cagtcactaagccacttgac 442  Q
     || ||||| || |||||||    
T  48433705 tagccactaggctacttgac 48433686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 321 - 425
Target Start/End: Original strand, 24202148 - 24202252
Alignment:
Q  321 cgtgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcc 420  Q
    |||||| |||||||| ||| ||| |||||||||| |||||||| || |||||| ||||||||| || |||| |||||||||||||||||||||||||| |    
T  24202148 cgtgagcttagctcacttggtaagggataatgcattatgtatgcaggggccggggttcgaaccccggacaccccactatttcacctttaaggtgaatttc 24202247  T
Q  421 tccag 425  Q
    |||||    
T  24202248 tccag 24202252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 323 - 423
Target Start/End: Original strand, 43684279 - 43684378
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||| |||||||||| | |||||| || ||| |  ||||||||| ||||||| |||||  ||||||||||||||||||| |||    
T  43684279 tgagcttagctcatttggtaagggataatgcatt-tgtatgcaggggctgaggttcgaaccccgaacaccccacttattcacctttaaggtgaatttctc 43684377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 442
Target Start/End: Original strand, 29090416 - 29090534
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| ||||||||| |||||| |||||||||| | | |||  || |||||||||||||||| || ||||  ||||  |||| |||||||||||||| |||    
T  29090416 tgagcttagctcatatgataagggataatgcatt-tatatacaggggccggagttcgaaccccggacacctcacttattcatctttaaggtgaatttctc 29090514  T
Q  423 cagtcactaagccacttgac 442  Q
    ||| | ||| || |||||||    
T  29090515 cagccgctaggctacttgac 29090534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 442
Target Start/End: Complemental strand, 33065352 - 33065233
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| ||||||||||||  || ||||||||||  |||| ||||| || ||| ||||||||  ||||||| | |||  |||| |||||||||||||| |||    
T  33065352 tgagcttagctcatttggcaagggataatgcacaatgtgtgtaggggtcggggttcgaactccgaacaccctacttattcatctttaaggtgaatttctc 33065253  T
Q  423 cagtcactaagccacttgac 442  Q
     || ||||| || |||||||    
T  33065252 tagccactaggctacttgac 33065233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 442
Target Start/End: Original strand, 36755620 - 36755741
Alignment:
Q  321 cgtgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcc 420  Q
    |||||| ||| |||| ||| ||| |||||||| | ||| ||| ||| || ||| ||| ||||| || |||| | ||||||||||||||||||||| || |    
T  36755620 cgtgagcttaactcacttggtaagggataatggattatatatataggggtcggggtttgaaccccggacacccaactatttcacctttaaggtgactttc 36755719  T
Q  421 tccagtcactaagccacttgac 442  Q
    ||| ||| ||| || |||||||    
T  36755720 tccggtcgctaggctacttgac 36755741  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 328 - 418
Target Start/End: Original strand, 7164700 - 7164789
Alignment:
Q  328 ttagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||||||||||||||| |||||||||| | | ||||||| |||||||||||||||| ||| ||| |||||  |||||||||||||||||||    
T  7164700 ttagctcatttgataagggataatgcatt-tatatgtaggggccggagttcgaaccccgaccaccccacttattcacctttaaggtgaatt 7164789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 323 - 442
Target Start/End: Complemental strand, 6228355 - 6228236
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||| ||||||||||  || | || || |||||| ||||||||| || |||| |||||  |||| |||||||||||||| |||    
T  6228355 tgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctc 6228256  T
Q  423 cagtcactaagccacttgac 442  Q
     || ||||| || |||||||    
T  6228255 tagccactaggctacttgac 6228236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 323 - 442
Target Start/End: Original strand, 17216958 - 17217077
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||| ||||||||||  || | ||||| || ||||||||||||  || |||| |||||  |||| |||||||||||||| |||    
T  17216958 tgagcttagctcatttggtaagggataatgcataatatgtgtaggggtcggagttcgaactccggacaccccacttattcatctttaaggtgaatttctc 17217057  T
Q  423 cagtcactaagccacttgac 442  Q
     || ||||| || |||||||    
T  17217058 tagccactaggctacttgac 17217077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 418
Target Start/End: Original strand, 9455852 - 9455934
Alignment:
Q  335 atttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    ||||| ||| |||||||||| | ||||||||| || ||||||||||||| | ||||| |||||  |||||||||||| ||||||    
T  9455852 atttggtaagggataatgcatt-tgtatgtaggggtcggagttcgaaccccaaacaccccacttattcacctttaagttgaatt 9455934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 418
Target Start/End: Complemental strand, 8330572 - 8330491
Alignment:
Q  337 ttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    ||||||||||||||| ||   | ||||||| | |||||||||||| |   |||||||||||  |||||||||||||||||||    
T  8330572 ttgataaaggataatacatattatatgtagggaccggagttcgaagccaaaacactccacttattcacctttaaggtgaatt 8330491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 345 - 418
Target Start/End: Original strand, 41160865 - 41160938
Alignment:
Q  345 ggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||||||||| |||||||| ||  | ||||||||||| | ||||||||||||||||||| ||||||||||||||    
T  41160865 ggataatgcattatgtatgcaggagtcggagttcgaatcccgaacactccactatttcatctttaaggtgaatt 41160938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 323 - 442
Target Start/End: Complemental strand, 15417912 - 15417793
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||||||||||||||  || | ||||| ||| || ||||||| |||| |||| |||||  |||| ||||||| |||||| |||    
T  15417912 tgagcttagctcatttggtaaaggataatgcacaatatgtgtaggggctggggttcgaagctcggacaccccacttattcatctttaagatgaatttctc 15417813  T
Q  423 cagtcactaagccacttgac 442  Q
     |||||||| || |||||||    
T  15417812 tagtcactaggctacttgac 15417793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 323 - 434
Target Start/End: Complemental strand, 14262816 - 14262705
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||||||| |||||||||||| ||||||||||  || |||| || || ||| ||||||||| || |||| | |||  |||| |||||||||||||| |||    
T  14262816 tgagattaactcatttgataagggataatgcacaatatatgcaggggtcggggttcgaaccccggacaccctacttattcatctttaaggtgaatttctc 14262717  T
Q  423 cagtcactaagc 434  Q
     || ||||||||    
T  14262716 tagccactaagc 14262705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 328 - 439
Target Start/End: Original strand, 50065015 - 50065126
Alignment:
Q  328 ttagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctccagtc 427  Q
    |||||||||||||||| ||||||||||  || | || || | |||| ||||||| |||| |||| |||||  |||| |||||||||||||| ||| || |    
T  50065015 ttagctcatttgataagggataatgcacaatatgtgcagggaccggggttcgaatctcggacaccccacttattcatctttaaggtgaatttctctagcc 50065114  T
Q  428 actaagccactt 439  Q
    ||||||| ||||    
T  50065115 actaagctactt 50065126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 328 - 418
Target Start/End: Original strand, 19424051 - 19424141
Alignment:
Q  328 ttagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||||||||||||||| ||||||||||   | |||| || || ||| ||||||||| || |||| |||||  |||||||||||||||||||    
T  19424051 ttagctcatttgataagggataatgcatattatatgcaggggtcggggttcgaaccccggacaccccacttattcacctttaaggtgaatt 19424141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 323 - 431
Target Start/End: Complemental strand, 24134719 - 24134611
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||| ||||||||||  || | || || |||||| ||||||||| || |||| |||||  |||| |||||||||||||| |||    
T  24134719 tgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctc 24134620  T
Q  423 cagtcacta 431  Q
     || |||||    
T  24134619 tagccacta 24134611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 442
Target Start/End: Complemental strand, 43109333 - 43109214
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||| ||||||||||| || | || || |||||| ||||||||| || ||||  || |  |||| |||||||||||||| |||    
T  43109333 tgagcttagctcatttggtaagggataatgcaaaatatgtgcaggggccggggttcgaaccccggacacctcatttattcatctttaaggtgaatttctc 43109234  T
Q  423 cagtcactaagccacttgac 442  Q
     || ||||| || |||||||    
T  43109233 tagccactaggctacttgac 43109214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 418
Target Start/End: Original strand, 44583588 - 44583682
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||| ||| |||||||||||| ||||||| || | ||||||||| || ||| ||||||||  || |||||||||   |||||||||||||||||||    
T  44583588 tgagcttaactcatttgataagggataatacatt-tgtatgtaggggtcggggttcgaactccggacactccacctattcacctttaaggtgaatt 44583682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 46532590 - 46532495
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||| ||| |||||||| ||| | |||||| | ||||||||  | ||||||  ||||||| ||  |||| ||||||||||||||||||||||||||    
T  46532590 tgagcttaactcatttggtaaggaataatgtattatgtatgctggggccgggattcgaacttcagacaccccactatttcacctttaaggtgaatt 46532495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 442
Target Start/End: Complemental strand, 48497308 - 48497189
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||| ||||||||||  || | || || |||||||||||||| | || |||||||| |  |||| ||||||||| |||| |||    
T  48497308 tgagtttagctcatttggtaagggataatgcacaatatgtgcaggggccggagttcgaatcccggacactccatttattcatctttaaggtaaatttctc 48497209  T
Q  423 cagtcactaagccacttgac 442  Q
     || ||||| || |||||||    
T  48497208 tagccactaggctacttgac 48497189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 328 - 442
Target Start/End: Complemental strand, 38289325 - 38289211
Alignment:
Q  328 ttagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctccagtc 427  Q
    |||||||||||| ||| ||||||||||  || | || || || ||| ||||||||||| ||||| |||||  |||| |||||||||||||| ||| || |    
T  38289325 ttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcgaacctcaaacaccccacttattcatctttaaggtgaatttctctagcc 38289226  T
Q  428 actaagccacttgac 442  Q
    ||||||| |||||||    
T  38289225 actaagctacttgac 38289211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 39172307 - 39172213
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||| ||| |||||||| |||||||||||||| | ||||||||||||||| |||||||| | || |||| ||| |  ||||||||||| |||||||    
T  39172307 tgagcttaactcatttggtaaaggataatgcatt-tgtatgtagaggccgaagttcgaatcccggacaccccatttattcacctttaaagtgaatt 39172213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 338 - 418
Target Start/End: Original strand, 30659968 - 30660048
Alignment:
Q  338 tgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||||| |||||||| | |||||||| || || ||| |||| |||| || |||| ||||||||||||||||||||| ||||    
T  30659968 tgataagggataatgtattatgtatgcaggggtcggggttcaaaccccggacaccccactatttcacctttaaggtaaatt 30660048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 10621470 - 10621375
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||| |||||||| ||||||| |||||||||| |||||||| || || | | ||| ||||| || |||| ||| | |||||||||||| |||||||    
T  10621470 tgagcttagctcacttgataagggataatgcattatgtatgcaggggtcagggtttgaaccccggacaccccattttttcacctttaatgtgaatt 10621375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 442
Target Start/End: Original strand, 22652683 - 22652802
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||||||| ||||||||||  || | || || |||||| ||||||||| || |||| ||| |  ||||  || |||||||||| |||    
T  22652683 tgagcttagctcatttgataagggataatgcataatttgtgcaggggccggtgttcgaaccccggacaccccaattattcatgttaaaggtgaatttctc 22652782  T
Q  423 cagtcactaagccacttgac 442  Q
     || |||||||| |||||||    
T  22652783 tagccactaagctacttgac 22652802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 45536718 - 45536792
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccact 397  Q
    |||| |||| ||||||||||| ||||||||||| || | || || |||||||||||||||| || |||| |||||    
T  45536718 tgaggttaggtcatttgataagggataatgcaaaatttgtgcaggggccggagttcgaaccccggacaccccact 45536792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 360 - 442
Target Start/End: Original strand, 2824629 - 2824711
Alignment:
Q  360 tatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctccagtcactaagccacttgac 442  Q
    ||||||| || ||||||||||||  || |||  |||||||||||||||||||||||||| |||||| | |||| |||||||||    
T  2824629 tatgtaggggtcggagttcgaactccggacatcccactatttcacctttaaggtgaatttctccagccgctaaaccacttgac 2824711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 328 - 442
Target Start/End: Complemental strand, 11491309 - 11491195
Alignment:
Q  328 ttagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctccagtc 427  Q
    ||||||||||||| || ||||||||||  || | || || |||||||||||||||| || |||| |||||  |||| |||||||||||||| ||| || |    
T  11491309 ttagctcatttgacaagggataatgcataatttgtgcaggggccggagttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 11491210  T
Q  428 actaagccacttgac 442  Q
    |||| || |||||||    
T  11491209 actaggctacttgac 11491195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 323 - 442
Target Start/End: Original strand, 16556451 - 16556570
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||| ||||||||||  || | || || || ||| ||||||||| ||||||| |||||  |||| |||||||||||||| |||    
T  16556451 tgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcgaaccccgaacaccccacttattcatctttaaggtgaatttctc 16556550  T
Q  423 cagtcactaagccacttgac 442  Q
     || ||||| || |||||||    
T  16556551 tagccactaggctacttgac 16556570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 323 - 442
Target Start/End: Original strand, 37574273 - 37574391
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||| |||||||||| | |||||| || |||||| |||| |||| ||  ||| |||||  ||||||||||||||||||| |||    
T  37574273 tgagcttagctcatttggtaagggataatgcatt-tgtatgcaggggccggggttcaaaccccgggcaccccacttattcacctttaaggtgaatttctc 37574371  T
Q  423 cagtcactaagccacttgac 442  Q
     || ||||| || |||||||    
T  37574372 tagccactaggctacttgac 37574391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 323 - 442
Target Start/End: Original strand, 50815707 - 50815826
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||||||||||||||||||  || | || || |||||| ||||||||| || |||| ||||   |||| ||| |||||||||| |||    
T  50815707 tgagcttagctcatttgataaaggataatgcacaatttgtgcaggggccggggttcgaaccccggacaccccacatattcatcttaaaggtgaatttctc 50815806  T
Q  423 cagtcactaagccacttgac 442  Q
     || ||||| || |||||||    
T  50815807 tagccactaggctacttgac 50815826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 442
Target Start/End: Complemental strand, 2766831 - 2766734
Alignment:
Q  345 ggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctccagtcactaagccacttgac 442  Q
    |||||||||| |||||||| || ||||||  |||||||| |   |||  ||||||||||||||||||||||||| |||||| | ||| || |||||||    
T  2766831 ggataatgcattatgtatgcaggggccgggattcgaaccccaggcacctcactatttcacctttaaggtgaatttctccagccgctaggctacttgac 2766734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 323 - 431
Target Start/End: Original strand, 46283122 - 46283230
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| ||| |||||||| ||| ||||||||||  || | || || |||||| ||||||||| || |||| |||||  |||| |||||||||||||| |||    
T  46283122 tgagcttacctcatttggtaagggataatgcacaatatgtgcagcggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctc 46283221  T
Q  423 cagtcacta 431  Q
     ||||||||    
T  46283222 tagtcacta 46283230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 56555600 - 56555643
Alignment:
Q  375 gttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    ||||||||||||||||| |||||  |||||||||||||||||||    
T  56555600 gttcgaacctcgaacaccccacttattcacctttaaggtgaatt 56555643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 319 - 418
Target Start/End: Original strand, 9489473 - 9489572
Alignment:
Q  319 ctcgtgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||||||| |||||||  ||| ||| |||||||||| |||||||| || |||||| |||||||||  | | || | ||||||||||||||||| ||||||    
T  9489473 ctcgtgagtttagctcgcttggtaagggataatgcattatgtatgcaggggccggggttcgaaccctggataccctactatttcacctttaagatgaatt 9489572  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 425
Target Start/End: Original strand, 48717422 - 48717515
Alignment:
Q  332 ctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctccag 425  Q
    |||||||| ||| | ||||| || |||||||| || ||  || ||||||||| | ||||| ||||| ||||| |||||||||||||| ||||||    
T  48717422 ctcatttggtaaggaataatacattatgtatgcaggggtaggggttcgaaccccaaacaccccactttttcatctttaaggtgaatttctccag 48717515  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 323 - 433
Target Start/End: Original strand, 43227866 - 43227976
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||| ||||||||||  || | || || |||||| ||||||||| || |||| |||||  |||| |||||||||||||| |||    
T  43227866 tgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctc 43227965  T
Q  423 cagtcactaag 433  Q
     || |||||||    
T  43227966 tagccactaag 43227976  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 323 - 431
Target Start/End: Original strand, 31250147 - 31250255
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||| ||||||||||  || | || || |||||| ||||||||| || |||| |||||  |||| |||||||||||||| |||    
T  31250147 tgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctc 31250246  T
Q  423 cagtcacta 431  Q
     || |||||    
T  31250247 tagccacta 31250255  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 38503352 - 38503257
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaatt 418  Q
    |||| |||||||||||| ||| ||||||||||  || | || || |||||| ||||||||| || |||| |||||  |||| ||||||||||||||    
T  38503352 tgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatt 38503257  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 442
Target Start/End: Original strand, 419712 - 419831
Alignment:
Q  323 tgagattagctcatttgataaaggataatgcaatatgtatgtagaggccggagttcgaacctcgaacactccactatttcacctttaaggtgaattcctc 422  Q
    |||| |||||||||||| ||| |||||||| |  || | || || |||||| ||||||||| || |||| |||||  |||| |||||||||||||| |||    
T  419712 tgagcttagctcatttggtaagggataatgaacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctc 419811  T
Q  423 cagtcactaagccacttgac 442  Q
     || ||||| || |||||||    
T  419812 tagccactaggctacttgac 419831  T

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