View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5472-Insertion-1 (Length: 739)
Name: NF5472-Insertion-1
Description: NF5472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5472-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 454 - 679
Target Start/End: Complemental strand, 12844794 - 12844569
Alignment:
| Q |
454 |
ttgcttcatctctcattctt-aaaacatagaacagta---catgatccaactcacaaaatgaaactcatgcataaa-caaattaaacaaaatctgactta |
548 |
Q |
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| T |
12844794 |
ttgcttcatctctcattcttcaaaacatagaacagtagtacatgatccaactcacaaaatgaaactcatgcataaaacaaattaaacaaaatctgactta |
12844695 |
T |
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| Q |
549 |
actcaacacataaaataaaactaaacttaattttcttctttttcccytttcttcaaagcataagtccaactcaaaaataasagcatcaataaaatctatc |
648 |
Q |
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| T |
12844694 |
actcaacacataaaataaaactaaatttaa-tttcttctttt--ccctttcttcaaagcataagtccaactc-aaaataaaagcatcaataaaatctatc |
12844599 |
T |
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| Q |
649 |
aagataaatcttcaacatggctcatcaccac |
679 |
Q |
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| T |
12844598 |
aagataaatattcaacat-gctcatcaccac |
12844569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 17651006 - 17651106
Alignment:
| Q |
8 |
cgattgatgtgccaacctgcaaactcgcctgacttaaatatcctagaccttggttttttcagagcaattcaatcattgcagcataaggaaacacctaaga |
107 |
Q |
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| T |
17651006 |
cgattgatgtgtcaacctcccaattcccttgaactaaatgtcttagaccttggcttcttcagtgccattcaatcactgcaacataaggaaacaccgaaga |
17651105 |
T |
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| Q |
108 |
c |
108 |
Q |
| |
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| T |
17651106 |
c |
17651106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 121
Target Start/End: Original strand, 43569476 - 43569510
Alignment:
| Q |
87 |
agcataaggaaacacctaagacattcgatgagctt |
121 |
Q |
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| T |
43569476 |
agcataaggaaacacctaagacaatcgatgagctt |
43569510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 43569577 - 43569665
Alignment:
| Q |
190 |
atgcatgattgaaataatgaa-gttagcaggtgcaaacaaatacatcattccgcatataaagagagata---ttatgcgtagagaagga |
274 |
Q |
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| T |
43569577 |
atgcatgactgaaataataaaagttaacaagttcaaacacatacatcattccacgtataaagaaagatattgttatgcgtagagaagga |
43569665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 17783145 - 17783049
Alignment:
| Q |
12 |
tgatgtgccaacctgcaaactcgcctgacttaaatatcctagaccttggttttttcagagcaattcaatcattgcagcataaggaaacacctaagac |
108 |
Q |
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||||||| |||||| | || || ||||| ||||| || |||||||||| || || || || ||||||||| |||| |||||||||||||| ||||| |
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| T |
17783145 |
tgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttgggttctttagtgccattcaatcactgcaacataaggaaacaccgaagac |
17783049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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