View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5469_low_1 (Length: 452)

Name: NF5469_low_1
Description: NF5469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5469_low_1
NF5469_low_1
[»] chr4 (10 HSPs)
chr4 (121-351)||(3274980-3275208)
chr4 (145-437)||(3256630-3256920)
chr4 (345-437)||(3279962-3280054)
chr4 (209-427)||(3271083-3271298)
chr4 (220-432)||(3289758-3289973)
chr4 (210-432)||(3287674-3287905)
chr4 (226-422)||(3250505-3250698)
chr4 (275-427)||(3284663-3284812)
chr4 (236-432)||(3295719-3295918)
chr4 (11-46)||(3274870-3274905)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 121 - 351
Target Start/End: Original strand, 3274980 - 3275208
Alignment:
Q  121 ctaaacctttgtacaactataaatcataactcacaaggttaaagaaaactagtccaaattaagaaactcaattgcatatcatatgttcttagctagcact 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  |||||||||||    
T  3274980 ctaaacctttgtacaactataaatcataactcacaaggttaaagaaaactagtccaaattaagaaactcaattgcat--catatgtttctagctagcact 3275077  T
Q  221 catcgtttatctccgatatttcttcacaatccatcacttcaaaattcttcttgcaaatcttggaggatggtgctgcaaatcgagccgaaaatgaccttga 320  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3275078 catcgtttatctttgatatttcttcacaatccatcacttcaaaattcttcttgcaaatcttggaggatggtgctgcaaatcgagccgaaaatgaccttga 3275177  T
Q  321 aaaattatcaggatcagtggaataaccatca 351  Q
    |||||||||||||||||||||||||||||||    
T  3275178 aaaattatcaggatcagtggaataaccatca 3275208  T

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Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 145 - 437
Target Start/End: Original strand, 3256630 - 3256920
Alignment:
Q  145 cataactcacaaggttaaagaaaactagtccaaattaagaaactcaattgcatatcatatgttcttagctagcactcatcgtttatctccgatatttctt 244  Q
    ||||| |||||||  |||||||||  ||||||||||||| ||||||| | |||  |||| |||| |||||| | ||| |||||||||||  |||||| ||    
T  3256630 cataattcacaagcgtaaagaaaatgagtccaaattaagcaactcaagtacat--catacgttcctagctaactctcttcgtttatctctaatatttgtt 3256727  T
Q  245 cacaatccatcacttcaaaattcttcttgcaaatcttggaggatggtgctgcaaatcgagccgaaaatgaccttgaaaaattatcaggatcagtggaata 344  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||| ||||||||||||| ||| |||| ||    
T  3256728 cacaatccatcacttcaaaattcttcttacaaatcttggaggacggtgcagcaaatcgagctgagaatgaccttaaaaaattatcagggtcaatggagta 3256827  T
Q  345 accatcatcaaaattttgtaagtaagaattagaatcatatagaaatactggtgaaggcgatctaaatattttcctcttcttttctttcataat 437  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  3256828 accatcatcaaaattttgtaagtaagaattagaatcatatataaatactggtgagggcgatctaaatattctcctcttcttttctttcttaat 3256920  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 345 - 437
Target Start/End: Original strand, 3279962 - 3280054
Alignment:
Q  345 accatcatcaaaattttgtaagtaagaattagaatcatatagaaatactggtgaaggcgatctaaatattttcctcttcttttctttcataat 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3279962 accatcatcaaaattttgtaagtaagaattagaatcatatagaaatactggtgaaggcgatttaaatattttcctcttcttttctttcataat 3280054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 209 - 427
Target Start/End: Original strand, 3271083 - 3271298
Alignment:
Q  209 ttagctagcactcatcgtttatctccgatatttcttcacaatccatcacttcaaaattcttcttgcaaatcttggaggatggtgctgcaaatcgagccga 308  Q
    ||||||||| |||||||| ||||||  |||| ||||||  |||||||||||||||||| ||||   |||||||||||| |||| ||||||||||||| ||    
T  3271083 ttagctagctctcatcgtctatctctaatatatcttcatcatccatcacttcaaaatttttctcaaaaatcttggagggtggtcctgcaaatcgagctga 3271182  T
Q  309 aaatgaccttgaaaaattatcaggatcagtggaataaccatcatcaaaattttgtaagtaagaattagaatcatatagaaatactggtgaaggcgatcta 408  Q
     ||||||||||||||||||||||| ||| |||   ||||||||||||| |||||||| |||||   |  |||||||||||| || |||||||  ||||||    
T  3271183 gaatgaccttgaaaaattatcagggtcaatgg---aaccatcatcaaagttttgtaaataagagcaatgatcatatagaaacacaggtgaagatgatcta 3271279  T
Q  409 aatattttcctcttctttt 427  Q
    || ||| || |||||||||    
T  3271280 aaaattctcatcttctttt 3271298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 220 - 432
Target Start/End: Original strand, 3289758 - 3289973
Alignment:
Q  220 tcatcgtttatctccgatatttcttcacaatccatcacttcaaaattcttcttgcaaatcttggaggatggtgctgcaaatcgagccgaaaatgaccttg 319  Q
    ||||| |||||||||  ||| ||||||| |||||| ||||||| ||||||||   |||||||||||| |||  ||||||||||||| || ||||||||||    
T  3289758 tcatcatttatctccactatctcttcaccatccattacttcaatattcttctgaaaaatcttggagggtgggcctgcaaatcgagcagagaatgaccttg 3289857  T
Q  320 aaaaattatcaggatcagtggaat---aaccatcatcaaaattttgtaagtaagaattagaatcatatagaaatactggtgaaggcgatctaaatatttt 416  Q
    ||||||||||||| ||| ||||||   ||||||||||||||||||||||||||||   || |||||||||||| || || ||||    |||||| ||| |    
T  3289858 aaaaattatcagggtcaatggaataacaaccatcatcaaaattttgtaagtaagagcaaggatcatatagaaacaccggcgaagatcttctaaaaattct 3289957  T
Q  417 cctcttcttttctttc 432  Q
    |||||||||| |||||    
T  3289958 cctcttctttgctttc 3289973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 432
Target Start/End: Original strand, 3287674 - 3287905
Alignment:
Q  210 tagctagcactcatcgtttatctccgatatttcttcacaatccatcacttcaaaattcttcttgcaaatcttggaggatgg-tgctgcaaatcgagccga 308  Q
    ||||||||  || |||||||||||  |||||||||||  |||||||||||||| ||||||||   |||| ||| ||| ||| || |||||||| ||| ||    
T  3287674 tagctagctttcgtcgtttatctctaatatttcttcatcatccatcacttcaacattcttctcaaaaatattgaagggtggatgatgcaaatcaagctga 3287773  T
Q  309 aaatgaccttgaaaaattatcaggatcagtggaataac-----catcatc-aaaattttgtaagtaagaat--tagaatcatatagaaatactggtgaag 400  Q
    ||||||| ||||||||||||| || |||||||||||||     ||||||| ||||||||||||||||||||  ||| |||||||||||| ||  ||||||    
T  3287774 aaatgactttgaaaaattatccgggtcagtggaataactaccacatcatcaaaaattttgtaagtaagaatactaggatcatatagaaacacaagtgaag 3287873  T
Q  401 gcgatctaaatattttcctcttcttttctttc 432  Q
    | |||||||| ||| ||||||| |||||||||    
T  3287874 gggatctaaaaattatcctctttttttctttc 3287905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 226 - 422
Target Start/End: Original strand, 3250505 - 3250698
Alignment:
Q  226 tttatctccgatatttcttcacaatccatcacttcaaaattcttcttgcaaatcttggaggatggtgctgcaaatcgagccgaaaatgaccttgaaaaat 325  Q
    ||||||||  |||||||||||  | |||||||||||| ||||||||   |||||||| | |   ||||||| |||||||| || ||||| ||||||| ||    
T  3250505 tttatctcaaatatttcttcatcaaccatcacttcaatattcttctcaaaaatcttgcacg---gtgctgcgaatcgagctgagaatgatcttgaaacat 3250601  T
Q  326 tatcaggatcagtggaataaccatcatcaaaattttgtaagtaagaattagaatcatatagaaatactggtgaaggcgatctaaatattttcctctt 422  Q
    |||||| ||| ||||||||||||||||| ||||| ||||||||||| |||| |||||||| ||| || |||||||  |||||||| ||| |||||||    
T  3250602 tatcagcatcggtggaataaccatcatcgaaattctgtaagtaagagttaggatcatatataaacacaggtgaagatgatctaaaaattctcctctt 3250698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 275 - 427
Target Start/End: Original strand, 3284663 - 3284812
Alignment:
Q  275 aaatcttggaggatggtgctgcaaatcgagccgaaaatgaccttgaaaaattatcaggatcagtggaataaccatcatcaaaattttgtaagtaagaatt 374  Q
    ||||||| |||| ||||| |||||||||||| || ||||||||||||||||||||||| ||| ||   |||||||||||||| |||||||||||||||      
T  3284663 aaatctttgagggtggtgttgcaaatcgagctgataatgaccttgaaaaattatcagggtcaatg---taaccatcatcaaagttttgtaagtaagaaca 3284759  T
Q  375 agaatcatatagaaatactggtgaaggcgatctaaatattttcctcttctttt 427  Q
    |  |||||||| |||||| |||||||  |||||||| ||| ||||||||||||    
T  3284760 acgatcatataaaaatacgggtgaagatgatctaaaaattctcctcttctttt 3284812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 432
Target Start/End: Original strand, 3295719 - 3295918
Alignment:
Q  236 atatttcttcacaatccatcacttcaaaattcttcttgcaaa-tcttggaggatggtgctgcaaatcgagccgaaaatgaccttgaaaaattatcaggat 334  Q
    |||||||||||| ||  || |||||||||||||||| ||| | ||||||||| ||||||||||||||| || |  |||||||||||||||| ||||||||    
T  3295719 atatttcttcaccatttatgacttcaaaattcttct-gcagagtcttggagggtggtgctgcaaatcgggctgtgaatgaccttgaaaaatcatcaggat 3295817  T
Q  335 cagtggaat---aaccatcatcaaaattttgtaagtaagaattagaatcatatagaaatactggtgaaggcgatctaaatattttcctcttcttttcttt 431  Q
    ||||  |||   |||||||||||||||||||||| || ||  ||||||||||| |||| || || ||||  ||| |||||||| |||| |||||||||||    
T  3295818 cagtaaaataacaaccatcatcaaaattttgtaaatatgagctagaatcatattgaaacacgggagaagatgatgtaaatattctccttttcttttcttt 3295917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 3274870 - 3274905
Alignment:
Q  11 atcatcatattgtagtctatcacctttacaaaatct 46  Q
    ||||||||||||||||||||||||||||||||||||    
T  3274870 atcatcatattgtagtctatcacctttacaaaatct 3274905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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