View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5469_low_2 (Length: 280)
Name: NF5469_low_2
Description: NF5469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5469_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 44489702 - 44489458
Alignment:
| Q |
19 |
ggtaattatagtcatatacaacgacagtctctggtttccaaccatctcttcctttcctaaataagtacagttcacatatctggctggtacattctcccat |
118 |
Q |
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| T |
44489702 |
ggtaattatagtcatatacaacgacagtctctggtttccaaccatctcttcctttcctaaataagtacagttcacatatctggctggtacattctcccat |
44489603 |
T |
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| Q |
119 |
tacatcaaatgaaactgtggtgcacttcttgaatgcaccagggtcatccaatcttttaacataaagctgcaattatacatcaaaccagtacattacataa |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489602 |
tacatcaaatgaaactgtggtgcacctcttgaatgcaccagggtcatccaatcttttaacataaagctgcaattatacatcaaaccagtacattacataa |
44489503 |
T |
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| Q |
219 |
tttcattnnnnnnnnntataattcatataaactattaattgttcat |
264 |
Q |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
44489502 |
tttcattaaaaaaaaa-ataattcatataaactattaattgttcat |
44489458 |
T |
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