View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5470-Insertion-5 (Length: 352)
Name: NF5470-Insertion-5
Description: NF5470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5470-Insertion-5 |
 | |
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| [»] chr8 (6 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 76 - 352
Target Start/End: Complemental strand, 12587811 - 12587536
Alignment:
| Q |
76 |
caggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctannnnnnnnnatatatacatatacatatactgctaataacacccc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
12587811 |
caggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctattttttttttt-tatacatatacatatactgctaataacacccc |
12587713 |
T |
|
| Q |
176 |
acccactactgctagcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagccaacacaattatgatttatacca |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |
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|
| T |
12587712 |
acccactactgctagcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagctaacacaattctgatttacacca |
12587613 |
T |
|
| Q |
276 |
acacaacacaggtcccaccatccacaatttacaatcacggtttctttctttctttctcatagtgaacaaacaaactc |
352 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
12587612 |
acacaacacaggtcccgccatccacaatttacaatcacggtttctttctttctttctcacagtgaacaaacaaactc |
12587536 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 27324911 - 27324864
Alignment:
| Q |
76 |
caggggcggagccactcacatgattgtgggggctcctgcctgcacaaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
27324911 |
caggggcggagccactcacatgattgtgggggctcctacatgcacaaa |
27324864 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 26647250 - 26647297
Alignment:
| Q |
76 |
caggggcggagccactcacatgattgtgggggctcctgcctgcacaaa |
123 |
Q |
| |
|
||||||||||||||| |||| | ||||| ||||||||||||||||||| |
|
|
| T |
26647250 |
caggggcggagccacacacaaggttgtgtgggctcctgcctgcacaaa |
26647297 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 34054155 - 34054197
Alignment:
| Q |
80 |
ggcggagccactcacatgattgtgggggctcctgcctgcacaa |
122 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||||||||| |
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|
| T |
34054155 |
ggcggagccactcacaagagtgtgggggctcctacctgcacaa |
34054197 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 27324691 - 27324650
Alignment:
| Q |
311 |
cacggtttctttctttctttctcatagtgaacaaacaaactc |
352 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27324691 |
cacgttttctttctttctttctcacggtgaacaaacaaactc |
27324650 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 29283732 - 29283695
Alignment:
| Q |
85 |
agccactcacatgattgtgggggctcctgcctgcacaa |
122 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
29283732 |
agccactcacaagagtgtgggggctcctgcctgcacaa |
29283695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 76 - 350
Target Start/End: Original strand, 6900343 - 6900618
Alignment:
| Q |
76 |
caggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctannnnnnnnnat-atatacatatacatatactgctaataacaccc |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |
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|
| T |
6900343 |
caggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttttctaatttttttttttatatacatatacatatactgctaataacaccc |
6900442 |
T |
|
| Q |
175 |
cacccactactgctagcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagccaacacaattatgatttatacc |
274 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| | ||| |
|
|
| T |
6900443 |
cacccactattgctagcaatttctaaaatatcaaacactcccactcagtagcccaactgcccaatcccaaggcccagttaacacaattctgattcacacc |
6900542 |
T |
|
| Q |
275 |
aacacaacacaggtcccaccatccacaatttacaatcacggtttctttctttctttctcatagtgaacaaacaaac |
350 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
6900543 |
aacacaacacacgtcccgccatccacaattcacaatcacgctttctttctttctttcttacagtgaacaaacaaac |
6900618 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 77 - 352
Target Start/End: Original strand, 22969821 - 22970094
Alignment:
| Q |
77 |
aggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctannnnnnnnnatatatacatatacatatactgctaataacacccca |
176 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||| | | | ||| |||||||||||||||||||||||| |
|
|
| T |
22969821 |
aggggcggagccactcacatgattaagggggctcctgcctgcacaaacttttctaaatt------tttttttataaacatatactgctaataacacccca |
22969914 |
T |
|
| Q |
177 |
cccactactgctagcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagccaacacaattatgatttataccaa |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||| |
|
|
| T |
22969915 |
cccactactgctagcaatttctaaaatatcaaacactcccacccagtagcccaactgcccaatcccaaggcccagctaacacaattctgatttacatcaa |
22970014 |
T |
|
| Q |
277 |
cacaacacaggtcccaccatccacaatttacaatcacgg----tttctttctttctttctcatagtgaacaaacaaactc |
352 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22970015 |
cacaacacacgtcccgccatccacaatttacaatcacggtttctttctttctttctttctcacagtgaacaaacaaactc |
22970094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 76 - 267
Target Start/End: Original strand, 22962526 - 22962718
Alignment:
| Q |
76 |
caggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctannnnnnnnnat-atatacatatacatatactgctaataacaccc |
174 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| || |||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
22962526 |
caggggcagagccactcacatgattgtgggggctcctgcctgcacaaatttttctaatttttttttttatatacatata--tatactgctaataacaccc |
22962623 |
T |
|
| Q |
175 |
cacccactactgct--agcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagccaacacaattatgat |
267 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||||| || |||||| |||||||||||||||||||||| ||||||| ||||||||| |||| |
|
|
| T |
22962624 |
cacccactattgctttagtaatttctaaaatatcaaacactctcacccaatagcccaactgcccaatcccaaagcccagctaacacaattctgat |
22962718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 21312066 - 21312015
Alignment:
| Q |
73 |
aatcaggggcggagccactcacatgattgtgggggctcctgcctgcacaaac |
124 |
Q |
| |
|
|||||| ||||||||||| |||| | ||||| |||||||||||||||||||| |
|
|
| T |
21312066 |
aatcagtggcggagccacacacaaggttgtgtgggctcctgcctgcacaaac |
21312015 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 77 - 352
Target Start/End: Complemental strand, 21880804 - 21880531
Alignment:
| Q |
77 |
aggggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctannnnnnnnnatatatacatatacatatactgctaataacacccca |
176 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||| | | | ||| |||||||||||||||||||||||| |
|
|
| T |
21880804 |
aggggcggagccactcacatgattaagggggctcctgcctgcacaaacttttctaaatt------tttttttataaacatatactgctaataacacccca |
21880711 |
T |
|
| Q |
177 |
cccactactgctagcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagccaacacaattatgatttataccaa |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||| |
|
|
| T |
21880710 |
cccactactgctagcaatttctaaaatatcaaacactcccacccagtagcccaactgcccaatcccaaggcccagctaacacaattctgatttacatcaa |
21880611 |
T |
|
| Q |
277 |
cacaacacaggtcccaccatccacaatttacaatcacggtttctttctttct----ttctcatagtgaacaaacaaactc |
352 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
21880610 |
cacaacacacgtcccgccatccacaatttacaatcacggtttctttctttctttctttctcacagtgaacaaacaaactc |
21880531 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 80 - 352
Target Start/End: Complemental strand, 49603360 - 49603083
Alignment:
| Q |
80 |
ggcggagccactcacatgattgtgggggctcctgcctgcacaaacttctctannnnnnnnnat-atatacatatacatatactgctaataacaccccacc |
178 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49603360 |
ggcggagccactcacatgattgcgggggctcctgcctgcacaaacttttctaatttttttttttatatacatatatatatactgctaataacaccccacc |
49603261 |
T |
|
| Q |
179 |
cactactgctagcaatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagccaacacaattatgatttataccaaca |
278 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| | ||||||||| ||||| | ||||||| |
|
|
| T |
49603260 |
tactattgctaacaatttctaaaatatcaaacactcctacccagtagcctaactgcccaatcccaaggcccaactaacacaattctgattcacaccaaca |
49603161 |
T |
|
| Q |
279 |
caacacaggtcccaccatccacaatttacaatcacggtttctttctt----tctttctcatagtgaacaaacaaactc |
352 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
49603160 |
caacacacgtcccgccatccacaattcacaatcacgctttctttctttctctctttctcacagtgaacaaacaaactc |
49603083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 36840828 - 36840782
Alignment:
| Q |
74 |
atcaggggcggagccactcacatgattgtgggggctcctgcctgcac |
120 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
36840828 |
atcagaggcggaaccactcacattattgtgggggctcgtgcctgcac |
36840782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 41451257 - 41451213
Alignment:
| Q |
76 |
caggggcggagccactcacatgattgtgggggctcctgcctgcac |
120 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
41451257 |
caggggcggagccactcacatcagtgtgggggctcctgcctgcac |
41451213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 53232876 - 53232830
Alignment:
| Q |
77 |
aggggcggagccactcacatgattgtgggggctcctgcctgcacaaa |
123 |
Q |
| |
|
|||||||||||||| |||| | ||||| ||||||||||||||||||| |
|
|
| T |
53232876 |
aggggcggagccacacacaagcttgtgtgggctcctgcctgcacaaa |
53232830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 3293738 - 3293785
Alignment:
| Q |
76 |
caggggcggagccactcacatgattgtgggggctcctgcctgcacaaa |
123 |
Q |
| |
|
||||||||||||||| |||| | ||||| ||||||||||||||||||| |
|
|
| T |
3293738 |
caggggcggagccacacacaaggttgtgtgggctcctgcctgcacaaa |
3293785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 10711726 - 10711679
Alignment:
| Q |
76 |
caggggcggagccactcacatgattgtgggggctcctgcctgcacaaa |
123 |
Q |
| |
|
||||||||||||||| |||| | ||||| ||||||||||||||||||| |
|
|
| T |
10711726 |
caggggcggagccacacacaaggttgtgtgggctcctgcctgcacaaa |
10711679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 26332 - 26288
Alignment:
| Q |
80 |
ggcggagccactcacatgattgtgggggctcctgcctgcacaaac |
124 |
Q |
| |
|
||||||||||| |||| | ||||| |||||||||||||||||||| |
|
|
| T |
26332 |
ggcggagccacacacaaggttgtgtgggctcctgcctgcacaaac |
26288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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