View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5470-Insertion-3 (Length: 812)

Name: NF5470-Insertion-3
Description: NF5470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5470-Insertion-3
NF5470-Insertion-3
[»] chr1 (1 HSPs)
chr1 (23-766)||(50408315-50409085)


Alignment Details
Target: chr1 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 23 - 766
Target Start/End: Original strand, 50408315 - 50409085
Alignment:
Q  23 tgattcattgatgtataggggttgaatgttgaatgttg----------attggtgtttcaatgttgatttataagcaaatttcactaccactaggacgac 112  Q
    ||||||||||||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  50408315 tgattcattgatgtataggggttgaatgttgaatgttgttgaatgttgattggtgtttgaatgttgatttataagcaaatttcactaccactaggacgac 50408414  T
Q  113 aatgactaggaaccgaaaaacaa-ttcaatccatttttgtgtctatagtataggaccgctttctttttcaatacccatctttcactgtaatcatgtgata 211  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50408415 aatgactaggaaccgaaaaaaaaattcaatccatttttgtgtctatagtataggaccgctttctttttcaatacccatctttcactgtactcatgtgata 50408514  T
Q  212 aatatagggaatcaattataatatctaattttggctatacatgaatgaattttgtgtattcaactttggcattttcttgcgtgcaacattttgctgtctc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  50408515 aatatagggaatcaattataatatctaattttggctatacatgaatgaattttgtgtattcaactttggcattttcttgtgtccaacattttgctgtctc 50408614  T
Q  312 agctacgtgcttggtttggcaccatatagcaaattgttagttacttgtttaaagtaaattaacaatgatgattacttgtaaaaagaataaaaaatcacaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50408615 agctacgtgcttggtttggcaccatatagcaaattgttagttacttgtttaaagtaaattaacaatgatgattacttgtaaaaagaataaaaaatcacaa 50408714  T
Q  412 ------tgatgaatccaattcagtgggagatactaaaaagagagctataaacttttaacaattgaaaagagagcaaaataagattctatgctattttatt 505  Q
          | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  50408715 tcatattcatgaatccaattcagtgggagatactaaaaagagagctataaacttttaataattgaaaagagagcaaaataagattctatgctattttatt 50408814  T
Q  506 atattacttttaagcagtacatgtg-----------atagtaagccaagtatactaaaccgagtaaattatatgcatagnnnnnnnnnattttattaaaa 594  Q
    |||||||||||||||||||||||||           ||||||| |||||||||||||||||||||||||||||||||||         ||||||||||||    
T  50408815 atattacttttaagcagtacatgtgactactataaaatagtaacccaagtatactaaaccgagtaaattatatgcatag--tttttttattttattaaaa 50408912  T
Q  595 atatctttgtttacctaggcaatgttcactcatgtgaaagagtaccaattactcaatttgcaattgtaaaatatcaagaaggcaacgagtttaaagctct 694  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50408913 atttctttgtttacctaggcaatgttcactcatgtgaaggagtaccaattactcaatttgcaattgtaaaatatcaagaagacaacgagtttaaagctct 50409012  T
Q  695 gtttgtgg-aaaatatctcactcatgtccctatgagcatcattaacttaccaaaatatcctttattctaacaa 766  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  50409013 gtttgtggaaaaatatctcactcatgtccctatgaacatcattaacttaccaaaatatcctttattctaacaa 50409085  T

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