View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5470-Insertion-6 (Length: 160)
Name: NF5470-Insertion-6
Description: NF5470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5470-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 2e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 7913362 - 7913210
Alignment:
| Q |
6 |
caaataatagaaaattttggtatttctgtgggagcag------gggaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagcttcat |
99 |
Q |
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| T |
7913362 |
caaataatagaaaacttgggtatttttgtaggagcagagcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagcttcat |
7913263 |
T |
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| Q |
100 |
ttgtttgcacctcctgagggctgctagagcatcagactccctagtaaagaaaa |
152 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7913262 |
ttggttgcacctcctgagggctgctagagcatcagactccctagtaaagaaaa |
7913210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 7902940 - 7902820
Alignment:
| Q |
6 |
caaataatagaaaattttggtatttctgtgggagcagggg-aaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagcttcatttgtt |
104 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7902940 |
caaataatagaaaactttggtatttctgtgggagcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagcttcatttggt |
7902841 |
T |
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| Q |
105 |
tgcacctcctgagggctgcta |
125 |
Q |
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| T |
7902840 |
tgcacctcctgagggcagcta |
7902820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 7896426 - 7896323
Alignment:
| Q |
46 |
aaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagcttcatttgtttgcacctcctgagggctgctagagcatcagactccctagta |
145 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||| |||| || |||| ||| ||||||| ||| ||| |
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| T |
7896426 |
aaccaaacttgttccaacaagctcaatttgcaatgtctttccatcaagcttcatattgttgtacctcttgagagcggctaaagcctcagactgccttgta |
7896327 |
T |
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| Q |
146 |
aaga |
149 |
Q |
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|||| |
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| T |
7896326 |
aaga |
7896323 |
T |
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