View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5470_low_12 (Length: 226)

Name: NF5470_low_12
Description: NF5470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5470_low_12
NF5470_low_12
[»] chr7 (6 HSPs)
chr7 (1-213)||(45976699-45976913)
chr7 (42-199)||(551853-552010)
chr7 (42-199)||(15644900-15645057)
chr7 (2-38)||(7309442-7309478)
chr7 (2-34)||(24046612-24046644)
chr7 (2-34)||(41975974-41976006)
[»] chr6 (8 HSPs)
chr6 (37-213)||(3550762-3550938)
chr6 (37-213)||(7082610-7082786)
chr6 (42-213)||(8809578-8809749)
chr6 (68-199)||(20013619-20013750)
chr6 (37-199)||(18588032-18588193)
chr6 (37-200)||(13649309-13649472)
chr6 (2-34)||(32250807-32250839)
chr6 (129-199)||(7956952-7957022)
[»] chr2 (7 HSPs)
chr2 (37-201)||(36552326-36552490)
chr2 (42-201)||(44029505-44029664)
chr2 (37-115)||(37532661-37532739)
chr2 (2-34)||(41504893-41504925)
chr2 (1-34)||(17736945-17736978)
chr2 (2-34)||(3677310-3677342)
chr2 (2-34)||(35203340-35203372)
[»] chr8 (5 HSPs)
chr8 (42-199)||(37718530-37718687)
chr8 (42-201)||(17971534-17971693)
chr8 (37-156)||(37322239-37322358)
chr8 (84-169)||(28493309-28493394)
chr8 (2-34)||(31408079-31408111)
[»] chr1 (4 HSPs)
chr1 (37-170)||(9990734-9990867)
chr1 (77-117)||(25388508-25388548)
chr1 (37-100)||(27800923-27800986)
chr1 (2-34)||(24529628-24529660)
[»] chr3 (5 HSPs)
chr3 (37-212)||(3168588-3168763)
chr3 (37-199)||(14853588-14853750)
chr3 (87-211)||(25783230-25783352)
chr3 (96-166)||(18764448-18764518)
chr3 (37-113)||(26535720-26535796)
[»] chr4 (5 HSPs)
chr4 (45-213)||(7098173-7098341)
chr4 (37-117)||(43127962-43128042)
chr4 (5-34)||(14611172-14611201)
chr4 (104-201)||(47129377-47129474)
chr4 (2-34)||(18404840-18404872)
[»] chr5 (2 HSPs)
chr5 (37-201)||(32239456-32239620)
chr5 (42-199)||(17673770-17673927)
[»] scaffold0024 (1 HSPs)
scaffold0024 (37-212)||(87489-87663)
[»] scaffold0005 (1 HSPs)
scaffold0005 (5-34)||(206176-206205)
[»] scaffold0008 (1 HSPs)
scaffold0008 (2-34)||(49393-49425)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 45976913 - 45976699
Alignment:
Q  1 ccaatttaagtgggttaatttagcttcttaaaaagaaa--tactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctatta 98  Q
    ||||||||||| |||||||||| ||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  45976913 ccaatttaagtaggttaatttaacttcttaaaaaaaaaaatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattg 45976814  T
Q  99 tttcgttcattccataaaatctaagcagtaagaagccaaataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45976813 tttcgttcattccataaaatctaagcagtaagaagccaaataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataa 45976714  T
Q  199 agttatatgaaatat 213  Q
    |||||||||||||||    
T  45976713 agttatatgaaatat 45976699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 552010 - 551853
Alignment:
Q  42 tttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagccaaataa 141  Q
    |||||||||||||  || ||  ||| |||||||| |||||||||||||||| ||| ||||| |||||||||||||| | |  ||||||| ||||||||||    
T  552010 tttactttgtctaaaagctgcactaaagagcattctttctgtttaaataatatatcatttctttcattccataaaacccagacagtaagtagccaaataa 551911  T
Q  142 gttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaa 199  Q
    |||| | ||| |  ||||  ||||||||| ||| |||| ||| |||||||||||||||    
T  551910 gttgcaaaaaggttctccttgatttcaaaccacctgtagaataagtaaactgaataaa 551853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 15644900 - 15645057
Alignment:
Q  42 tttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagccaaataa 141  Q
    ||||||||||||||||| ||||||| |||  | |  || || ||||||||||||  ||||| |||||| ||||   || || | || ||||| |||||||    
T  15644900 tttactttgtctagtagctgatctaaagatgactccttttgattaaataatctagcatttctttcatttcatatggtccaaacggtcagaagtcaaataa 15644999  T
Q  142 gttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaa 199  Q
    | |||||||||||||  |  ||||||| | ||| |||||| | |||||| ||||||||    
T  15645000 gctgaagaaaagaccatcttgatttcataacacctgtatagtgagtaaattgaataaa 15645057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 7309442 - 7309478
Alignment:
Q  2 caatttaagtgggttaatttagcttcttaaaaagaaa 38  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  7309442 caatttaagtgggctaatttagcttcttcaaaagaaa 7309478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 24046612 - 24046644
Alignment:
Q  2 caatttaagtgggttaatttagcttcttaaaaa 34  Q
    ||||||||||||| |||||||||||||||||||    
T  24046612 caatttaagtgggctaatttagcttcttaaaaa 24046644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 41975974 - 41976006
Alignment:
Q  2 caatttaagtgggttaatttagcttcttaaaaa 34  Q
    ||||||||||||| |||||||||||||||||||    
T  41975974 caatttaagtgggctaatttagcttcttaaaaa 41976006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 3550762 - 3550938
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagcca 136  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||||||    
T  3550762 aatattttactttgtctagtagttgatctatagagtattctttctgtttaaataatctattgttttgttcattccataaaatccaagcggtaagaagcca 3550861  T
Q  137 aataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaagttatatgaaatat 213  Q
    ||| || ||||||||||||||| ||||||||||| ||| ||||||||||||||| |||||||||| || ||||||||    
T  3550862 aatcagctgaagaaaagacctctgcgatttcaaaccacctgtataattagtaaaatgaataaagtgatctgaaatat 3550938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 7082610 - 7082786
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagcca 136  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || |||||| ||||||||||| |||| |||||||||||    
T  7082610 aatactttactttgtctagtagttgatctatagagcattctttctatttaaataatctattgttccgttcagtccataaaatccaagccgtaagaagcca 7082709  T
Q  137 aataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaagttatatgaaatat 213  Q
    ||| || ||||||||||||||   |||||||||| ||| |||||||||||||||||||||| ||| || ||||||||    
T  7082710 aatcagctgaagaaaagacctttacgatttcaaaccacctgtataattagtaaactgaatagagtgatttgaaatat 7082786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 8809749 - 8809578
Alignment:
Q  42 tttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagccaaataa 141  Q
    |||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||| || |||||  ||||||||||| |||| | |||||||||||| |    
T  8809749 tttactttgtctagtagttgttctacagagcattctttctatttaaataatctattgttccgttcggtccataaaatccaagccgcaagaagccaaatca 8809650  T
Q  142 gttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaagttatatgaaatat 213  Q
    | |||||||||||||||| || ||||||  | | |||||||||||||||||||||| ||| || ||||||||    
T  8809649 gctgaagaaaagacctccacggtttcaatccccctgtataattagtaaactgaatagagtgatctgaaatat 8809578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 20013750 - 20013619
Alignment:
Q  68 agagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagccaaataagttgaagaaaagacctccgcgatttc 167  Q
    |||||||| ||||| |||||||||||||  ||||| |||||||||||||| | ||  ||||||||||||||||||||| | ||| ||||||| ||| |||    
T  20013750 agagcattctttctatttaaataatctagcatttctttcattccataaaacccaaatagtaagaagccaaataagttgcacaaaggacctcctcgacttc 20013651  T
Q  168 aaatcacatgtataattagtaaactgaataaa 199  Q
    ||  |||||||||||||| |||||||||||||    
T  20013650 aagccacatgtataattaataaactgaataaa 20013619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 18588032 - 18588193
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagcca 136  Q
    ||||||||||||||||||||||||| || |||||  | | ||| |||||||||||||||  ||||| |||||||||||  ||| || | || |||||| |    
T  18588032 aatactttactttgtctagtagttgttc-atagatgactctttttgtttaaataatctagcatttctttcattccatatgatccaaacggtcagaagcga 18588130  T
Q  137 aataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaa 199  Q
    |||||| ||||||||||||| ||  ||||||| | ||| |||||| | | |||| ||||||||    
T  18588131 aataagctgaagaaaagaccgccttgatttcataacacctgtatagtgaataaattgaataaa 18588193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 13649472 - 13649309
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagcca 136  Q
    |||| ||||||||||||||||| |||||||||||    | ||| |||||||||||| ||  ||||| |||||||||||  ||| ||   || | ||||||    
T  13649472 aatattttactttgtctagtagctgatctatagatggctctttttgtttaaataatttagcatttctttcattccatatgatccaaatggtcataagcca 13649373  T
Q  137 aataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaag 200  Q
    |||||| |||| |||||||| ||  ||||||| | ||| |||||| | |||||||| |||||||    
T  13649372 aataagctgaataaaagaccgccttgatttcataacacctgtatagtgagtaaactaaataaag 13649309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 32250839 - 32250807
Alignment:
Q  2 caatttaagtgggttaatttagcttcttaaaaa 34  Q
    |||||||||||||||||||||||||||||||||    
T  32250839 caatttaagtgggttaatttagcttcttaaaaa 32250807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 7957022 - 7956952
Alignment:
Q  129 agaagccaaataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaa 199  Q
    |||||||||||||| |||||||||||||  |  ||||||| | ||| |||||| | |||||||||||||||    
T  7957022 agaagccaaataagctgaagaaaagaccgtcttgatttcataacacctgtatagtgagtaaactgaataaa 7956952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 36552326 - 36552490
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagcca 136  Q
    |||| |||||||||| |||||| ||| |||||||||||| ||| |||||||||||| || |||||| |||||||||||||||| || |||| ||||||||    
T  36552326 aatattttactttgtttagtagctgaactatagagcattctttttgtttaaataatatagtatttctttcattccataaaatccaaacagttagaagcca 36552425  T
Q  137 aataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaagt 201  Q
    |||||| |||||||| |||||||||||||||||| ||| |||||| | || ||||||||||||||    
T  36552426 aataagctgaagaaaggacctccgcgatttcaaaccacctgtatagtgagcaaactgaataaagt 36552490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 201
Target Start/End: Complemental strand, 44029664 - 44029505
Alignment:
Q  42 tttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagccaaataa 141  Q
    ||||||||||||| ||| ||||||| || ||||| |||||||||||||||||||  ||||| |||||||||||| | | |  | || |||||||||||||    
T  44029664 tttactttgtctaatagctgatctagagtgcattctttctgtttaaataatctagcatttctttcattccataacacccagactgtgagaagccaaataa 44029565  T
Q  142 gttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaagt 201  Q
    | || | |||||| || || ||||||||| ||| | ||||||||||||||||||||||||    
T  44029564 gctgcataaaagatcttcgggatttcaaaacacctatataattagtaaactgaataaagt 44029505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 37532739 - 37532661
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataa 115  Q
    |||| |||||||| | |||||||||||||||||| |||| ||| ||||||||||||||||||||| |||| ||||||||    
T  37532739 aatattttactttttgtagtagttgatctatagaacattctttttgtttaaataatctattattttgttcgttccataa 37532661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 41504925 - 41504893
Alignment:
Q  2 caatttaagtgggttaatttagcttcttaaaaa 34  Q
    |||||||||||||||||||||||||||||||||    
T  41504925 caatttaagtgggttaatttagcttcttaaaaa 41504893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17736978 - 17736945
Alignment:
Q  1 ccaatttaagtgggttaatttagcttcttaaaaa 34  Q
    |||||||||||||||||||||| |||||||||||    
T  17736978 ccaatttaagtgggttaatttaacttcttaaaaa 17736945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 3677342 - 3677310
Alignment:
Q  2 caatttaagtgggttaatttagcttcttaaaaa 34  Q
    ||||||||||| |||||||||||||||||||||    
T  3677342 caatttaagtgagttaatttagcttcttaaaaa 3677310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 35203372 - 35203340
Alignment:
Q  2 caatttaagtgggttaatttagcttcttaaaaa 34  Q
    |||||||||||||||||||||||||||| ||||    
T  35203372 caatttaagtgggttaatttagcttcttcaaaa 35203340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 37718530 - 37718687
Alignment:
Q  42 tttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagccaaataa 141  Q
    |||||||||||||  || ||  ||| |||||||||||||| ||||||||||| |   |||| |||||||||||||| | || |||||||||| |||||||    
T  37718530 tttactttgtctaaaagctgcactaaagagcattatttctatttaaataatccagcgtttctttcattccataaaacccaaacagtaagaaggcaaataa 37718629  T
Q  142 gttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaa 199  Q
    |||| | ||| ||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  37718630 gttgcaaaaaggacctcctcgatttcaaaccacttgtataattagtaaactgaataaa 37718687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 201
Target Start/End: Complemental strand, 17971693 - 17971534
Alignment:
Q  42 tttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagccaaataa 141  Q
    ||||||||||||| |||  || ||| ||| |||| |||||||||||||||||||  ||||| |||||||||||| | | |  |  | |||||||||||||    
T  17971693 tttactttgtctaatagcagaactagagatcattctttctgtttaaataatctagcatttctttcattccataacacccatactattagaagccaaataa 17971594  T
Q  142 gttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaagt 201  Q
    | || | ||| || || || |||||| |||||| ||||||||||||||||||||||||||    
T  17971593 gctgcataaaggatcttcgggatttcgaatcacctgtataattagtaaactgaataaagt 17971534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 37322239 - 37322358
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagcca 136  Q
    |||| |||||||||||||||||||||||||||||  | | ||| ||| |||||||||||  |||||||||||||||||  ||| || | || ||||||||    
T  37322239 aatattttactttgtctagtagttgatctatagatgactctttttgtataaataatctagcatttcgttcattccatatgatccaaacggtcagaagcca 37322338  T
Q  137 aataagttgaagaaaagacc 156  Q
    |||||  |||||||||||||    
T  37322339 aataaactgaagaaaagacc 37322358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 28493309 - 28493394
Alignment:
Q  84 ttaaataatctattatttcgttcattccataaaatctaagcagtaagaagccaaataagttgaagaaaagacctccgcgatttcaa 169  Q
    ||||| || ||||||||| | |||||||| ||| || || ||||||| ||||||||||| ||||  |||||||| | |||||||||    
T  28493309 ttaaacaacctattattttgctcattccacaaagtccaaacagtaaggagccaaataagctgaaagaaagaccttctcgatttcaa 28493394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 31408111 - 31408079
Alignment:
Q  2 caatttaagtgggttaatttagcttcttaaaaa 34  Q
    ||||||||| |||||||||||||||||||||||    
T  31408111 caatttaagggggttaatttagcttcttaaaaa 31408079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 9990734 - 9990867
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagcca 136  Q
    |||| ||||||||||||||||| ||| |||| |||||||  ||||| ||||||||||||||||||| |||||||||||  | | || |||||||||||||    
T  9990734 aatattttactttgtctagtagctgaactattgagcattccttctgattaaataatctattatttctttcattccataggacccaaacagtaagaagcca 9990833  T
Q  137 aataagttgaagaaaagacctccgcgatttcaaa 170  Q
    || ||| |||||||||||||| ||||||||||||    
T  9990834 aacaagctgaagaaaagacctgcgcgatttcaaa 9990867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 25388508 - 25388548
Alignment:
Q  77 tttctgtttaaataatctattatttcgttcattccataaaa 117  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  25388508 tttctgtttaaataatctattatttttttcattccataaaa 25388548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 27800923 - 27800986
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatt 100  Q
    ||||||||| |||||||||||| ||   |||||| ||||  |||||||||||||||||||||||    
T  27800923 aatactttattttgtctagtagctgtcttatagaacatttcttctgtttaaataatctattatt 27800986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 24529628 - 24529660
Alignment:
Q  2 caatttaagtgggttaatttagcttcttaaaaa 34  Q
    ||||||||||||||||||||| |||||||||||    
T  24529628 caatttaagtgggttaatttaacttcttaaaaa 24529660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 212
Target Start/End: Original strand, 3168588 - 3168763
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagcca 136  Q
    |||| ||||||||||||||||||||| |||| || ||||  |||||||||||||||||| | |||| |||||||||||| | | || ||||||| || ||    
T  3168588 aatattttactttgtctagtagttgaactattgaacattccttctgtttaaataatctactgtttctttcattccataagacccaaacagtaaggagaca 3168687  T
Q  137 aataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaagttatatgaaata 212  Q
    || ||| |||||||||||| | |||||||||||| ||| |||  ||| |||||||||| |||||| || |||||||    
T  3168688 aacaagctgaagaaaagacttgcgcgatttcaaaccacctgtgcaataagtaaactgagtaaagtgatctgaaata 3168763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 14853588 - 14853750
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagcca 136  Q
    |||||||||||||||||||||| ||||||| |||  | |  || || ||||||||||||  ||||| |||||||||||   || || | || ||||||||    
T  14853588 aatactttactttgtctagtagctgatctaaagatgactccttttgattaaataatctagcatttctttcattccatatggtccaaacggttagaagcca 14853687  T
Q  137 aataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaa 199  Q
    |||||| |||||||||||||  |  ||||||| | ||| |||||| | |||||||||||||||    
T  14853688 aataagctgaagaaaagaccgtcttgatttcataacacctgtatagtgagtaaactgaataaa 14853750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 25783230 - 25783352
Alignment:
Q  87 aataatctattatttcgttcattccataaaatctaagcagtaagaagccaaataagttgaagaaaagacctccgcgatttcaaatcacatgtataattag 186  Q
    ||||| || |||||| ||||||||||||||||| || | | ||||||||||||||| || || || |||| ||| ||||||||| ||| |  | |||  |    
T  25783230 aataacctgttattttgttcattccataaaatccaaacggcaagaagccaaataagctggaggaaggaccgccgtgatttcaaaccacgttgaaaat--g 25783327  T
Q  187 taaactgaataaagttatatgaaat 211  Q
    | ||||||||||||| |||||||||    
T  25783328 tcaactgaataaagtgatatgaaat 25783352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 18764448 - 18764518
Alignment:
Q  96 ttatttcgttcattccataaaatctaagcagtaagaagccaaataagttgaagaaaagacctccgcgattt 166  Q
    |||||||||||||||||||||| | |||  | ||||||||||||||||||  | || |||| |||||||||    
T  18764448 ttatttcgttcattccataaaacccaagttgcaagaagccaaataagttggtggaaggaccgccgcgattt 18764518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 26535720 - 26535796
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccat 113  Q
    |||||||||||||||||| ||| ||||||| |||  ||| ||| || ||||| ||||||  ||||| ||||||||||    
T  26535720 aatactttactttgtctaatagctgatctaaagataattctttttgcttaaacaatctagcatttctttcattccat 26535796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 213
Target Start/End: Original strand, 7098173 - 7098341
Alignment:
Q  45 actttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagccaaataagtt 144  Q
    |||| ||||| ||| ||||||||  | |||| ||| |||||||||||||| |||||||||||||||||||||||| ||  |||||| ||||||| |||      
T  7098173 acttagtctaatagctgatctatgtaacattctttgtgtttaaataatctgttatttcgttcattccataaaatccaactagtaaggagccaaacaagcg 7098272  T
Q  145 gaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaagttatatgaaatat 213  Q
    | |||||||||||  | | ||||||| ||| ||| |||| | |||| ||| |||||| |||||||||||    
T  7098273 ggagaaaagacctttgtgctttcaaaccacctgtgtaataaataaattgattaaagtgatatgaaatat 7098341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 43128042 - 43127962
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaa 117  Q
    |||| ||||||||||||||||| ||| | ||||| |||| |||||||||||||||| ||||||||| ||||||||||||||    
T  43128042 aatattttactttgtctagtagctgagccatagaacattctttctgtttaaataatatattatttctttcattccataaaa 43127962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 14611172 - 14611201
Alignment:
Q  5 tttaagtgggttaatttagcttcttaaaaa 34  Q
    ||||||||||||||||||||||||||||||    
T  14611172 tttaagtgggttaatttagcttcttaaaaa 14611201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 47129377 - 47129474
Alignment:
Q  104 ttcattccataaaatctaagcagtaagaagccaaataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaagt 201  Q
    |||||||||||| | | || | |||||||||||  |||| || | ||| || ||||| |||||| || ||| ||||||||||||||| ||||||||||    
T  47129377 ttcattccataacacccaaactgtaagaagccatgtaagctgcaaaaaggatctccgggatttcgaaccacctgtataattagtaaaatgaataaagt 47129474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 18404872 - 18404840
Alignment:
Q  2 caatttaagtgggttaatttagcttcttaaaaa 34  Q
    |||||||||||||||| ||||||||||||||||    
T  18404872 caatttaagtgggttagtttagcttcttaaaaa 18404840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 32239456 - 32239620
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagcca 136  Q
    |||||||||||||||||||||| |||||||||||  | | ||| |||||||||||||||  ||||| ||||||| |||  ||| || | || ||||| ||    
T  32239456 aatactttactttgtctagtagctgatctatagataactctttttgtttaaataatctagcatttctttcattctatatgatccaaacggtcagaagtca 32239555  T
Q  137 aataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaagt 201  Q
    |||||| |||||||| ||||  |  ||||||| | ||| |||||| | || ||||||||||||||    
T  32239556 aataagctgaagaaatgaccgtcttgatttcataacacctgtatagtgagaaaactgaataaagt 32239620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 17673770 - 17673927
Alignment:
Q  42 tttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagccaaataa 141  Q
    |||||||||||||  || ||  ||| |||||||| |||||||||||||||| |   || || |||||||||||||| | || |||||||||| ||||| |    
T  17673770 tttactttgtctaaaagctgcactaaagagcattctttctgtttaaataatttggcatatctttcattccataaaacccaaacagtaagaagtcaaatta 17673869  T
Q  142 gttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaa 199  Q
     |||   ||| ||||||| |||||||||| ||| |||| |||||||||| ||||||||    
T  17673870 attgcgaaaaggacctcctcgatttcaaaccacttgtagaattagtaaaatgaataaa 17673927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 87663 - 87489
Alignment:
Q  37 aatactttactttgtctagtagttgatctatagagcattatttctgtttaaataatctattatttcgttcattccataaaatctaagcagtaagaagcca 136  Q
    |||| ||||||||||| ||||||||| ||||  ||||||  || || ||||||||||||||||||| ||||||||||   | | || |||||||||||||    
T  87663 aatattttactttgtccagtagttgaactattaagcattccttttgattaaataatctattatttctttcattccat-ggacccaaacagtaagaagcca 87565  T
Q  137 aataagttgaagaaaagacctccgcgatttcaaatcacatgtataattagtaaactgaataaagttatatgaaata 212  Q
    || ||| ||| ||||| || |  ||| ||||||| ||| |||  ||| |||||||| | |||||| || |||||||    
T  87564 aacaagctgatgaaaaaacttgtgcgttttcaaaccacctgtgcaataagtaaactaagtaaagtgatctgaaata 87489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 206205 - 206176
Alignment:
Q  5 tttaagtgggttaatttagcttcttaaaaa 34  Q
    ||||||||||||||||||||||||||||||    
T  206205 tttaagtgggttaatttagcttcttaaaaa 206176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 49393 - 49425
Alignment:
Q  2 caatttaagtgggttaatttagcttcttaaaaa 34  Q
    ||||||||||||||||||||| |||||||||||    
T  49393 caatttaagtgggttaatttaacttcttaaaaa 49425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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