View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5470_low_1 (Length: 535)

Name: NF5470_low_1
Description: NF5470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5470_low_1
NF5470_low_1
[»] chr1 (10 HSPs)
chr1 (18-525)||(8814087-8814582)
chr1 (195-468)||(235166-235424)
chr1 (301-466)||(251390-251555)
chr1 (301-468)||(246820-246987)
chr1 (311-466)||(231530-231691)
chr1 (19-245)||(247019-247248)
chr1 (18-243)||(251125-251356)
chr1 (391-459)||(4439822-4439890)
chr1 (19-107)||(235428-235516)
chr1 (358-443)||(18991182-18991267)
[»] chr6 (12 HSPs)
chr6 (311-451)||(7046809-7046949)
chr6 (302-443)||(7041474-7041615)
chr6 (301-439)||(7025732-7025876)
chr6 (301-441)||(9159491-9159637)
chr6 (145-242)||(7012990-7013087)
chr6 (301-385)||(7029849-7029933)
chr6 (301-385)||(9170853-9170937)
chr6 (311-439)||(7012796-7012930)
chr6 (160-242)||(7025926-7026008)
chr6 (196-242)||(212987-213033)
chr6 (157-242)||(7029983-7030068)
chr6 (397-441)||(9170791-9170835)
[»] chr3 (21 HSPs)
chr3 (311-443)||(9343823-9343955)
chr3 (328-443)||(41985606-41985721)
chr3 (391-459)||(9425535-9425603)
chr3 (311-428)||(9448307-9448424)
chr3 (391-452)||(9617549-9617610)
chr3 (391-443)||(9407344-9407396)
chr3 (358-458)||(9494861-9494961)
chr3 (99-242)||(9494635-9494781)
chr3 (391-443)||(9397763-9397815)
chr3 (328-440)||(9655380-9655492)
chr3 (394-440)||(9626569-9626615)
chr3 (391-452)||(9614039-9614100)
chr3 (391-440)||(9646450-9646499)
chr3 (397-465)||(9432852-9432920)
chr3 (313-452)||(9352870-9353009)
chr3 (331-441)||(41980834-41980944)
chr3 (391-452)||(9377055-9377116)
chr3 (397-458)||(9402342-9402403)
chr3 (397-458)||(9420581-9420642)
chr3 (391-443)||(9416551-9416603)
chr3 (391-443)||(16011768-16011820)
[»] chr5 (2 HSPs)
chr5 (140-242)||(33541813-33541915)
chr5 (392-465)||(18571064-18571137)
[»] chr7 (1 HSPs)
chr7 (313-447)||(3695664-3695797)
[»] chr2 (1 HSPs)
chr2 (391-452)||(20694387-20694448)
[»] chr8 (1 HSPs)
chr8 (393-443)||(44688873-44688923)


Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 8814087 - 8814582
Alignment:
Q  18 caaatgcggcgatgagaattggaagtttattcctgaaatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggtagacaaaact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8814087 caaatgcggcgatgagaattggaagtttattcctgaaatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggtagacaaaact 8814186  T
Q  118 ggacagactgttactgttggaccgtatgactcaactgttcagttagtggctgaatctttgcttgctggcggggatattaaattcctagttgagagcaagg 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8814187 ggacagactgttactgttggaccggatgactcaactgttcagttagtggctgaatctttgcttgctggcggggatattaaattcctagtggagagcaagg 8814286  T
Q  218 gtgatttgttgttagcagatgtttacgaccgtgagattgatgaagatgctgatgattatgattatgatcgtgccaggattggcaggattgacatgtttaa 317  Q
    |||||||||||||||||||||||||| ||||||| ||            |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8814287 gtgatttgttgttagcagatgtttacaaccgtgatat------------tgatgattatgattatgatcgtgccaggattggcaggattgacatgtttaa 8814374  T
Q  318 gcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcattttctgcttctgcttcggat 417  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||    
T  8814375 gcttaacgaaaaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgctttggat 8814474  T
Q  418 ttgtgtgttcccaaagggaattgtgtgatcattatggatgatatattcactggtgagtcttctatgggctannnnnnngacttggatgatggtcgacctt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  |||||||||||||       ||||||||||||||||||||||    
T  8814475 ttgtgtgttcccaaagggaattgtgtgatcattatggatgatatcttcacttgtgatccttctatgggctattttttggacttggatgatggtcgacctt 8814574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 195 - 468
Target Start/End: Complemental strand, 235424 - 235166
Alignment:
Q  195 taaattcctagttgagagcaagggtgatttgttgttagcagatgtttacgaccgtgagattgatgaagatgctgatgattatgattatgatcgtgccagg 294  Q
    ||||||| |||| |||||| | |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||      ||||| |||    
T  235424 taaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattgatgaagatgctgatgattatgat------cgtgcaagg 235331  T
Q  295 attggcaggattgacatgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgtt 394  Q
    |||          || ||||||||||||| |||||||||||||||||| |||||||||| |  ||||||||||||||||| ||||||||||  || ||||    
T  235330 atta---------acgtgtttaagcttaatgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgtt 235240  T
Q  395 cattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattatggatgatatattcact 468  Q
    | |||||||||||||||||||||||||||||||||||||||||||  || |||||||||||| |||| ||||||    
T  235239 cgttttctgcttctgcttcggatttgtgtgttcccaaagggaatttagtcatcattatggataatatcttcact 235166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 301 - 466
Target Start/End: Original strand, 251390 - 251555
Alignment:
Q  301 aggattgacatgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcatttt 400  Q
    |||||| || ||||||||||||| |||||||| ||||||||| | ||||||||||   |||||||||||||||||||||||||||  || ||||||||||    
T  251390 aggattaacgtgtttaagcttaatgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcatttt 251489  T
Q  401 ctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattatggatgatatattca 466  Q
    ||| |||||| ||||||||||||||||  ||| ||||||||||||||||||||||| |||| ||||    
T  251490 ctgtttctgcatcggatttgtgtgttcggaaacggaattgtgtgatcattatggataatatcttca 251555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 301 - 468
Target Start/End: Complemental strand, 246987 - 246820
Alignment:
Q  301 aggattgacatgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcatttt 400  Q
    ||||||||| ||||||||||||| | || ||||||||| ||| |||||||||| |  ||||| |||| |||||||||||||||||   | || |||||||    
T  246987 aggattgacttgtttaagcttaatgcaagggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctggtcatttt 246888  T
Q  401 ctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattatggatgatatattcact 468  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |||| ||||||    
T  246887 ctgcttctgctttggatttgtgtgttcacaaagggaattgtgtcatcattatggataatatcttcact 246820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 311 - 466
Target Start/End: Complemental strand, 231691 - 231530
Alignment:
Q  311 tgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcattttctgcttctgc 410  Q
    |||||||||| || | |||||||| ||||||| |||||||||| |  |||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  231691 tgtttaagctcaatgcaaaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgc 231592  T
Q  411 ttc------ggatttgtgtgttcccaaagggaattgtgtgatcattatggatgatatattca 466  Q
    |||      |||||| |||||||| |||||||||||||| |||||||||||| |||| ||||    
T  231591 ttctgctttggatttatgtgttccaaaagggaattgtgtcatcattatggataatattttca 231530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 247248 - 247019
Alignment:
Q  19 aaatgcggcgatgagaattggaagtttattcctgaaatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggtagacaaaactg 118  Q
    |||||||| |||||||||||||||  ||| ||| | ||||| || || || ||||| ||  ||| ||||||||| |    ||||| ||||||||||||||    
T  247248 aaatgcggtgatgagaattggaaggctatacctcacatgtcggtttatttaggagacatttgtgttttcaaaggccgaccttatgcggtagacaaaactg 247149  T
Q  119 gacagactgttactgttggaccgta---tgactcaactgttcagttagtggctgaatctttgcttgctggcggggatattaaattcctagttgagagcaa 215  Q
    ||  ||| |||    |||||||| |   ||| || ||||| | |||||| |||||||||||| ||| ||| || |||||||||||| |||| ||||||||    
T  247148 gatggacagttggatttggaccggaggatgattccactgtccggttagttgctgaatctttggttggtggtggagatattaaattcttagtggagagcaa 247049  T
Q  216 gggtgatttgttgttagcagatgtttacga 245  Q
    ||||||||||||||||  ||||||||||||    
T  247048 gggtgatttgttgttaatagatgtttacga 247019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 251125 - 251356
Alignment:
Q  18 caaatgcggcgatgagaattggaagtttattcctgaaatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggtagacaaaact 117  Q
    ||||||||| |||||||||||||||  ||| ||| | ||||| |  || |||||||| ||  ||| ||||||||| |    ||||| ||||||||| |||    
T  251125 caaatgcggtgatgagaattggaaggctatacctaacatgtcggcttattttggagacatttgtgttttcaaaggccgaccttatgcggtagacaatact 251224  T
Q  118 ggacagactgttactgttg------gaccgtatgactcaactgttcagttagtggctgaatctttgcttgctggcggggatattaaattcctagttgaga 211  Q
    |||| ||| ||||||||||      ||||  | || || ||||| |||||||||||| |||||||| ||| ||| || |||||||||||| | || ||||    
T  251225 ggacggacagttactgttgaacttggacctgaggattccactgtccagttagtggctcaatctttggttggtggtggagatattaaattcttggtggaga 251324  T
Q  212 gcaagggtgatttgttgttagcagatgtttac 243  Q
    || |  ||||||||||||||||||||||||||    
T  251325 gcgacagtgatttgttgttagcagatgtttac 251356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 459
Target Start/End: Complemental strand, 4439890 - 4439822
Alignment:
Q  391 tgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattatggatgat 459  Q
    ||||| |||||||||||||||||||||||||||||| | |||||||||||||| ||| |||| ||||||    
T  4439890 tgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttattgatgat 4439822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 235516 - 235428
Alignment:
Q  19 aaatgcggcgatgagaattggaagtttattcctgaaatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggt 107  Q
    ||||| |||||||||||||||||  ||||||||| |||||| | ||| || ||||| ||||||| ||||||||| |||  |||||||||    
T  235516 aaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacatccgtgttttcaaaggccagccttatgtggt 235428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 443
Target Start/End: Complemental strand, 18991267 - 18991182
Alignment:
Q  358 ttaggggatagagttttgttcttggggtccctgtgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgt 443  Q
    |||||| |||| |||||||||||||||      ||||| ||||||||||||||||| ||||| | ||||  |||||||||||||||    
T  18991267 ttagggaatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatttatctgttgtcaaagggaattgtgt 18991182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 311 - 451
Target Start/End: Complemental strand, 7046949 - 7046809
Alignment:
Q  311 tgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcattttctgcttctgc 410  Q
    ||||||||||||| || ||||||||||||||| |||||||  |||  |||||||||| ||||||||||||||||      ||||| ||||||||||||      
T  7046949 tgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttcttt 7046850  T
Q  411 ttcggatttgtgtgttcccaaagggaattgtgtgatcatta 451  Q
    ||| ||||||| |||| ||||||||||||||||||||||||    
T  7046849 ttcagatttgtatgttgccaaagggaattgtgtgatcatta 7046809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 302 - 443
Target Start/End: Complemental strand, 7041615 - 7041474
Alignment:
Q  302 ggattgacatgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcattttc 401  Q
    |||||||  ||||||| ||||| || ||||||||||||||| |||||||| | |  ||||||||||| ||||||||||||||     | ||||| || ||    
T  7041615 ggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctc 7041516  T
Q  402 tgcttctgcttcggatttgtgtgttcccaaagggaattgtgt 443  Q
    || |||||||||||||||||| ||| ||||||||||||||||    
T  7041515 tgtttctgcttcggatttgtgcgttgccaaagggaattgtgt 7041474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 439
Target Start/End: Complemental strand, 7025876 - 7025732
Alignment:
Q  301 aggattgacatgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttg------gggtccctgtgtt 394  Q
    ||||||||  ||||||||||||| || ||||||||||||||| |||||||| |||  ||||| ||||| ||||||||||||      ||||   | ||||    
T  7025876 aggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggggttggtatgtt 7025777  T
Q  395 cattttctgcttctgcttcggatttgtgtgttcccaaagggaatt 439  Q
    | |||||||||| |||||| |||||||||||| ||||||||||||    
T  7025776 cgttttctgcttgtgcttcagatttgtgtgttgccaaagggaatt 7025732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 441
Target Start/End: Original strand, 9159491 - 9159637
Alignment:
Q  301 aggattgacatgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttc------ttggggtccctgtgtt 394  Q
    ||||||||  |||||||||||||||| ||||||||||||||| |||| ||  |||  ||||||||||| |||||||||      |||||||   | | ||    
T  9159491 aggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggtatatt 9159590  T
Q  395 cattttctgcttctgcttcggatttgtgtgttcccaaagggaattgt 441  Q
    | ||||||| ||||||||| |||||||||||| ||||||||||||||    
T  9159591 cgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgt 9159637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 7013087 - 7012990
Alignment:
Q  145 gactcaactgttcagttagtggctgaatctttgcttgctggcggggatattaaattcctagttgagagcaagggtgatttgttgttagcagatgttta 242  Q
    ||||||| ||| || |||||||||||| ||||| ||| ||||||||| || |||||| |||| |||||| |||  |||||||||||||||||||||||    
T  7013087 gactcaagtgtccaattagtggctgaacctttggttggtggcggggacatgaaattcttagtggagagcgaggaggatttgttgttagcagatgttta 7012990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 385
Target Start/End: Complemental strand, 7029933 - 7029849
Alignment:
Q  301 aggattgacatgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggt 385  Q
    ||||||||  ||||||||||||| || ||||||||||||||| |||||||| |||  || |||||||| ||||||||||||||||    
T  7029933 aggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttggggt 7029849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 385
Target Start/End: Complemental strand, 9170937 - 9170853
Alignment:
Q  301 aggattgacatgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggt 385  Q
    ||||||||  ||||||||||||| || ||||||||||||||| |||| ||  |||  ||||||||||| ||||||||||||||||    
T  9170937 aggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggt 9170853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 439
Target Start/End: Complemental strand, 7012930 - 7012796
Alignment:
Q  311 tgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttg------gggtccctgtgttcattttctgc 404  Q
    ||||||||||||| || ||||||||||||||| |||||||| | |  ||||| |||||  |||||||||||      ||||   | ||||| ||||||||    
T  7012930 tgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggtatgttcgttttctgc 7012831  T
Q  405 ttctgcttcggatttgtgtgttcccaaagggaatt 439  Q
     | ||||||||||||||||||| ||||||||||||    
T  7012830 ctgtgcttcggatttgtgtgttgccaaagggaatt 7012796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 7026008 - 7025926
Alignment:
Q  160 ttagtggctgaatctttgcttgctggcggggatattaaattcctagttgagagcaagggtgatttgttgttagcagatgttta 242  Q
    |||||||||||| ||||| |||  |||||||| || |||||| |||| |||||| |||| |||||||||||||| ||||||||    
T  7026008 ttagtggctgaacctttgattggcggcggggacatgaaattcttagtggagagcgagggggatttgttgttagcggatgttta 7025926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 212987 - 213033
Alignment:
Q  196 aaattcctagttgagagcaagggtgatttgttgttagcagatgttta 242  Q
    |||||| |||| |||||| |||||||||||||||||| |||||||||    
T  212987 aaattcttagtggagagcgagggtgatttgttgttagtagatgttta 213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 7030068 - 7029983
Alignment:
Q  157 cagttagtggctgaatctttgcttgctggcggggatattaaattcctagttgagagcaagggtgatttgttgttagcagatgttta 242  Q
    ||||||||||||||  ||||| ||| ||| ||  || | |||||| |||| |||||| |||| |||||||||||||| ||||||||    
T  7030068 cagttagtggctgagcctttggttggtggtggaaatgtgaaattcttagtggagagcgagggggatttgttgttagcggatgttta 7029983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 441
Target Start/End: Complemental strand, 9170835 - 9170791
Alignment:
Q  397 ttttctgcttctgcttcggatttgtgtgttcccaaagggaattgt 441  Q
    ||||||| ||||||||| |||||||||||| || |||||||||||    
T  9170835 ttttctgtttctgcttcagatttgtgtgtttcccaagggaattgt 9170791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 311 - 443
Target Start/End: Complemental strand, 9343955 - 9343823
Alignment:
Q  311 tgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcattttctgcttctgc 410  Q
    ||||||||||| | || | ||||||||||||| |||||||  | || ||||||||||| |||||||||||||||      ||||| ||||||||||||||    
T  9343955 tgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgc 9343856  T
Q  411 ttcggatttgtgtgttcccaaagggaattgtgt 443  Q
    |||||||||||||||||| | ||| ||||||||    
T  9343855 ttcggatttgtgtgttcctagaggaaattgtgt 9343823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 443
Target Start/End: Complemental strand, 41985721 - 41985606
Alignment:
Q  328 aaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcattttctgcttctgcttcggatttgtgtgttc 427  Q
    ||||||||||| ||| | ||||||||||  |||||||||||||||||||||||||||      ||||| ||||||||||||||||||||||||| ||||     
T  41985721 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttg 41985622  T
Q  428 ccaaagggaattgtgt 443  Q
     |||||| ||||||||    
T  41985621 tcaaaggaaattgtgt 41985606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 391 - 459
Target Start/End: Complemental strand, 9425603 - 9425535
Alignment:
Q  391 tgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattatggatgat 459  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||| ||||||    
T  9425603 tgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaattgtgtcatctttatcgatgat 9425535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 311 - 428
Target Start/End: Complemental strand, 9448424 - 9448307
Alignment:
Q  311 tgtttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcattttctgcttctgc 410  Q
    ||||||||||| | || ||||||||||| ||| |||||||  | || ||||||||||| |||||||||||||||      ||||| ||||||||||||||    
T  9448424 tgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgcttctgc 9448325  T
Q  411 ttcggatttgtgtgttcc 428  Q
    ||||||||||||| ||||    
T  9448324 ttcggatttgtgtcttcc 9448307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 9617549 - 9617610
Alignment:
Q  391 tgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattat 452  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||    
T  9617549 tgttcattttctgcttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttat 9617610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 9407396 - 9407344
Alignment:
Q  391 tgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgt 443  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  9407396 tgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaattgtgt 9407344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 458
Target Start/End: Original strand, 9494861 - 9494961
Alignment:
Q  358 ttaggggatagagttttgttcttggggtccctgtgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattatggatg 457  Q
    ||||||||||| |||||||||||||||      ||||| ||||||||||||||||| |||||||| ||| |||||||||||||||| ||| |||| ||||    
T  9494861 ttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatttgtgcgtttccaaagggaattgtgtcatctttattgatg 9494960  T
Q  458 a 458  Q
    |    
T  9494961 a 9494961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 9494635 - 9494781
Alignment:
Q  99 ttatgtggtagacaaaactggacagactgttactgttggaccgtatgactcaactgttcagttagtggctgaatctttgct---tgctggcggggatatt 195  Q
    |||||||||| |||||||||||| ||| | |||| |||||| | ||||||  ||| |  |||||||||||||||||||| |   || ||| ||||| ||     
T  9494635 ttatgtggtacacaaaactggacggacagctactcttggactggatgacttcactttcgagttagtggctgaatctttggtttctggtgggggggacatc 9494734  T
Q  196 aaattcctagttgagagcaagggtgatttgttgttagcagatgttta 242  Q
    |||||| |||| |||||  | |||||||||||||||| |||||||||    
T  9494735 aaattcttagtcgagagtgacggtgatttgttgttagtagatgttta 9494781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 9397815 - 9397763
Alignment:
Q  391 tgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgt 443  Q
    ||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||    
T  9397815 tgttcattttccgcttcagctttggatttgtgtgttgccaaagggaattgtgt 9397763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 440
Target Start/End: Original strand, 9655380 - 9655492
Alignment:
Q  328 aaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcattttctgcttctgcttcggatttgtgtgttc 427  Q
    ||||||||||| ||| ||||||||  ||  ||||||||||| |||||||| |||||       ||||| |||||||| || ||||||||||||||||||     
T  9655380 aaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatcagcttcggatttgtgtgttt 9655479  T
Q  428 ccaaagggaattg 440  Q
    |||||||||||||    
T  9655480 ccaaagggaattg 9655492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 440
Target Start/End: Original strand, 9626569 - 9626615
Alignment:
Q  394 tcattttctgcttctgcttcggatttgtgtgttcccaaagggaattg 440  Q
    ||||||||||| || |||||||||||||||||| |||||||||||||    
T  9626569 tcattttctgcatcagcttcggatttgtgtgtttccaaagggaattg 9626615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 9614039 - 9614100
Alignment:
Q  391 tgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattat 452  Q
    ||||||||||||||||||||||| ||| ||||| || ||||||| |||||||| ||| ||||    
T  9614039 tgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatctttat 9614100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 9646450 - 9646499
Alignment:
Q  391 tgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattg 440  Q
    ||||| |||||||| || |||||||||||||||||| |||||||||||||    
T  9646450 tgttcgttttctgcatcagcttcggatttgtgtgtttccaaagggaattg 9646499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 9432920 - 9432852
Alignment:
Q  397 ttttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattatggatgatatattc 465  Q
    ||||||||||| || ||||||||||||||| || ||||||||||| | ||| |||| |||||| |||||    
T  9432920 ttttctgcttcagcctcggatttgtgtgtttccgaagggaattgtatcatctttattgatgatgtattc 9432852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 452
Target Start/End: Complemental strand, 9353009 - 9352870
Alignment:
Q  313 tttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcattttctgcttctgctt 412  Q
    ||||||||| | || | ||||||||||||| ||||||||   | |||||||| ||| ||||||||  |||||      ||||| ||||||||||||| ||    
T  9353009 tttaagcttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctggtt 9352910  T
Q  413 cggatttgtgtgttcccaaagggaattgtgtgatcattat 452  Q
     |||| ||||| |||||||||| |||||||| ||| ||||    
T  9352909 gggatctgtgtcttcccaaaggaaattgtgtcatctttat 9352870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 441
Target Start/End: Complemental strand, 41980944 - 41980834
Alignment:
Q  331 gagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcattttctgcttctgcttcggatttgtgtgttccca 430  Q
    |||||||| ||| | |||||| |||  |||||||||||||||||||||||||||      ||||| |||| ||||||||||||  |||||| ||||  ||    
T  41980944 gagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttttgcttctgcttcaaatttgtctgttgtca 41980845  T
Q  431 aagggaattgt 441  Q
    |||| ||||||    
T  41980844 aaggaaattgt 41980834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 452
Target Start/End: Complemental strand, 9377116 - 9377055
Alignment:
Q  391 tgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattat 452  Q
    ||||| ||| |||||||||||| |||| ||||| |||||||||| |||||||| ||| ||||    
T  9377116 tgttcgtttcctgcttctgcttgggatctgtgtcttcccaaaggaaattgtgtcatctttat 9377055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 9402403 - 9402342
Alignment:
Q  397 ttttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattatggatga 458  Q
    |||||||| ||||| || |||||||||||||| |||||||||||| | ||| |||| |||||    
T  9402403 ttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatctttattgatga 9402342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 9420642 - 9420581
Alignment:
Q  397 ttttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattatggatga 458  Q
    |||||||| ||||| || |||||||||||||| |||||||||||| | ||| |||| |||||    
T  9420642 ttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatctttattgatga 9420581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 9416603 - 9416551
Alignment:
Q  391 tgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgt 443  Q
    ||||||||||||||||| || | |||| |||||||| | ||||||||||||||    
T  9416603 tgttcattttctgcttcagccttggatatgtgtgttactaaagggaattgtgt 9416551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 16011768 - 16011820
Alignment:
Q  391 tgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgt 443  Q
    ||||| |||||||||||||||||||||||| ||||  | || |||||||||||    
T  16011768 tgttcgttttctgcttctgcttcggatttgggtgtagcgaatgggaattgtgt 16011820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 33541915 - 33541813
Alignment:
Q  140 cgtatgactcaactgttcagttagtggctgaatctttgcttgctggcggggatattaaattcctagttgagagcaagggtgatttgttgttagcagatgt 239  Q
    |||||| ||| ||||||||||||||||||||||||||| ||| ||| || ||  | |||||| |||| |||||||||||||||||||||||||  |||||    
T  33541915 cgtatggctccactgttcagttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgt 33541816  T
Q  240 tta 242  Q
    |||    
T  33541815 tta 33541813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 465
Target Start/End: Complemental strand, 18571137 - 18571064
Alignment:
Q  392 gttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattatggatgatatattc 465  Q
    |||| ||||||  |||||||||||||||||||||| |||||||||||||||||||  ||||| || ||||||||    
T  18571137 gttctttttctatttctgcttcggatttgtgtgtttccaaagggaattgtgtgatttttatgaataatatattc 18571064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 447
Target Start/End: Complemental strand, 3695797 - 3695664
Alignment:
Q  313 tttaagcttaacgaaaaggagaagaagtggatgaagttggcgacattaggggatagagttttgttcttggggtccctgtgttcattttctgcttctgctt 412  Q
    ||||| ||||| || ||| |||||||||| || ||||||  ||  ||||||||||||||||||||||| ||   | | |||||||||||||||  |||||    
T  3695797 tttaaacttaatgagaagaagaagaagtg-atcaagttgtagagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgctt 3695699  T
Q  413 cggatttgtgtgttcccaaagggaattgtgtgatc 447  Q
    ||||||||| || | ||||||||||||||||||||    
T  3695698 cggatttgtctgctgccaaagggaattgtgtgatc 3695664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 20694387 - 20694448
Alignment:
Q  391 tgttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgtgatcattat 452  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||    
T  20694387 tgttcgttttctgcttctgcttcggatttgtgtgttgccaaagggaattgtgtcatctttat 20694448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 44688873 - 44688923
Alignment:
Q  393 ttcattttctgcttctgcttcggatttgtgtgttcccaaagggaattgtgt 443  Q
    |||||||||| || ||||||||||||||| | || ||||||||||||||||    
T  44688873 ttcattttctactactgcttcggatttgtctattgccaaagggaattgtgt 44688923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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