View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5472-Insertion-3 (Length: 594)
Name: NF5472-Insertion-3
Description: NF5472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5472-Insertion-3 |
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| [»] chr8 (10 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 288 - 594
Target Start/End: Original strand, 11977885 - 11978192
Alignment:
| Q |
288 |
ttaacaagcaaagcaacacattttgttattaaaccacataacatagtactaatcaaaaggaagacatgacttcagttctatgatagaattggccagatgg |
387 |
Q |
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| T |
11977885 |
ttaacaagcaaagcaacacattttgttattaaaccacataacatagtactaatcaaaaggaagacatgacttcagtcctatgatagaattggccagatgg |
11977984 |
T |
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| Q |
388 |
acttccattgggaagcaatgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataacca |
487 |
Q |
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| T |
11977985 |
acttccattgggaagcaatgctagcttcacaacactagcagcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataacca |
11978084 |
T |
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| Q |
488 |
gggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtat-agcattcatagcagctttagacaagacataagcaccaccagttt |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11978085 |
gggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtataagcattcatagcagctttagacaagacataagcaccaccagttt |
11978184 |
T |
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| Q |
587 |
taggccat |
594 |
Q |
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|||||||| |
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| T |
11978185 |
taggccat |
11978192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 303 - 594
Target Start/End: Original strand, 11982537 - 11982826
Alignment:
| Q |
303 |
acacattttgttattaaaccacataacatagtactaatcaaaaggaagacatgacttcagttctatgatagaattggccagatggacttccattgggaag |
402 |
Q |
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| T |
11982537 |
acacattttgttcttaaaccacataacatagtactaatcaaaaggcaga---gacttcagtccggttatagaatcggccagatggacttccattgggaag |
11982633 |
T |
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| Q |
403 |
caatgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattg |
502 |
Q |
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| T |
11982634 |
caatgctagcttgacaacactagcagcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattg |
11982733 |
T |
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| Q |
503 |
atgcataaagtaggaaaattcttagcaagaattcttgtat-agcattcatagcagctttagacaagacataagcaccaccagttttaggccat |
594 |
Q |
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| T |
11982734 |
atgcataaagtaggaaaattcttagcaagaattcttgtataagcattcatagcagctttagacaagacataagcaccaccagttttaggccat |
11982826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 11977638 - 11977797
Alignment:
| Q |
41 |
agcaaagtacttcaatagtaattataagtagtagtcttctttcaaataatctctcatgtccttcctctcaaaagcttcataaagtattttctttttacaa |
140 |
Q |
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| T |
11977638 |
agcaaagtacttcaataataattataagtagtagtcttctttcaaataatctctcatgtccttcctcccaaaagcttcttaaagtattttccttttccaa |
11977737 |
T |
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| Q |
141 |
caatctattagttttgcatataaatactttccttaatatagaaaacttgatgtagcaact |
200 |
Q |
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| T |
11977738 |
caatcaattagttttgcatataaatactttccttaatctagaaaacttgatgtagcaact |
11977797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 406 - 563
Target Start/End: Original strand, 11972194 - 11972352
Alignment:
| Q |
406 |
tgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattgatg |
505 |
Q |
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| T |
11972194 |
tgctagcttcacaacactaacagcaccttcttcaaccgttaacaaaccgttattggcagttatatctgttatggtataaccagggcaaacactattgatg |
11972293 |
T |
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| Q |
506 |
cataaagtaggaaaattcttagcaagaattcttgtata-gcattcatagcagctttaga |
563 |
Q |
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| T |
11972294 |
catatagtaggaaattttttagcaagaattcttgtatatgcattcatagcagctttaga |
11972352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 11982343 - 11982419
Alignment:
| Q |
115 |
cttcataaagtattttctttttacaacaatctattagttttgcatataaatactttccttaatatagaaaacttgat |
191 |
Q |
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| T |
11982343 |
cttcctaaactattttcttcttccaacaatctattagttttgcagataaaccctttccttaatctagaaaacttgat |
11982419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 562
Target Start/End: Original strand, 12002655 - 12002835
Alignment:
| Q |
383 |
gatggacttccattgggaagcaatgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacat |
482 |
Q |
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|||||||| ||||||||||||| ||||| | | ||| | ||| ||||||||||| | || |||| ||| |||||| |||||||||| || |||||| |
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| T |
12002655 |
gatggactaccattgggaagcagtgctaacctaacaggatgagcagcaccttcttccactgtgaagaaaccggtattagcagttatatcggttttgacat |
12002754 |
T |
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| Q |
483 |
aaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtat-agcattcatagcagctttag |
562 |
Q |
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| T |
12002755 |
aaccagggcaaacacaattgatgcagaagttaggatacttctttgcagtaattcttgtgtaagcattcatagaagctttag |
12002835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 562
Target Start/End: Original strand, 11986582 - 11986775
Alignment:
| Q |
370 |
atagaattggccagatggacttccattgggaagcaatgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttata |
469 |
Q |
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|||||| |||||||||||||| || ||||||| ||||||| | | || | ||| ||||||||||| | || |||| ||| |||||| |||||||| |
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| T |
11986582 |
atagaagtggccagatggactaccgctgggaagtaatgctaacctaaccggatgagcagcaccttcttctaccgtgaagaaaccggtattagcagttata |
11986681 |
T |
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| Q |
470 |
tctgtgatgacataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtata-gcattcatagcagctttag |
562 |
Q |
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| T |
11986682 |
tcggttttgacataaccagggcaaacacaattgatgcagaagttaggatacttctttgcagtaattcttgtgtaggcattcatagaagctttag |
11986775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 446 - 561
Target Start/End: Original strand, 12007944 - 12008060
Alignment:
| Q |
446 |
aagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtata-g |
544 |
Q |
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| T |
12007944 |
aagagaccggtattagcagttatatcggttttgacataaccagggcaaacacaattgatgcagaaaccagggtacttttttgcaataattcttgtatagg |
12008043 |
T |
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| Q |
545 |
cattcatagcagcttta |
561 |
Q |
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| T |
12008044 |
cattcatagaagcttta |
12008060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 562
Target Start/End: Original strand, 11996240 - 11996324
Alignment:
| Q |
479 |
acataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtata-gcattcatagcagctttag |
562 |
Q |
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|||||||||||||||| || ||||||||| ||| | ||| | ||||| ||||||||| ||||||| |||||||||| |||||||| |
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| T |
11996240 |
acataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaagaattattgtataggcattcatagaagctttag |
11996324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 11977562 - 11977595
Alignment:
| Q |
8 |
acaaggtctttgttcaaatatctacattaagcca |
41 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
11977562 |
acaaggtctttgttcaaatatctacattaagcca |
11977595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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