View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5471_low_1 (Length: 371)
Name: NF5471_low_1
Description: NF5471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5471_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 35354656 - 35354339
Alignment:
| Q |
18 |
tctttttgttgcatgaatccaaacacacaataagtgcttttgttcattaaaatgtaggatgggaatgagcagcatttcaaagtgaaccaggacaagttct |
117 |
Q |
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| T |
35354656 |
tctttttgttgcatgaatccaaacacacaataagtgcttttgttcattaaaatgtaggatgggaatgagcagcatttcaaagtgaaccaggacaagttct |
35354557 |
T |
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| Q |
118 |
tgataacagcatttcaacagtactgtaaaaagatgaaattgcaatatgccaccatcaactttctgcttgatgagaaatctattcaaggaaatcgtcaaac |
217 |
Q |
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| T |
35354556 |
tgataacagcatttcaacagtactgtaaaaagatgaaattgcaatatgccaccatcaactttctgcttgatgagaaatctattcaaggaaatcgtcaaac |
35354457 |
T |
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| Q |
218 |
accaaagatggttagtttcttcttgctttctcacattttccttcatttctagaataaaccgaatgttgtaaatagctaaacacattctg-----taaaag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
35354456 |
accaaagatggttagtttcttcttgctttctcacattttccttcatttctagaaaaaaccgaatgttgtaaatagctaaacacattctgtaatataaaag |
35354357 |
T |
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| Q |
313 |
ctctagaaatattaagta |
330 |
Q |
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|||||||||||||||||| |
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| T |
35354356 |
ctctagaaatattaagta |
35354339 |
T |
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