View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5472-Insertion-6 (Length: 425)

Name: NF5472-Insertion-6
Description: NF5472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5472-Insertion-6
NF5472-Insertion-6
[»] chr6 (1 HSPs)
chr6 (8-425)||(2143379-2143796)
[»] chr8 (2 HSPs)
chr8 (165-425)||(30935237-30935497)
chr8 (8-126)||(30935131-30935251)
[»] chr4 (7 HSPs)
chr4 (165-425)||(32186057-32186317)
chr4 (8-126)||(622802-622920)
chr4 (8-126)||(31676900-31677020)
chr4 (165-360)||(622610-622816)
chr4 (8-126)||(32185951-32186071)
chr4 (165-374)||(31677006-31677232)
chr4 (386-425)||(31677247-31677286)
[»] chr7 (2 HSPs)
chr7 (165-425)||(7663480-7663740)
chr7 (8-126)||(7663374-7663494)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 2143796 - 2143379
Alignment:
Q  8 aaatcacccaagccctatgtttaaatgttgtatttcaaaatcattttcacggtgaattataaactattgtcactggaaagnnnnnnnng---gtgataaa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |   ||||||||    
T  2143796 aaatcacccaagccctatgtttaaatgttgtatttcaaaatcattttcacggtgaattataaactattgtcactggaaaaaaaaaaaagaaggtgataaa 2143697  T
Q  105 ccaaaacaagataagatccaattggatcggataccgagtttttaaaatnnnnnnnnnncaaagataagatccaatatgagtcccattaacttgtccatta 204  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||            |||||||| |||||||||||||||||||| |||||| ||||    
T  2143696 ccaaaataagataagatccaattggatcggataccgagttttaaaaaaaaaaaaa----aaagataacatccaatatgagtcccattagcttgtctatta 2143601  T
Q  205 gannnnnnnnnnnngactggatgctcattactagttcgtcgcgaaggaatcaggttgtatatatactttagaaaaagaagaaggaatctagttgaaatga 304  Q
    ||            ||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2143600 gattttttatttttgactggacgctcattactagttcgtgtagaaggaatcaggttgtatatatactttagaaaaagaagaaggaatctagctgaaatga 2143501  T
Q  305 gtttgtacctagatactttggttctatatggaggggcacataagtaatcyttgtgactgcactttaaaaacgatttttcct-ttgtgtggggtcatgaaa 403  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  2143500 ttttgtacctagatactttggttctatatggaggggcgcataagtaatctttgtgactgcactttaaaaacgattttttttgttgtgtggggtcatgaaa 2143401  T
Q  404 caatttttgtttaatacctgct 425  Q
    |||||||||||| |||||||||    
T  2143400 caatttttgttttatacctgct 2143379  T

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Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 165 - 425
Target Start/End: Original strand, 30935237 - 30935497
Alignment:
Q  165 aagataagatccaatatgagtcccattaacttgtccattagannnnnnnnnnnngactggatgctcattactagttcgtcgcgaaggaatcaggttgtat 264  Q
    |||||||||||||||||||||||||||  |||||||||||||            |||||||||||||||||||||| ||   ||||||||||||||||||    
T  30935237 aagataagatccaatatgagtcccatttgcttgtccattagattttttatttttgactggatgctcattactagttggtgtagaaggaatcaggttgtat 30935336  T
Q  265 atatactttagaaaaagaagaaggaatctagttgaaatgagtttgtacctagatactttggttctatatggaggggcacataagtaatcyttgtgactgc 364  Q
    ||  ||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||    
T  30935337 attaactttagaaaaagaagaaggaatctagctgaaatgattttctacctagatac-ttggttttatatggaggggcgcataagtaatctttgtgactgc 30935435  T
Q  365 actttaaaaacgatttttcct-ttgtgtggggtcatgaaacaatttttgtttaatacctgct 425  Q
    ||||||||||||||||||  | ||| ||||| ||||||||||||| |||||| | |||||||    
T  30935436 actttaaaaacgattttttttgttgggtgggatcatgaaacaattcttgttttaaacctgct 30935497  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 30935131 - 30935251
Alignment:
Q  8 aaatcacccaagccctatgtttaaatgttgtatttcaaaatcattttcacggtgaattataaac--tattgtcactggaaagnnnnnnnnggtgataaac 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||        ||||||||||    
T  30935131 aaatcgcccaagccctatgtttaaatgttgtatttcaaaatcattttcacggtgaattataaactgtattgtcactggaaagaaaaaaaaggtgataaac 30935230  T
Q  106 caaaacaagataagatccaat 126  Q
    |||||||||||||||||||||    
T  30935231 caaaacaagataagatccaat 30935251  T

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Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 165 - 425
Target Start/End: Original strand, 32186057 - 32186317
Alignment:
Q  165 aagataagatccaatatgagtcccattaacttgtccattagannnnnnnnnnnngactggatgctcattactagttcgtcgcgaaggaatcaggttgtat 264  Q
    |||||||||||||||||||||||||||  |||||||||||||            |||||||||||||||||||||| ||   ||||||||||||||||||    
T  32186057 aagataagatccaatatgagtcccatttgcttgtccattagattttttatttttgactggatgctcattactagttggtgtagaaggaatcaggttgtat 32186156  T
Q  265 atatactttagaaaaagaagaaggaatctagttgaaatgagtttgtacctagatactttggttctatatggaggggcacataagtaatcyttgtgactgc 364  Q
    ||  ||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||    
T  32186157 attaactttagaaaaagaagaaggaatctagctgaaatgattttctacctagatac-ttggttttatatggaggggcgcataagtaatctttgtgactgc 32186255  T
Q  365 actttaaaaacgatttttcct-ttgtgtggggtcatgaaacaatttttgtttaatacctgct 425  Q
    |||||||||| |||||||  | ||| ||||| ||||||||||||| |||||| | |||||||    
T  32186256 actttaaaaatgattttttttgttgggtgggatcatgaaacaattcttgttttaaacctgct 32186317  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 622920 - 622802
Alignment:
Q  8 aaatcacccaagccctatgtttaaatgttgtatttcaaaatcattttcacggtgaattataaactattgtcactggaaagnnnnnnnnggtgataaacca 107  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  622920 aaatcacccaaaccctatgtttaaattttgtatttcaaaatcattttcacggtgaattataaactattgtcactggaaagaaaaaaaaggtgataaacca 622821  T
Q  108 aaacaagataagatccaat 126  Q
    |||||||||||||||||||    
T  622820 aaacaagataagatccaat 622802  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 31676900 - 31677020
Alignment:
Q  8 aaatcacccaagccctatgtttaaatgttgtatttcaaaatcattttcacggtgaattataaactattgtcactggaaag--nnnnnnnnggtgataaac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||    
T  31676900 aaatcacccaagccctatgtttaaatgttgtatttcaaaatcattttcacggtgaattataaactattgtcactggaaagaaaaaaaaaaggtgataaac 31676999  T
Q  106 caaaacaagataagatccaat 126  Q
    |||||||||||||||||||||    
T  31677000 caaaacaagataagatccaat 31677020  T

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Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 165 - 360
Target Start/End: Complemental strand, 622816 - 622610
Alignment:
Q  165 aagataagatccaatatgagtcccattaacttgtccattagannnnnnnnnnnngactggatgctcattactagttcgtcgcgaaggaatcaggttgtat 264  Q
    |||||||||||||||||||||||||||| |||||||||||||            |||||||||||||||||||||| ||   ||||||||||| ||||||    
T  622816 aagataagatccaatatgagtcccattagcttgtccattagattttttatttttgactggatgctcattactagttggtgtagaaggaatcagattgtat 622717  T
Q  265 atatactttagaaaaagaagaaggaatctagtt-----------gaaatgagtttgtacctagatactttggttctatatggaggggcacataagtaatc 353  Q
    ||  ||||||||||||||||||||||||||| |           ||||||| |||||||||||||||||||||  |||||||||||||||||||||||||    
T  622716 attaactttagaaaaagaagaaggaatctagctatgagaagagagaaatgattttgtacctagatactttggtgttatatggaggggcacataagtaatc 622617  T
Q  354 yttgtga 360  Q
     ||||||    
T  622616 tttgtga 622610  T

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Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 32185951 - 32186071
Alignment:
Q  8 aaatcacccaagccctatgtttaaatgttgtatttcaaaatcattttcacggtgaattataaac--tattgtcactggaaagnnnnnnnnggtgataaac 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||        ||||||||||    
T  32185951 aaatcgcccaagccctatgtttaaatgttgtatttcaaaatcattttcacggtgaattataaactgtattgtcactggaaagaaaaaaaaggtgataaac 32186050  T
Q  106 caaaacaagataagatccaat 126  Q
    |||||||||||||||||||||    
T  32186051 caaaacaagataagatccaat 32186071  T

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Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 165 - 374
Target Start/End: Original strand, 31677006 - 31677232
Alignment:
Q  165 aagataagatccaatatgagtcccattaacttgtccattagannnnnnnnnnnngactggatgctcattacta------gttcgtcgcgaaggaatcagg 258  Q
    |||||||||||||||||||||||||||| ||||| |||||||             ||||||||||||||||||      ||| ||   ||||||||||||    
T  31677006 aagataagatccaatatgagtcccattagcttgttcattagattttttatttttaactggatgctcattactattactagttggtgtagaaggaatcagg 31677105  T
Q  259 ttgtatatatactttagaaaaagaagaaggaatctagtt-----------gaaatgagtttgtacctagatactttggttctatatggaggggcacataa 347  Q
    ||||||||  ||||||||||||||||||||||||||| |           ||||| | ||||||||| |||||||||||  |||||||||||||||||||    
T  31677106 ttgtatattaactttagaaaaagaagaaggaatctagctatgaactgagagaaataattttgtacctggatactttggtgttatatggaggggcacataa 31677205  T
Q  348 gtaatcyttgtgactgcactttaaaaa 374  Q
    |||||| ||||||||||||||||||||    
T  31677206 gtaatctttgtgactgcactttaaaaa 31677232  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 386 - 425
Target Start/End: Original strand, 31677247 - 31677286
Alignment:
Q  386 ttgtgtggggtcatgaaacaatttttgtttaatacctgct 425  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  31677247 ttgtgtggggtcatgaaacaatttttgttttaaacctgct 31677286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 165 - 425
Target Start/End: Original strand, 7663480 - 7663740
Alignment:
Q  165 aagataagatccaatatgagtcccattaacttgtccattagannnnnnnnnnnngactggatgctcattactagttcgtcgcgaaggaatcaggttgtat 264  Q
    |||||||||||||||||||||||||||  |||||||||||||            |||||||||||||||||||||| ||   ||||||||||||||||||    
T  7663480 aagataagatccaatatgagtcccatttgcttgtccattagattttttatttttgactggatgctcattactagttggtgtagaaggaatcaggttgtat 7663579  T
Q  265 atatactttagaaaaagaagaaggaatctagttgaaatgagtttgtacctagatactttggttctatatggaggggcacataagtaatcyttgtgactgc 364  Q
    ||  ||||||||||||||||||||||||||| | |||||| ||| ||||||||||| |||||| ||||| ||||||  ||||||||||| ||||||||||    
T  7663580 attaactttagaaaaagaagaaggaatctagctcaaatgattttctacctagatac-ttggttttatatagaggggtgcataagtaatctttgtgactgc 7663678  T
Q  365 actttaaaaacgatttttcct-ttgtgtggggtcatgaaacaatttttgtttaatacctgct 425  Q
    ||||||||||||||||||  | ||| ||||||||||||||||||| |||||| | |||||||    
T  7663679 actttaaaaacgattttttttgttgggtggggtcatgaaacaattcttgttttaaacctgct 7663740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 7663374 - 7663494
Alignment:
Q  8 aaatcacccaagccctatgtttaaatgttgtatttcaaaatcattttcacggtgaattataaac--tattgtcactggaaagnnnnnnnnggtgataaac 105  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||        ||||||||||    
T  7663374 aaatcgcccaagccctatatttaaatgttgtatttcaaaatcattttcacggtgaattataaactgtattgtcactggaaagaaaaaaaaggtgataaac 7663473  T
Q  106 caaaacaagataagatccaat 126  Q
    |||||||||||||||||||||    
T  7663474 caaaacaagataagatccaat 7663494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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