View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5470_low_3 (Length: 456)
Name: NF5470_low_3
Description: NF5470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5470_low_3 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 215 - 456
Target Start/End: Complemental strand, 11007020 - 11006778
Alignment:
| Q |
215 |
gtctatggtggatcatctaaaatgttggtccaacgtatacatttgtggttaaggttaacctagatattaaataacgttttagaattt-taggaccaaaat |
313 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||||||||||||| || |||||||||||||||| || ||||||| ||||||||||| | |||||||||| |
|
|
| T |
11007020 |
gtctatggtgaattatctaaaatgttggttcaacgtatacatttctgattaaggttaacctagagatcaaataactttttagaatttatgggaccaaaat |
11006921 |
T |
|
| Q |
314 |
gaaactaaaattagccgggaattaaatgaccaatttaaactagtatttgcctatttcctgaattgcaaaagcatgtctttcatacgtatatgggtggcta |
413 |
Q |
| |
|
|||||||||| ||||| || || ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
11006920 |
gaaactaaaactagccagggatcaaatgaccaatttaaactagtttttggctatttcctgaattgcaaaagcatgtctttcatccgtttatgggtggcta |
11006821 |
T |
|
| Q |
414 |
attttgaagttattaaacacacaagatgtatttttatctttca |
456 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||||| |
|
|
| T |
11006820 |
attttgaagttattaaacacacacgatgtattgttctctttca |
11006778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 11007237 - 11007084
Alignment:
| Q |
1 |
ggtgggagatgaattgactttctcgaatatacannnnnnnaatatgatgaaggtgtataaaggatatgtcgaagatgatatagagaaagaaagatgatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11007237 |
ggtgggagatgaattgactttctcgaatatacatttttttaatatgatgaaggtgtataaaggatatgtcgaagatgatatagagaaagaaagatgatga |
11007138 |
T |
|
| Q |
101 |
ataaaagggaaat---tagttgttgattgttcgctgttagatacaatggatctc |
151 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
11007137 |
ataaaagggaaataaatagttgttgatggttcgctgttagatacaatgaatctc |
11007084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 42877899 - 42877866
Alignment:
| Q |
110 |
aaattagttgttgattgttcgctgttagatacaa |
143 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
42877899 |
aaattagttgttgatggttcgctgttagatacaa |
42877866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University