View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5472-Insertion-4 (Length: 572)
Name: NF5472-Insertion-4
Description: NF5472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5472-Insertion-4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 11 - 572
Target Start/End: Original strand, 13224598 - 13225158
Alignment:
| Q |
11 |
aagcttagattcttaagagtcttcaatgcttacagtaacagtttcgtaggccctctccccaaagaatttatcaggctaccttttctagaacaccttaacc |
110 |
Q |
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| T |
13224598 |
aagcttagattcttaagagtcttcaatgcttacagtaacagtttcgtaggccctctccccgaagaatttatcaggctaccttttttagaacaccttaacc |
13224697 |
T |
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| Q |
111 |
tcggtggaagctacttcagtggcaaaatccctcaaagttatggaactttcaaaagactcaaatttctttatttggctggtaatgcattggaaggttcact |
210 |
Q |
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| T |
13224698 |
tcggtggaagctacttcagtggcaaaatccctcaaagttatggaactttcaaaagactcaaatttctttatttggctggtaatgcattggaaggttcact |
13224797 |
T |
|
| Q |
211 |
accacctcaactaggcttattatcagagttgcaacgcttggaaatcggatacaactcgtactcaggaacaataccagtggaattaacaatgttgtctaat |
310 |
Q |
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| T |
13224798 |
accacctcaactaggcttattatcagagttacaacgcttggaaatcggatacaactcctactcaggagcaataccagtggaattaacaatgttgtctaat |
13224897 |
T |
|
| Q |
311 |
ctcaagtacttggatatctctggtgccaacatttctggtcaagtgattcctgaactaggtaacttatgcatgcttgaaacactgcttctctttaagaatc |
410 |
Q |
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| T |
13224898 |
ctcaagtacttggatatctcaggtgccaacatttctggtcaagtgattcctgaactaggtaacttatccatgcttgaaacactgcttctcttcaaaaatc |
13224997 |
T |
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| Q |
411 |
atttacatggtgaaatcccatcaagcataggaaagttgaaatcattgcaagctcttgatttatcggaaaatgaactcactggttcgattccatcagaaat |
510 |
Q |
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| T |
13224998 |
atttacatggtgaaatcccatcaagcataggaaagttgaaatcattgcaagctcttgatttatcggaaaatgaactcactggttcgattccatcagaaat |
13225097 |
T |
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| Q |
511 |
aacaatgttgaaggagatagtagatttgaggctcatgtataacaagcctaaaaggtgaaatt |
572 |
Q |
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| T |
13225098 |
aacaatgttgaaggagatagtagatttgaggctcatgtataacaag-ctaaaaggtgaaatt |
13225158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 35 - 525
Target Start/End: Complemental strand, 13149151 - 13148661
Alignment:
| Q |
35 |
aatgcttacagtaacagtttcgtaggccctctccccaaagaatttatcaggctaccttttctagaacaccttaacctcggtggaagctacttcagtggca |
134 |
Q |
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| T |
13149151 |
aatgcatacagcaacagtttcactggccctcttcctgaagaactaatcaggcttccatttctagaaaagctcagccttggtggaagctacttcaatggaa |
13149052 |
T |
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| Q |
135 |
aaatccctcaaagttatggaactttcaaaagactcaaatttctttatttggctggtaatgcattggaaggttcactaccacctcaactaggcttattatc |
234 |
Q |
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| T |
13149051 |
gaatcccaccaagctatggaaatttcaaaagactcaagttcctagatttagctggtaatgcattggaaggcacactaccacctgaactaggcttattatc |
13148952 |
T |
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| Q |
235 |
agagttgcaacgcttggaaatcggatacaactcgtactcaggaacaataccagtggaattaacaatgttgtctaatctcaagtacttggatatctctggt |
334 |
Q |
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|||| | |||| || ||||| ||||||||| | || ||||||||| ||||||| ||| |||||||||||| || ||| || ||||| || ||||| |
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| T |
13148951 |
agagctacaacatttagaaattggatacaacacatattcaggaacactaccagttgaactaacaatgttgtgtagtctaaaatacttagacatctcacaa |
13148852 |
T |
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| Q |
335 |
gccaacatttctggtcaagtgattcctgaactaggtaacttatgcatgcttgaaacactgcttctctttaagaatcatttacatggtgaaatcccatcaa |
434 |
Q |
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| T |
13148851 |
gccaacatttctggtctagtgattcctgaactaggaaacttaaccatgcttgaaacactgcttcttttcaagaatcacttaagtggtgaaatcccatcaa |
13148752 |
T |
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| Q |
435 |
gcataggaaagttgaaatcattgcaagctcttgatttatcggaaaatgaactcactggttcgattccatcagaaataacaatgttgaagga |
525 |
Q |
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| T |
13148751 |
gcataggcaagttgaaatccctaaaagctattgatttatcagaaaataaactcacgggttcaattccatcagaaataacaatgttaaagga |
13148661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 119 - 525
Target Start/End: Complemental strand, 13315662 - 13315256
Alignment:
| Q |
119 |
agctacttcagtggcaaaatccctcaaagttatggaactttcaaaagactcaaatttctttatttggctggtaatgcattggaaggttcactaccacctc |
218 |
Q |
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||||| |||| ||||| |||||| ||||||||||| || ||||||| || || || ||||| ||||||||||||||||||||||| |||||||| |
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| T |
13315662 |
agctatttcaatggcacaatcccagcaagttatggaaactttgaaagactaaagttcctctatttagctggtaatgcattggaaggttctgtaccacctg |
13315563 |
T |
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| Q |
219 |
aactaggcttattatcagagttgcaacgcttggaaatcggatacaactcgtactcaggaacaataccagtggaattaacaatgttgtctaatctcaagta |
318 |
Q |
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||||||| ||||||||||||||||||| |||||||| ||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||| || |
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| T |
13315562 |
aactagggttattatcagagttgcaacatttggaaattggatacaacaaattttcaggaacactaccagtggaattaacgatgttgtctaatctcaaata |
13315463 |
T |
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| Q |
319 |
cttggatatctc-tggtgccaacatttctggtcaagtgattcctgaactaggtaacttatgcatgcttgaaacactgcttctctttaagaatcatttaca |
417 |
Q |
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| T |
13315462 |
cttagacatctcatcgt-ccaatatttctggtcaagtgattcctgagctaggaaacttaaccatgcttgaaaagttgtatatctccaagaatcgcttaag |
13315364 |
T |
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| Q |
418 |
tggtgaaatcccatcaagcataggaaagttgaaatcattgcaagctcttgatttatcggaaaatgaactcactggttcgattccatcagaaataacaatg |
517 |
Q |
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|| ||||||||||||| |||||| ||||| ||||| | ||| ||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |
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| T |
13315363 |
cggcgaaatcccatcaaacataggccagttggaatcactacaacatcttgatttatcggataatgaactaactggttcaattccatcagaaataacaatg |
13315264 |
T |
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| Q |
518 |
ttgaagga |
525 |
Q |
| |
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||||||| |
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| T |
13315263 |
ctgaagga |
13315256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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