View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5471-Insertion-1 (Length: 821)
Name: NF5471-Insertion-1
Description: NF5471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5471-Insertion-1 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 670; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 8 - 821
Target Start/End: Complemental strand, 44132958 - 44132167
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44132958 |
cttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacgatcaagtgagtaatct |
44132859 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
|||||||||||||||||| ||| ||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44132858 |
ttgactttggttgaccccattcttttatggccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
44132759 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44132758 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaat |
44132659 |
T |
|
| Q |
308 |
tatgaaaagatgatattagttcaacaaaacttgggtgttaagaaaccaatgtaaagatagcaaaatatatttaaatggaaagtatctatggtagagggaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44132658 |
tatgaaaagatgatattagttcaacaaaacttgggtgttaagaaaccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaa |
44132559 |
T |
|
| Q |
408 |
aaaatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaaca |
507 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44132558 |
aaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaaca |
44132459 |
T |
|
| Q |
508 |
caattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatatctt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44132458 |
caattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatatctt |
44132359 |
T |
|
| Q |
608 |
tggtagcaaatgaaattaatgaaaatattgtaatttgaactgagttggtttcatttgtagtacttgttgtagttaaagaaagagaaagggtgaaggaaga |
707 |
Q |
| |
|
|||||||| ||||||| | || ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44132358 |
tggtagca---------aatgaaagt-------------ctcagttggttttgtttgtagtacttgttgtaattaaagaaagagaaagggtgaaggaaga |
44132281 |
T |
|
| Q |
708 |
gtgttgtggtggaaagatggtatgtgatgagatggttttatatggaggaatgagtggaagggttggtagctgaacatcacgtgtttgagtaaaacgttat |
807 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44132280 |
gtgttgtggtggaaagatggtatgggatgagatggttttatatggaggaatgagtggaagggttggtagctgaacatcacgtgtttgagtaaaacgttat |
44132181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 8 - 821
Target Start/End: Complemental strand, 44141380 - 44140589
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44141380 |
cttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacgatcaagtgagtaatct |
44141281 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
|||||||||||||||||| ||| ||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44141280 |
ttgactttggttgaccccattcttttatggccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
44141181 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44141180 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaat |
44141081 |
T |
|
| Q |
308 |
tatgaaaagatgatattagttcaacaaaacttgggtgttaagaaaccaatgtaaagatagcaaaatatatttaaatggaaagtatctatggtagagggaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44141080 |
tatgaaaagatgatattagttcaacaaaacttgggtgttaagaaaccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaa |
44140981 |
T |
|
| Q |
408 |
aaaatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaaca |
507 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44140980 |
aaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaaca |
44140881 |
T |
|
| Q |
508 |
caattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatatctt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44140880 |
caattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatatctt |
44140781 |
T |
|
| Q |
608 |
tggtagcaaatgaaattaatgaaaatattgtaatttgaactgagttggtttcatttgtagtacttgttgtagttaaagaaagagaaagggtgaaggaaga |
707 |
Q |
| |
|
|||||||| ||||||| | || ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44140780 |
tggtagca---------aatgaaagt-------------ctcagttggttttgtttgtagtacttgttgtaattaaagaaagagaaagggtgaaggaaga |
44140703 |
T |
|
| Q |
708 |
gtgttgtggtggaaagatggtatgtgatgagatggttttatatggaggaatgagtggaagggttggtagctgaacatcacgtgtttgagtaaaacgttat |
807 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44140702 |
gtgttgtggtggaaagatggtatgggatgagatggttttatatggaggaatgagtggaagggttggtagctgaacatcacgtgtttgagtaaaacgttat |
44140603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 8 - 817
Target Start/End: Complemental strand, 44128753 - 44127967
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44128753 |
cttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacgatcaagtgagtaatct |
44128654 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
|||||||||||||||||| ||| ||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44128653 |
ttgactttggttgaccccattcttttatggccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
44128554 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44128553 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaat |
44128454 |
T |
|
| Q |
308 |
tatgaaaagatgatattagttcaacaaaacttgggtgttaagaaaccaatgtaaagatagcaaaatatatttaaatggaaagtatctatggtagagggaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44128453 |
tatgaaaagatgatattagttcaacaaaacttgggtgttaagaaaccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaa |
44128354 |
T |
|
| Q |
408 |
aaaatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaaca |
507 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44128353 |
aaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaaca |
44128254 |
T |
|
| Q |
508 |
caattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatatctt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44128253 |
caattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatatctt |
44128154 |
T |
|
| Q |
608 |
tggtagcaaatgaaattaatgaaaatattgtaatttgaactgagttggtttcatttgtagtacttgttgtagttaaagaaagagaaagggtgaaggaaga |
707 |
Q |
| |
|
|||||||| ||||||| | || ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
44128153 |
tggtagca---------aatgaaagt-------------ctcagttggttttgtttgtagtacttgttgtaattaaagaaagagaa-gggtgaaggaaga |
44128077 |
T |
|
| Q |
708 |
gtgttgtggtggaaagatggtatgtgatgagatggttttatatggaggaatgagtggaagggttggtagctgaacatcacgtgtttgagt-aaaacgtta |
806 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||||||||||| ||| | |||||| ||||| |||||||||||| ||||| ||| || ||||| ||| |
|
|
| T |
44128076 |
gtgttgtagtggaaagatg-tatggaatgagatggttttatatgaagggaagagtggcagggtaggtagctgaacagcacgttttttggtaaaaacatta |
44127978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-135; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 1505153 - 1504829
Alignment:
| Q |
11 |
ttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatctttg |
110 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
1505153 |
ttcacatatgggcgaagacctaagagtttggtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacaattaagtgagtaatctttg |
1505054 |
T |
|
| Q |
111 |
actttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatgaagg |
210 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||| || ||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1505053 |
actttggctgaccccattcttttatagcttttacggcagcctcctttcctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaagg |
1504954 |
T |
|
| Q |
211 |
tgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattat |
310 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
1504953 |
tgccatgtattcacaaacactgggattctcttttaaaatctcctctgttaggtacatgtatcttctcttaatcatagatttatcacctgaaggtaattat |
1504854 |
T |
|
| Q |
311 |
gaaaagatgatattagttcaacaaa |
335 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
1504853 |
gaagagatgatattagttcaacaaa |
1504829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 1492347 - 1492053
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
1492347 |
ctttttacatatggacgaagacctaagagtttagtgagttgataatcggccccaggcatgtctacaccgcttgtggtgcaaacgattaagtgagtaatct |
1492248 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
1492247 |
ttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatga |
1492148 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaag |
302 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||| || |||||||| ||||| |||||||||| |
|
|
| T |
1492147 |
aggtgccatgtattcacaaacattaggattctcttttaaaatctcctctgttagatacatgtatcttcttttgatcatggatttgtcacctgaag |
1492053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 1478175 - 1477884
Alignment:
| Q |
11 |
ttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatctttg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
1478175 |
ttcacatatggacgaagacctaagagtttggtgagttggtaatcagcgccaggcatgtctacaccacttgtggtgcaaaagatcaagtgtgtaatctttg |
1478076 |
T |
|
| Q |
111 |
actttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatgaagg |
210 |
Q |
| |
|
| |||||||| |||| ||| |||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
1478075 |
attttggttggccccattcttttatagctttcactgcagcctcctttcctagtctaggtacttctaccaccaccatgtcctgcctagcatccaatgacgg |
1477976 |
T |
|
| Q |
211 |
tgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaag |
302 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||| || || || || ||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
1477975 |
tgccatgtattcacatacacttggattttctttcaaaatttcttcggtaagatacatgtatctcctcttgatcatggatttatcacctgaag |
1477884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 1482369 - 1482078
Alignment:
| Q |
11 |
ttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatctttg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||| || ||||| |||||||||| |
|
|
| T |
1482369 |
ttcacatatggacgaagacctaagagttttgtgagttggtaatcggcaccaggcatgtctacaccacttgtggtacaaaatattaagtgtgtaatctttg |
1482270 |
T |
|
| Q |
111 |
actttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatgaagg |
210 |
Q |
| |
|
| |||||||| |||| ||| |||||||| ||||||||||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482269 |
attttggttggccccattcttttatagccttcactgcagcctcctttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaagg |
1482170 |
T |
|
| Q |
211 |
tgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaag |
302 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||||||||| || || || ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1482169 |
tgccatgtattcgcatacactaggattttctttcaaaatctcttcagtaagatacatgtatctcctcttgatcatagatttatcacctgaag |
1482078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 405 - 596
Target Start/End: Complemental strand, 1504542 - 1504351
Alignment:
| Q |
405 |
gaaaaaatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttca |
504 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
1504542 |
gaaaaaacacttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttca |
1504443 |
T |
|
| Q |
505 |
acacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccat |
596 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||| |||||||||||||| |||||||| || ||||| |||||||||||||| ||||| ||||| |
|
|
| T |
1504442 |
acacaatttggtggatttgcagtgccaatggccaaaatggttgcaggaccttctgctctctgagccttgcgaatttcagatacactcaccat |
1504351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 411 - 613
Target Start/End: Complemental strand, 1491772 - 1491570
Alignment:
| Q |
411 |
atacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaa |
510 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1491772 |
atacttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacag |
1491673 |
T |
|
| Q |
511 |
ttggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatatctttgg |
610 |
Q |
| |
|
|| ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| ||| ||| ||||| |
|
|
| T |
1491672 |
tttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaatttcagatacactcaccatcttggtatttttgg |
1491573 |
T |
|
| Q |
611 |
tag |
613 |
Q |
| |
|
||| |
|
|
| T |
1491572 |
tag |
1491570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 1509303 - 1509009
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
||||| |||||||| |||||||||| ||||| || ||||| |||| |||||||| ||| |||||||||||||||||||||| ||| || || ||||||| |
|
|
| T |
1509303 |
ctttttacatatgggtgaagacctaaaagtttggtaagttgataatgagctccagacatatcaacaccacttgtggtgcaaaagattaaatgtgtaatct |
1509204 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
|||| ||||| || |||| ||| |||||||| ||||||||| |||| || || | |||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
1509203 |
ttgattttggctggccccattcttttatagccttcactgcaacctcttttcctagcctaggtacctttacaaccaccatgtcttgcctagcatccaatga |
1509104 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctctt-gatcatagatttatcacctgaa |
301 |
Q |
| |
|
|||||| | || |||||||| | |||||||||||||||||||| ||||| | ||||| ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
1509103 |
tggtgccgtataagcacaaacattgggattctctttcaaaatctcttctgtaatatacatgtatctcctcttagatcatcgatttatcacctgaa |
1509009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 410 - 604
Target Start/End: Complemental strand, 1477772 - 1477578
Alignment:
| Q |
410 |
aatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
509 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1477772 |
aatacttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagtaaaaatcaggatatgtgctttgttcaacaca |
1477673 |
T |
|
| Q |
510 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatat |
604 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
1477672 |
gttggctggatttgcagtgccaatggccatgatggtggcagggccttctgccctctgagccttgcgaatttcagatacactcaccatcttgatat |
1477578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 406 - 613
Target Start/End: Complemental strand, 1481887 - 1481680
Alignment:
| Q |
406 |
aaaaaatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaa |
505 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||| || || ||||| ||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
1481887 |
aaaaagtacttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagtaaaaatcaggatatgtgctttgttcaa |
1481788 |
T |
|
| Q |
506 |
cacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatatc |
605 |
Q |
| |
|
|||| || ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| ||| ||| |
|
|
| T |
1481787 |
cacagtttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaatttcagatacactcaccatcttggtatt |
1481688 |
T |
|
| Q |
606 |
tttggtag |
613 |
Q |
| |
|
|||||||| |
|
|
| T |
1481687 |
tttggtag |
1481680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 25 - 298
Target Start/End: Complemental strand, 1486832 - 1486559
Alignment:
| Q |
25 |
aagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatctttgactttggttgaccc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||| | | |||||| ||||||||| || ||||| |||||||||||||||||||| ||| |
|
|
| T |
1486832 |
aagacctaagagttttgtgagttggtaatcggcaccaggcatgcctataccactcatggtgcaaaatattaagtgtgtaatctttgactttggttggccc |
1486733 |
T |
|
| Q |
125 |
cgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcac |
224 |
Q |
| |
|
||| ||||||||||||||||||||||| || || | ||||| || ||| ||||||||||||||||||||||||||| ||||||| ||| || | |
|
|
| T |
1486732 |
tattcttttatagctttcactgcagcctcatttcctagcctaggcacgtctcgcaccaccatgtcttgcctagcatccaaagaaggtgtcatataagtgc |
1486633 |
T |
|
| Q |
225 |
aaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacct |
298 |
Q |
| |
|
||| | ||||||||||||||||||| | |||||| ||||||| ||||| ||||||||||| ||||| |||||| |
|
|
| T |
1486632 |
aaaaattaggattctctttcaaaatagcttctgtttggtacatgtatcttctcttgatcattgatttttcacct |
1486559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 1499419 - 1499124
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||| |||||||| |||||||| || || || ||||| | |
|
|
| T |
1499419 |
cttttcacatatgggttaagacctaagagttttgttagttggtaatccgcaccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatat |
1499320 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
||||||| |||||||||| ||| | ||||| |||||||||||||||||||| | |||||||| ||||||| ||| ||||||||||||||||||||| || |
|
|
| T |
1499319 |
ttgacttcggttgaccccattcttcgatagccttcactgcagcctccttccctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaaga |
1499220 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagg |
303 |
Q |
| |
|
||||| | | | |||| | | ||||| |||||||||||||| ||||||| ||||| || |||| || | |||||||||||||||||| |||| |
|
|
| T |
1499219 |
aggtgtcttatcgaagcaaaaatttggattatctttcaaaatctcttctgttaagtacacatgtctcttcctaatcatagatttatcacctaaagg |
1499124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 410 - 563
Target Start/End: Complemental strand, 1485621 - 1485466
Alignment:
| Q |
410 |
aatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagta--gaaatcaggatatgtgctttgttcaaca |
507 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||||| |||||||| || ||||||| |||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1485621 |
aatacttacaaatgcgctgaaatttctctctgagttgcgtcttgtgctcgctatttgcgattctgaagtatagaaatcaggatatgtgctttgttcaaca |
1485522 |
T |
|
| Q |
508 |
caattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccct |
563 |
Q |
| |
|
||||| | ||| |||||||| || ||||| || ||| ||||||||||||||||||| |
|
|
| T |
1485521 |
caatttggtggatttgcagttcctatggccaagatgattgcagggccttctgccct |
1485466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 1496981 - 1496809
Alignment:
| Q |
412 |
tacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaat |
511 |
Q |
| |
|
|||| ||| ||||| || ||||||| ||| | |||||||||||| ||| | ||||||| | |||| |||| ||||||||||||||||||||||| ||||| |
|
|
| T |
1496981 |
tactaacatatgcgctggaatttcttttttaattcagtcttgtgctcattgtttgtgactctgaaatagagatcaggatatgtgctttgttcaatacaat |
1496882 |
T |
|
| Q |
512 |
tggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcaga |
584 |
Q |
| |
|
| | ||| |||||||||||||| ||||| || |||| ||||||||||||||||||||| | ||||||||||| |
|
|
| T |
1496881 |
ttgttggatttgcagtgccaatagctaagatagttgtagggccttctgccctttgagcccttcgaatttcaga |
1496809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 328
Target Start/End: Original strand, 46706931 - 46707251
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||| ||||||| |
|
|
| T |
46706931 |
cttttcacatatgggcgaagaccgaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatct |
46707030 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46707031 |
ttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgtcttgcctggcatccaatga |
46707130 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaat |
307 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46707131 |
aggtgccatatattcacaaacactgggattctctttcaaaatctcctatgttaggtacatgtatctcctcttgatcatagatttatcacctgaaggtaat |
46707230 |
T |
|
| Q |
308 |
tatgaaaagatgatattagtt |
328 |
Q |
| |
|
||||| | ||||||||||||| |
|
|
| T |
46707231 |
tatgataggatgatattagtt |
46707251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 5310576 - 5310282
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5310576 |
cttttcacatatggacgaaggcccaagagttttgtgagttgataatcagctccaggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatct |
5310477 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5310476 |
ttgactttggttgaccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctaccaccaccatgtcttgccttgcatccaatga |
5310377 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaag |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5310376 |
aggtgccatgtattcacaaacactaggattttctttcaaaatctcctctgttagatacatgtatctcctcttgatcatagatttatcacctgaag |
5310282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 5315290 - 5314996
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5315290 |
cttttcacatatgggcgaagacctaatagtttggtgagttgataatctgctccaggcatgtcaacaccacttgtggtgcaaacgattaagtgagtaatct |
5315191 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315190 |
ttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
5315091 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaag |
302 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5315090 |
aggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatagatttatcacctgaag |
5314996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 5289640 - 5289934
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5289640 |
cttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatct |
5289739 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289740 |
ttgactttggttgaccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
5289839 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaag |
302 |
Q |
| |
|
||| |||||||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
5289840 |
aggggccatgtattcacaaacacttggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcacctgaag |
5289934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 5302675 - 5302381
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||| ||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5302675 |
cttttcacatatgggcgaagacccaagagtttggtgagttgataatcagcttcgggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatct |
5302576 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302575 |
ttgactttggttgaccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
5302476 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaag |
302 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
5302475 |
aggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcacctgaag |
5302381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 5284487 - 5284193
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5284487 |
cttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatct |
5284388 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
||||||||||||| |||| ||| |||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5284387 |
ttgactttggttggccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctaccaccaccatgtcttgccttgcatccaatga |
5284288 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaag |
302 |
Q |
| |
|
||| |||||||||||||||||||||||||| | ||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5284287 |
aggggccatgtattcacaaacactaggattttttttcaaaatttcttctgttagatacatgtatctcctcttgatcatagatttatcacctgaag |
5284193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 410 - 618
Target Start/End: Original strand, 5290081 - 5290289
Alignment:
| Q |
410 |
aatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
509 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
5290081 |
aatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacaca |
5290180 |
T |
|
| Q |
510 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatatctttg |
609 |
Q |
| |
|
||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
5290181 |
atttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaatttcagacacactcaccattttgatatctttg |
5290280 |
T |
|
| Q |
610 |
gtagcaaat |
618 |
Q |
| |
|
||| ||||| |
|
|
| T |
5290281 |
gtatcaaat |
5290289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 410 - 618
Target Start/End: Complemental strand, 5302234 - 5302026
Alignment:
| Q |
410 |
aatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
509 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
5302234 |
aatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacaca |
5302135 |
T |
|
| Q |
510 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatatctttg |
609 |
Q |
| |
|
||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
5302134 |
atttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaatttcagacacactcaccattttgatatctttg |
5302035 |
T |
|
| Q |
610 |
gtagcaaat |
618 |
Q |
| |
|
||| ||||| |
|
|
| T |
5302034 |
gtatcaaat |
5302026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 410 - 618
Target Start/End: Complemental strand, 5309871 - 5309663
Alignment:
| Q |
410 |
aatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
509 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5309871 |
aatacttacacatgcgctgaaatttctccttaagttcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacaca |
5309772 |
T |
|
| Q |
510 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatatctttg |
609 |
Q |
| |
|
||| ||||| |||||||| |||||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
5309771 |
atttgctggatttgcagtaccaatggccaaaatagttgcaggaccttctgctctttgagcattacgaatttcagacacactcaccattttgatatcttta |
5309672 |
T |
|
| Q |
610 |
gtagcaaat |
618 |
Q |
| |
|
|| |||||| |
|
|
| T |
5309671 |
gttgcaaat |
5309663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 410 - 599
Target Start/End: Complemental strand, 5284046 - 5283857
Alignment:
| Q |
410 |
aatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
509 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
5284046 |
aatacttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgattttaaagtaaaaatcaggatacgtgctttgttcaacaca |
5283947 |
T |
|
| Q |
510 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatatt |
599 |
Q |
| |
|
||| ||||| |||||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
5283946 |
atttgctggatttgcagtcccaatggccaagatggttgcagggccttctgccctttgagctttacgaatttcagacacactcaccatatt |
5283857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 410 - 599
Target Start/End: Complemental strand, 5314688 - 5314499
Alignment:
| Q |
410 |
aatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
509 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5314688 |
aatacttacacatgcgctgaaatttctctttgagttcaactttgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgctttgttcaacaca |
5314589 |
T |
|
| Q |
510 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatatt |
599 |
Q |
| |
|
||| ||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
5314588 |
atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacacactcaccatatt |
5314499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 4e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 24163733 - 24164023
Alignment:
| Q |
8 |
cttttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatct |
107 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||||||||||||||||| || |||||||| || ||||||||| | ||||||| || ||||| || |||| |
|
|
| T |
24163733 |
ctttttacacatgggcgaagacctaagagttttgtgagttggtaatcggcaccaggcatatctacaccacttatagtgcaaaatattaagtgtgtgatct |
24163832 |
T |
|
| Q |
108 |
ttgactttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatga |
207 |
Q |
| |
|
||||||||||||| |||| ||| |||||||| ||||| || |||||||| || | ||| ||| ||||||| ||||||||||||||||||| |||||| || |
|
|
| T |
24163833 |
ttgactttggttggccccattcttttatagccttcacggctgcctcctttcctagtcttggtgcctctactaccaccatgtcttgcctagtatccaaaga |
24163932 |
T |
|
| Q |
208 |
aggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacct |
298 |
Q |
| |
|
||||||||| || || | |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
24163933 |
aggtgccatataagtgcacaagttaggattctctttcaaaatctcttcggttaggtacatgtatctcctcttgatcatagttttatcacct |
24164023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 410 - 587
Target Start/End: Original strand, 24165436 - 24165613
Alignment:
| Q |
410 |
aatacttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
509 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| ||||||| || || ||||||| | | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24165436 |
aatacttacaaatgcgttgaaatttttctttgagtttgatcttgtgctcgctgtttgtgactctaaagtagaaatcaggatatgtgctttgttcaacaca |
24165535 |
T |
|
| Q |
510 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacac |
587 |
Q |
| |
|
|| | ||| ||||||||||||||||| || || |||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
24165536 |
gtttggtggatttgcagtgccaatggccaagatagttgcagggccttctgccctttgagccttacgaatttcagacac |
24165613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 5e-46; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 37859310 - 37859600
Alignment:
| Q |
11 |
ttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatctttg |
110 |
Q |
| |
|
||||||||||||||||| || ||||| ||||| || || || || || || |||||||| || ||||| |||||||||| ||| | ||| |||||||| | |
|
|
| T |
37859310 |
ttcacatatggacgaaggcccaagagctttgtcagctgatagtcggcaccgggcatgtccacgccactggtggtgcaaaagatgaggtgggtaatcttgg |
37859409 |
T |
|
| Q |
111 |
actttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatgaagg |
210 |
Q |
| |
|
|||| |||||||||| |||||| || || || ||| ||||| || || | ||| |||||||| || |||||||||||||| || |||||||||||||| |
|
|
| T |
37859410 |
acttaggttgaccccattccttgatggcctttgttgctgcctcttttcctagtcttggtacctccacaaccaccatgtcttgtcttgcatccaatgaagg |
37859509 |
T |
|
| Q |
211 |
tgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaa |
301 |
Q |
| |
|
||||||||| || || ||||| ||||||||||||| ||||| ||||| | |||||| |||||| |||||||||| || |||||||||||| |
|
|
| T |
37859510 |
tgccatgtactcgcatacacttggattctctttcaggatctcttctgtcaagtacatgtatctcttcttgatcattgacttatcacctgaa |
37859600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 37863336 - 37863626
Alignment:
| Q |
11 |
ttcacatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatctttg |
110 |
Q |
| |
|
|||||||| || |||||||| ||||| |||||||| || || ||||| |||||||| || ||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
37863336 |
ttcacatacgggcgaagacccaagagctttgtgagctgatagtcagcaccaggcatatccacaccacttgtggtgcaaaaaattagatgagtaatctttg |
37863435 |
T |
|
| Q |
111 |
actttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatgaagg |
210 |
Q |
| |
|
|||| |||||||||| |||||| ||||| || ||||||||| || || | | ||||| || || |||||||| || || || |||||||| ||||| |
|
|
| T |
37863436 |
acttaggttgaccccattccttgatagcctttgttgcagcctcttttcctagctttggtacttccacaaccaccatatcctgtcttgcatccaacgaagg |
37863535 |
T |
|
| Q |
211 |
tgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacctgaa |
301 |
Q |
| |
|
|||||| || ||||| | |||||||||||| ||||||||||| || || | | ||| |||||| |||| ||||||||||||||||||||| |
|
|
| T |
37863536 |
tgccatatactcacataaactaggattctccttcaaaatctcttcagtcaaatgcatgtatctcttcttaatcatagatttatcacctgaa |
37863626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 39030244 - 39029960
Alignment:
| Q |
14 |
acatatggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatctttgact |
113 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||| || || |||||||||||||| || |||||||||| ||||||| || | ||||||| | |||||| |
|
|
| T |
39030244 |
acatatggacaaaggcctaagagctttgtgagctgatagtcagctccaggcatatcgacaccacttgaagtgcaaaatatgagatgagtaaccattgact |
39030145 |
T |
|
| Q |
114 |
ttggttgaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtgc |
213 |
Q |
| |
|
| |||||||||| ||| || ||||| || | ||| || || || || | | ||||| || | ||||| ||||| || || |||||||| |||||||| |
|
|
| T |
39030144 |
taggttgaccccattcattgatagcctttattgctgcttcttttccgagctttggtacttcctcaaccacaatgtcctgtcttgcatccaaagaaggtgc |
39030045 |
T |
|
| Q |
214 |
catgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttgatcatagatttatcacct |
298 |
Q |
| |
|
||| | ||||||| ||| |||||||| ||||| || | ||||| | | ||| |||||| |||| ||||||||||| |||||| |
|
|
| T |
39030044 |
cataaactcacaaaaacttggattctccttcaatatttgttctgtcaaatgcatgtatctcttcttaatcatagatttgtcacct |
39029960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 414 - 509
Target Start/End: Original strand, 37863716 - 37863811
Alignment:
| Q |
414 |
cttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
509 |
Q |
| |
|
|||||||||||| || ||||| ||| |||||||||| ||||||||||| |||||||| |||||| || ||||||||||| || || |||||||| |
|
|
| T |
37863716 |
cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacaca |
37863811 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 470
Target Start/End: Original strand, 37859726 - 37859782
Alignment:
| Q |
414 |
cttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgat |
470 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||||||| |||||||| |||||||| |
|
|
| T |
37859726 |
cttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgat |
37859782 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 39029691 - 39029611
Alignment:
| Q |
414 |
cttacacatgcgttgaaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgt |
494 |
Q |
| |
|
|||||||||||| |||||||| ||||| || || |||||||| |||||||||||||| ||||||||| || |||||||| |
|
|
| T |
39029691 |
cttacacatgcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgcggaagtagaagtctggatatgt |
39029611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 35250978 - 35250738
Alignment:
| Q |
20 |
ggacgaagacctaagagttttgtgagttggtaatcagctccaggcatgtcaacaccacttgtggtgcaaacgatcaagtgagtaatctttgactttggtt |
119 |
Q |
| |
|
|||||||| |||| | ||||||||| || |||||||| |||||||| || |||||||| || |||||| || | |||||| ||||| |||||||||| |
|
|
| T |
35250978 |
ggacgaagtcctagcaattttgtgagctgataatcagcaccaggcatatccacaccactagtaatgcaaaatatgaggtgagtgatcttggactttggtt |
35250879 |
T |
|
| Q |
120 |
gaccccgttcctttatagctttcactgcagcctccttccccaatctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgta |
219 |
Q |
| |
|
|||||| |||||| || ||||| ||| || || || || || || || |||||||| |||||||| ||||| || ||||||||||| ||||||||||| |
|
|
| T |
35250878 |
gaccccattccttgatcgcttttgttgctgcttcttttcctaaccttggcacctctactaccaccatatcttgtcttgcatccaatgatggtgccatgta |
35250779 |
T |
|
| Q |
220 |
ttcacaaacactaggattctctttcaaaatctcctctgtta |
260 |
Q |
| |
|
|||| | | | ||||| ||||||| ||| |||||||||| |
|
|
| T |
35250778 |
agcacacatattgggattttctttcagaatttcctctgtta |
35250738 |
T |
|
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