View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5470-Insertion-2 (Length: 822)
Name: NF5470-Insertion-2
Description: NF5470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5470-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 744; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 8 - 815
Target Start/End: Original strand, 915028 - 915836
Alignment:
| Q |
8 |
tgtgacacattgattgaacaacatgaaatcttcaatcaatccaaatatcattagcttgcggacataacataagacaatgaataatgnnnnnnnccttcac |
107 |
Q |
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| T |
915028 |
tgtgacacattgattgaacaacatgaaatcttcaatcaatccaaatatcattagcttgcggacataacataagacaatgaataatgtttttttccttcac |
915127 |
T |
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| Q |
108 |
acaacaatgggcaagttgatgttaactgaactccccgatgacacattttatatttctagtggggagagatttgtgaaaagtttgtcattcaatcttgctc |
207 |
Q |
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| T |
915128 |
acaacaatgggcaagttgatgttaactgaactccccgatgacacattttatatttctagtggggagagatttgtgaaaagtttgtcatacaatcttgctc |
915227 |
T |
|
| Q |
208 |
gtaccttccaaatccatgaccaagattgttgaagattttcaatatggtgttgagataagagccaattggaacaactcttctaaattgacaactaggctct |
307 |
Q |
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| T |
915228 |
gtaccttccaaatccatgaccaagattgttgaagattttcaatatggtgttgagataagagccaattggaacaactcttctaaattgacaactaggctct |
915327 |
T |
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| Q |
308 |
gtttggattgatgtaacaaaatgaagcggaatgaaataaaacataatgaaatggagtagaatgaaacataacggaatgaatgttccttgtcattgttcgg |
407 |
Q |
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| T |
915328 |
gtttggattgatgtaacaaaatgaagcggaatgaaataaaacataatgaaatggagtagaatgaaacataacggaatgaatgttccttgtcattgttcgg |
915427 |
T |
|
| Q |
408 |
gtatgatatgacagagcataacaaattactcgctccattatttagaaagtgaacgaaatggaacgagttgtannnnnnnnattccttttgaagccaatac |
507 |
Q |
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| T |
915428 |
gtatgatatgacagagcataacaaattactcgctccattatttagaaagtgaacgaaatggaacgagttgtattttttttattccttttgaagccaatac |
915527 |
T |
|
| Q |
508 |
cagaactaatggtatgttgttgcatattgaagccaacactatagattgagatacgatactattgaagaaaaatagaatgaacgaaatgtagtaaagggaa |
607 |
Q |
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| T |
915528 |
cagaactaatggtatgttgttgcatattgaagccaacactatagattgagatacgatactattgaagaaaaatagaatgaacgaaatgtagtaaagggaa |
915627 |
T |
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| Q |
608 |
gttgaggcctaatacaaggatgcatttgtaatttattaattaaacaaactagttaattgggattaattctcgttccatccaaattaaagggtaagtaaaa |
707 |
Q |
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| T |
915628 |
gttgaggcctaatacaaggatgcatttgtaatttattaattaaacaaactagttaattgggattaattctcgttccatccaaattaaagggtaagtaaaa |
915727 |
T |
|
| Q |
708 |
tgaggataagtaatgaaatacaataaaatgtatacggttgtg-tttattccatcaatctaacaaatttttcgccaacattggagtaaattcagacttagt |
806 |
Q |
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| T |
915728 |
tgaggataagtaatgaaatacaataaaatgtatacggttgtgttttattccatcaatctaacaaatttttcgccaacattggagcgaattcagacttagt |
915827 |
T |
|
| Q |
807 |
ctcccccac |
815 |
Q |
| |
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| T |
915828 |
ctcccccac |
915836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 994738 - 994668
Alignment:
| Q |
181 |
tgaaaagtttgtcattcaatcttgctcgtaccttccaaatccatgaccaagattgttgaagattttcaata |
251 |
Q |
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||||||||||||||| |||||||||||||| ||||| |||| || ||||||||||||| |||||||||| |
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| T |
994738 |
tgaaaagtttgtcatacaatcttgctcgtagtgtccaagtccacgagcaagattgttgaaaattttcaata |
994668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 770 - 815
Target Start/End: Original strand, 917075 - 917120
Alignment:
| Q |
770 |
aatttttcgccaacattggagtaaattcagacttagtctcccccac |
815 |
Q |
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| T |
917075 |
aatttttagccaacattggagcgaattcagacttagtctcccccac |
917120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 657
Target Start/End: Complemental strand, 994639 - 994602
Alignment:
| Q |
621 |
acaaggatgcattt-gtaatttattaattaaacaaact |
657 |
Q |
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| T |
994639 |
acaaggatgcattttgtaatttattaattaaacaaact |
994602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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