View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5469_high_2 (Length: 267)

Name: NF5469_high_2
Description: NF5469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5469_high_2
NF5469_high_2
[»] chr2 (3 HSPs)
chr2 (144-253)||(16863000-16863109)
chr2 (15-68)||(16863110-16863163)
chr2 (144-184)||(12123318-12123358)
[»] chr7 (1 HSPs)
chr7 (144-180)||(3031119-3031155)
[»] chr4 (1 HSPs)
chr4 (144-200)||(25209797-25209852)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 16863109 - 16863000
Alignment:
Q  144 aaatgttaatatattaattattatgttactatttttctctcttgcctgaacttgaactgtcaaccttgaactcctttagaacaacgtgagaacactgagg 243  Q
    |||||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16863109 aaatgttaatatattaattattatgttggtatttttctcgcttgccagaacttgaactgtcaaccttgaactcctttagaacaacgtgagaacagtgagg 16863010  T
Q  244 ttgagaaatg 253  Q
    ||||||||||    
T  16863009 ttgagaaatg 16863000  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 16863163 - 16863110
Alignment:
Q  15 atcaagaaatcacaacaaaatcttagaagaaacacgagatattcaaacatcaat 68  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16863163 atcaagaaatcacaacaaaatcttagaagaaacgcgagatattcaaacatcaat 16863110  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 12123358 - 12123318
Alignment:
Q  144 aaatgttaatatattaattattatgttactatttttctctc 184  Q
    |||||||||||||||||||||||||||| | ||||| ||||    
T  12123358 aaatgttaatatattaattattatgttaatttttttttctc 12123318  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 3031155 - 3031119
Alignment:
Q  144 aaatgttaatatattaattattatgttactatttttc 180  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  3031155 aaatgttaatatattaattgttatgttagtatttttc 3031119  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 25209852 - 25209797
Alignment:
Q  144 aaatgttaatatattaattattatgttactatttttctctcttgcctgaacttgaac 200  Q
    |||||||| ||| ||||||||||||||| |||||||||| ||||||  |||||||||    
T  25209852 aaatgttagtatgttaattattatgttagtatttttctc-cttgccaaaacttgaac 25209797  T

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